wiki:MacSingleStepInstallerFigs

Version 26 (modified by toby, 9 months ago) (diff)

--

Installing GSAS-II with a Single-Step Download (with figures)

This process downloads an installer that will place a working version of Python and the required packages onto your computer, it will then initially install a slightly out-of-date version of GSAS-II including the binaries files needed for running on a Mac. If internet access is available, the GSAS-II distribution site will be checked and updates will be applied to bring GSAS-II up to date. If the installer is moved to a computer without an internet connection, this will provide a working, though slightly out-of-date, copy of GSAS-II.

Use the following steps to install GSAS-II on a Mac:

Step 1:

In this step you will ​download a file and then use bash to run it. A simple way to do this is to open a terminal window (use the Terminal app in Applications/Utilities folder; typing terminal.app into the finder search box should find this for you).

In that window cut and paste the two commands below:

g2="https://subversion.xray.aps.anl.gov/admin_pyGSAS/downloads/gsas2full-Latest-MacOSX-x86_64.sh"
curl "$g2" > /tmp/g2.sh; bash /tmp/g2.sh -b -p ~/g2full

A few notes on this step.

  • By using the -b option in the command above, you are agreeing to the Python and GSAS-II license shown below; the text of the GSAS-II license is also below.
  • The -p option specifies where GSAS-II is installed. Note that -p ~/g2full installs GSAS-II into directory g2full in your home folder. Change ~/g2full if desired.
  • The curl command will likely fail if your network requires a proxy to access the internet. In that case you can download file https://subversion.xray.aps.anl.gov/admin_pyGSAS/downloads/gsas2full-Latest-MacOSX-x86_64.sh by clicking on it here in your browser and run it using steps listed below. Note though that you will need to know the proxy settings in order to get GSAS-II to properly update, see ProxyInfo for more.
  • If you want to install GSAS-II onto a computer that does not have an internet connection (or has a slow or expensive connection), download file https://subversion.xray.aps.anl.gov/admin_pyGSAS/downloads/gsas2full-Latest-MacOSX-x86_64.sh on a computer with better access and move the downloaded file on a USB stick, etc to where you wish to install it. Note that the installation process will use the internet if access is available, but usually only very minor amounts of information will be transferred. Installation will complete properly even without network access, but a not quite up-to-date version of GSAS-II will be will installed.

Step 2:

As soon as enter is pressed after the second command, the download starts, as shown immediately below. The file downloaded is circa 250 Mb, so you may see this complete in seconds or minutes.

initial command

Once the file is downloaded, Python and GSAS-II are installed from the downloaded file and a significant amount of information is displayed (shown below). The installation will then pause and you will be asked to supply a proxy address, as shown below. The need for a proxy is rare, so most people will only need to press enter here (see ProxyInfo for more details).

supply proxy info

Step 3:

Once the proxy information is entered, bootstrap.py is run to update GSAS-II. This will fail with an error message (see example in output shown below if a network connection is not present, but the installation will still continue. Some additional processing

additional processing is done, including creation of an AppleScript? to launch GSAS-II. Apple security in Big Sur (MacOS 11.0) will not allow the file. The only way that I (Brian) know to change that is to edit it in the Script Editor. This is implemented in the installation process, but the first time this is done, MacOS asks for permission to run this (as shown immediately below). Note that OK must be pressed within 2 minutes or the request times out (should this happen, in Script Editor, select the GSAS-II window and then in the File menu, select Save).

permission to launch ScriptEditor

Step 3:

The installation procedure creates an app to help launch GSAS-II and places that app in the GSAS-II folder. It also opens a Finder window, showing that app (labeled as GSAS-II), as below. This app will not run if moved to another location, but it can be dragged to the toolbar, as is shown below. It may not appear with the GSAS-II icon, as shown in the figure (the reason for this is not yet understood.)

Confirm that GSAS-II can run from this app by double-clicking on it. The first time this is done, you will likely be asked to confirm this app should have access to the Terminal app with this message:

permissions message

Click OK and three windows should open (the terminal window, the GSAS-II main window and the GSAS-II Plots window).

Step 4: (drag to dock, optional)

The GSAS-II app created by the installation procedure can be dragged to the dock to make launching GSAS-II simple. Note the app will not run if moved to another location, such as the desktop. See the next step on how to create a desktop icon.

Step 5: (Desktop icon, optional)

If you would like place the GSAS-II app in another location (for example your computer's desktop) to make it convenient to start GSAS-II, you need to make an alias. This alias file can be moved. Press control and click on the GSAS-II app (or use right-click with a 2 or 3 button mouse) and a menu of options is shown. Click on "Make Alias" and a new file, "GSAS-II alias" is created in that folder.

Note that the "GSAS-II alias" file can be dragged to the desktop, or wherever it is convenient for your use. It can also be renamed after the file is moved.

Update Error Message

After Python and packages are installed, the GSASII/bootstrap.py file is invoked. This tests that the GSAS-II binaries files work, creates shortcuts and updates the GSAS-II files using program svn (subversion) from the APS server https://subversion.xray.aps.anl.gov/pyGSAS. The svn update requires a working internet connection. If the svn program is not able to update properly then this error message is shown:

proxy or no internet error

If the computer does not have an internet connection, this error is expected and can be ignored. If the computer is later connected to the internet, you are recommended to use the Help/Update command to obtain the latest version of GSAS-II and continue updating periodically.

If the computer does have a working internet connection, it is likely that the update failed due to your network requiring an internet proxy (discussed in the next section).

Note the message for recreating the error:

/<your location>/bin/python /<your location>/GSASII/bootstrap.py --noinstall

If GSAS-II is installed, but the installation process is unable to update, create an app, etc., it may be worthwhile to run this command again by copying the information from your error message into a Terminal.app window (the flag such as --noinstall may be omitted.) This will provide better warning and error messages than above.

Installing with a web proxy or to a system without the internet

If the above "curl" command in step 1 fails, but you are able to download the same file in a web browser, your network is most likely set up so that internet traffic is routed through a proxy computer. If you have a proxy, you will need to know either the name or IP address of the proxy computer and you will need to know the IP port (usually 80 but sometimes something else, such as 8080 or 8000.) Finding a network administrator who knows what your site is doing can be tough but may be needed to get updating to work. The web site http:/www.whatismyproxy.com/ may help.

The easiest way to setup a proxy is to download the installation file with a browser and start it, as described in steps A1 and A2 below, then continue with step 2, above. After completing this installation process, start GSAS-II and from inside GSAS-II use the File/"Edit Proxy" menu command to enter the proxy information; check if the values work using the Help/"Check for Updates" menu command to update to the latest version.

Step A1:

Download this file in a web browser:

Step A2:

Execute this file.

Type "bash " into a terminal window (note space after "h"), then drag the downloaded file from a finder window into the terminal window.

This places the file name with full path name into the terminal window, then press Enter.

Debugging

Two files are created as the GSAS-II installation is done.

  • File /tmp/bootstrap1.log contains the output when creating the app and making other installation steps.
  • File /tmp/bootstrap2.log contains the output when performing an update.

If installation fails and you want to get help, please include these files in your e-mail. Note they will deleted during your next reboot.

Licenses

GSAS-II Information & Anaconda license:

====================================================
This is a single-download installer for GSAS-II. It includes other
software such as subversion (svn, used to update GSAS-II), a Python 
interpreter and a number of Python packages required by GSAS-II. The
file you are running will install GSAS-II, Python, etc. and will then
run the bootstrap.py script to create shortcuts and will use svn to
update to the latest version of GSAS-II, if an internet connection is
available. Note that the bootstrap.py script can be rerun manually to
obtain updates.

*** Note that while this installer can be rerun to install the software
in a new location, once these files are installed, they should not be
moved. ***

If you use GSAS-II in your research, please show your support by citing:
B.H. Toby & R.B. Von Dreele, J. Appl. Cryst. 46, 544-549 (2013)  
(also see Help/About)

See the GSAS-II source code for license information. Material
below is relevant to the Anaconda Python distribution, which is
freely provided by Continuum Analytics, Inc. 

====================================================
 Copyright (c) 2016, Continuum Analytics, Inc.
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
    * Redistributions of source code must retain the above copyright
      notice, this list of conditions and the following disclaimer.
    * Redistributions in binary form must reproduce the above copyright
      notice, this list of conditions and the following disclaimer in the
      documentation and/or other materials provided with the distribution.
    * Neither the name of Continuum Analytics, Inc. nor the
      names of its contributors may be used to endorse or promote products
      derived from this software without specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND
CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES,
INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL CONTINUUM ANALYTICS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED
AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING
IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
THE POSSIBILITY OF SUCH DAMAGE.

GSAS-II License:

           General Structure Analysis System - II (GSAS-II)
                         OPEN SOURCE LICENSE

Copyright 2010, UChicago Argonne, LLC, Operator of Argonne National Laboratory 
All rights reserved.

GSAS-II may be used by anyone on a royalty-free basis. Use and
redistribution, with or without modification, are permitted provided
that the following conditions are met:

* Redistributions of source code must retain the above copyright
  notice, this list of conditions and the following disclaimer.
* Software changes, modifications, or derivative works should be noted
  with comments and the author and organization's name.
* Distribution of changed, modified or derivative works based on
  GSAS-II grants the GSAS-II copyright holder unrestricted permission
  to include any, or all, new and changed code in future GSAS-II
  releases.
* Redistributions that include binary forms must include all relevant
  source code and reproduce the above copyright notice, this list of
  conditions and the following disclaimers in the documentation and/or
  other materials provided with the distribution.
* Neither the names of UChicago Argonne, LLC or the Department of
  Energy nor the names of its contributors may be used to endorse or
  promote products derived from this software without specific prior
  written permission.
* The software and the end-user documentation included with the
  redistribution, if any, must include the following acknowledgment:
  "This product includes software produced by UChicago Argonne, LLC
  under Contract No. DE-AC02-06CH11357 with the Department of Energy."

*****************************************************************************
WARRANTY DISCLAIMER: THE SOFTWARE IS SUPPLIED "AS IS" WITHOUT WARRANTY
OF ANY KIND. THE COPYRIGHT HOLDERS, THEIR THIRD PARTY LICENSORS, THE
UNITED STATES, THE UNITED STATES DEPARTMENT OF ENERGY, AND THEIR
EMPLOYEES: (1) DISCLAIM ANY WARRANTIES, EXPRESS OR IMPLIED, INCLUDING
BUT NOT LIMITED TO ANY IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS
FOR A PARTICULAR PURPOSE, TITLE OR NON-INFRINGEMENT, (2) DO NOT ASSUME
ANY LEGAL LIABILITY OR RESPONSIBILITY FOR THE ACCURACY, COMPLETENESS,
OR USEFULNESS OF THE SOFTWARE, (3) DO NOT REPRESENT THAT USE OF THE
SOFTWARE WOULD NOT INFRINGE PRIVATELY OWNED RIGHTS, (4) DO NOT WARRANT
THAT THE SOFTWARE WILL FUNCTION UNINTERRUPTED, THAT IT IS ERROR-FREE
OR THAT ANY ERRORS WILL BE CORRECTED.

LIMITATION OF LIABILITY: IN NO EVENT WILL THE COPYRIGHT HOLDERS, THEIR
THIRD PARTY LICENSORS, THE UNITED STATES, THE UNITED STATES DEPARTMENT
OF ENERGY, OR THEIR EMPLOYEES: BE LIABLE FOR ANY INDIRECT, INCIDENTAL,
CONSEQUENTIAL, SPECIAL OR PUNITIVE DAMAGES OF ANY KIND OR NATURE,
INCLUDING BUT NOT LIMITED TO LOSS OF PROFITS OR LOSS OF DATA, FOR ANY
REASON WHATSOEVER, WHETHER SUCH LIABILITY IS ASSERTED ON THE BASIS OF
CONTRACT, TORT (INCLUDING NEGLIGENCE OR STRICT LIABILITY), OR
OTHERWISE, EVEN IF ANY OF SAID PARTIES HAS BEEN WARNED OF THE
POSSIBILITY OF SUCH LOSS OR DAMAGES.
******************************************************************************

Prompted Installation

screen image with file download & start of self-installer

Answer prompts from the install script.

  1. Press enter to start the procedure
  1. Press space several times to page through the copyright notice. For convenience the full text from this screen and the GSAS-II license are shown below.

start of "license" information

  1. Type "yes" to accept the copyright information and start the installation.

End of "license" information

  1. Enter a location for where the files should be installed, if the default is not what you prefer. The default will usually be OK, in which case you can simply press enter. Installation has not been tested where paths contain spaces or special characters, so it is a good idea to install GSAS-II in an alternate location if the default has spaces or Unicode characters. Note that GSAS-II cannot be moved once installed. If you need it to move it please reinstall and delete the old copy.

Make a note of where you have installed GSAS-II; this will be needed if you have problems with the software.

enter install location

  1. Pressing enter to accept the default installation location or providing a installation location will trigger installation of the software with a series of messages. If the installation progresses normally, the final messages will appear as below:

after successful install

If error or warning messages are seen, it is suggested that you save a screen image or use cut and paste to save the text in the window to a file. The most common error message is discussed below.

  1. It is recommended that you type "no" for the question about initializing gsas2full using conda init as it is not needed to run GSAS-II. If you say "yes" or use the default, then the version of Python installed by GSAS-II becomes the default version, which usually will not cause problems either. The installation completes with these messages (which can be ignored):

after successful install completed

Older installers

See these older instructions for infomation on older distributions. They may be needed for systems with older versions of MacOS. Note that these installers do require an internet connection to complete the installation.

Installer Output

toby@macos-11 ~ % g2="https://subversion.xray.aps.anl.gov/admin_pyGSAS/downloads/gsas2full-Latest-MacOSX-x86_64.sh"
toby@macos-11 ~ % curl "$g2" > /tmp/g2.sh; bash /tmp/g2.sh -b -p ~/g2full
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  236M  100  236M    0     0  13.9M      0  0:00:16  0:00:16 --:--:-- 14.1M
PREFIX=/Users/toby/g2full
Unpacking payload ...
 Collecting package metadata (current_repodata.json): done                      
Solving environment: done

## Package Plan ##

  environment location: /Users/toby/g2full

  added / updated specs:
    - apr==1.6.3=he795440_0
    - backports.lzma==0.0.14=py37hd621484_0
    - backports==1.0=pyhd3eb1b0_2
    - blas==1.0=mkl
    - brotlipy==0.7.0=py37h9ed2024_1003
    - ca-certificates==2020.12.8=hecd8cb5_0
    - certifi==2020.12.5=py37hecd8cb5_0
    - cffi==1.14.4=py37h2125817_0
    - chardet==4.0.0=py37hecd8cb5_1003
    - conda-package-handling==1.7.2=py37h22f3db7_0
    - conda==4.9.2=py37hecd8cb5_0
    - cryptography==3.3.1=py37hbcfaee0_0
    - cycler==0.10.0=py37_0
    - cyrus-sasl==2.1.27=h0a44026_7
    - expat==2.2.10=hb1e8313_2
    - freetype==2.10.4=ha233b18_0
    - gettext==0.19.8.1=hb0f4f8b_2
    - gsas2complete==4750=0
    - h5py==2.10.0=py37h0601b69_1
    - hdf5==1.10.6=hdbbcd12_0
    - idna==2.10=py_0
    - imageio==2.9.0=py_0
    - intel-openmp==2019.4=233
    - jpeg==9b=he5867d9_2
    - kiwisolver==1.3.0=py37h23ab428_0
    - krb5==1.18.2=h75d18d8_0
    - lcms2==2.11=h92f6f08_0
    - libcxx==10.0.0=1
    - libdb==6.1.26=h0a44026_0
    - libedit==3.1.20191231=h1de35cc_1
    - libffi==3.3=hb1e8313_2
    - libgfortran==3.0.1=h93005f0_2
    - libiconv==1.16=h1de35cc_0
    - libpng==1.6.37=ha441bb4_0
    - libtiff==4.1.0=hcb84e12_0
    - libutf8proc==2.1.1=h1de35cc_0
    - lz4-c==1.8.1.2=h1de35cc_0
    - matplotlib-base==3.3.2=py37h181983e_0
    - matplotlib==3.3.2=hecd8cb5_0
    - mkl-service==2.3.0=py37h9ed2024_0
    - mkl==2019.4=233
    - mkl_fft==1.2.0=py37hc64f4ea_0
    - mkl_random==1.1.1=py37h959d312_0
    - ncurses==6.2=h0a44026_1
    - numpy-base==1.18.5=py37h3304bdc_0
    - numpy==1.18.5=py37h1da2735_0
    - olefile==0.46=py37_0
    - openssl==1.1.1i=h9ed2024_0
    - pillow==8.1.0=py37h5270095_0
    - pip==20.3.3=py37hecd8cb5_0
    - pycosat==0.6.3=py37h9ed2024_0
    - pycparser==2.20=py_2
    - pyopengl==3.1.1a1=py37_0
    - pyopenssl==20.0.1=pyhd3eb1b0_1
    - pyparsing==2.4.7=py_0
    - pysocks==1.7.1=py37hecd8cb5_0
    - python-dateutil==2.8.1=py_0
    - python.app==2=py37_10
    - python==3.7.9=h26836e1_0
    - pytz==2020.5=pyhd3eb1b0_0
    - readline==8.0=h1de35cc_0
    - requests==2.25.1=pyhd3eb1b0_0
    - ruamel_yaml==0.15.87=py37haf1e3a3_1
    - scipy==1.5.2=py37h912ce22_0
    - serf==1.3.9=hae1257d_0
    - setuptools==51.0.0=py37hecd8cb5_2
    - six==1.15.0=py37hecd8cb5_0
    - sqlite==3.33.0=hffcf06c_0
    - svn==1.10.2=h670755d_0
    - tk==8.6.10=hb0a8c7a_0
    - tornado==6.1=py37h9ed2024_0
    - tqdm==4.55.1=pyhd3eb1b0_0
    - urllib3==1.26.2=pyhd3eb1b0_0
    - wheel==0.36.2=pyhd3eb1b0_0
    - wxpython==4.0.4=py37hebc47a7_0
    - xz==5.2.5=h1de35cc_0
    - yaml==0.2.5=haf1e3a3_0
    - zlib==1.2.11=h1de35cc_3
    - zstd==1.3.7=h5bba6e5_0


The following NEW packages will be INSTALLED:

  apr                pkgs/main/osx-64::apr-1.6.3-he795440_0
  backports          pkgs/main/noarch::backports-1.0-pyhd3eb1b0_2
  backports.lzma     pkgs/main/osx-64::backports.lzma-0.0.14-py37hd621484_0
  blas               pkgs/main/osx-64::blas-1.0-mkl
  brotlipy           pkgs/main/osx-64::brotlipy-0.7.0-py37h9ed2024_1003
  ca-certificates    pkgs/main/osx-64::ca-certificates-2020.12.8-hecd8cb5_0
  certifi            pkgs/main/osx-64::certifi-2020.12.5-py37hecd8cb5_0
  cffi               pkgs/main/osx-64::cffi-1.14.4-py37h2125817_0
  chardet            pkgs/main/osx-64::chardet-4.0.0-py37hecd8cb5_1003
  conda              pkgs/main/osx-64::conda-4.9.2-py37hecd8cb5_0
  conda-package-han~ pkgs/main/osx-64::conda-package-handling-1.7.2-py37h22f3db7_0
  cryptography       pkgs/main/osx-64::cryptography-3.3.1-py37hbcfaee0_0
  cycler             pkgs/main/osx-64::cycler-0.10.0-py37_0
  cyrus-sasl         pkgs/main/osx-64::cyrus-sasl-2.1.27-h0a44026_7
  expat              pkgs/main/osx-64::expat-2.2.10-hb1e8313_2
  freetype           pkgs/main/osx-64::freetype-2.10.4-ha233b18_0
  gettext            pkgs/main/osx-64::gettext-0.19.8.1-hb0f4f8b_2
  gsas2complete      builds/osx-64::gsas2complete-4750-0
  h5py               pkgs/main/osx-64::h5py-2.10.0-py37h0601b69_1
  hdf5               pkgs/main/osx-64::hdf5-1.10.6-hdbbcd12_0
  idna               pkgs/main/noarch::idna-2.10-py_0
  imageio            pkgs/main/noarch::imageio-2.9.0-py_0
  intel-openmp       pkgs/main/osx-64::intel-openmp-2019.4-233
  jpeg               pkgs/main/osx-64::jpeg-9b-he5867d9_2
  kiwisolver         pkgs/main/osx-64::kiwisolver-1.3.0-py37h23ab428_0
  krb5               pkgs/main/osx-64::krb5-1.18.2-h75d18d8_0
  lcms2              pkgs/main/osx-64::lcms2-2.11-h92f6f08_0
  libcxx             pkgs/main/osx-64::libcxx-10.0.0-1
  libdb              pkgs/main/osx-64::libdb-6.1.26-h0a44026_0
  libedit            pkgs/main/osx-64::libedit-3.1.20191231-h1de35cc_1
  libffi             pkgs/main/osx-64::libffi-3.3-hb1e8313_2
  libgfortran        pkgs/main/osx-64::libgfortran-3.0.1-h93005f0_2
  libiconv           pkgs/main/osx-64::libiconv-1.16-h1de35cc_0
  libpng             pkgs/main/osx-64::libpng-1.6.37-ha441bb4_0
  libtiff            pkgs/main/osx-64::libtiff-4.1.0-hcb84e12_0
  libutf8proc        pkgs/main/osx-64::libutf8proc-2.1.1-h1de35cc_0
  lz4-c              pkgs/main/osx-64::lz4-c-1.8.1.2-h1de35cc_0
  matplotlib         pkgs/main/osx-64::matplotlib-3.3.2-hecd8cb5_0
  matplotlib-base    pkgs/main/osx-64::matplotlib-base-3.3.2-py37h181983e_0
  mkl                pkgs/main/osx-64::mkl-2019.4-233
  mkl-service        pkgs/main/osx-64::mkl-service-2.3.0-py37h9ed2024_0
  mkl_fft            pkgs/main/osx-64::mkl_fft-1.2.0-py37hc64f4ea_0
  mkl_random         pkgs/main/osx-64::mkl_random-1.1.1-py37h959d312_0
  ncurses            pkgs/main/osx-64::ncurses-6.2-h0a44026_1
  numpy              pkgs/main/osx-64::numpy-1.18.5-py37h1da2735_0
  numpy-base         pkgs/main/osx-64::numpy-base-1.18.5-py37h3304bdc_0
  olefile            pkgs/main/osx-64::olefile-0.46-py37_0
  openssl            pkgs/main/osx-64::openssl-1.1.1i-h9ed2024_0
  pillow             pkgs/main/osx-64::pillow-8.1.0-py37h5270095_0
  pip                pkgs/main/osx-64::pip-20.3.3-py37hecd8cb5_0
  pycosat            pkgs/main/osx-64::pycosat-0.6.3-py37h9ed2024_0
  pycparser          pkgs/main/noarch::pycparser-2.20-py_2
  pyopengl           pkgs/main/osx-64::pyopengl-3.1.1a1-py37_0
  pyopenssl          pkgs/main/noarch::pyopenssl-20.0.1-pyhd3eb1b0_1
  pyparsing          pkgs/main/noarch::pyparsing-2.4.7-py_0
  pysocks            pkgs/main/osx-64::pysocks-1.7.1-py37hecd8cb5_0
  python             pkgs/main/osx-64::python-3.7.9-h26836e1_0
  python-dateutil    pkgs/main/noarch::python-dateutil-2.8.1-py_0
  python.app         pkgs/main/osx-64::python.app-2-py37_10
  pytz               pkgs/main/noarch::pytz-2020.5-pyhd3eb1b0_0
  readline           pkgs/main/osx-64::readline-8.0-h1de35cc_0
  requests           pkgs/main/noarch::requests-2.25.1-pyhd3eb1b0_0
  ruamel_yaml        pkgs/main/osx-64::ruamel_yaml-0.15.87-py37haf1e3a3_1
  scipy              pkgs/main/osx-64::scipy-1.5.2-py37h912ce22_0
  serf               pkgs/main/osx-64::serf-1.3.9-hae1257d_0
  setuptools         pkgs/main/osx-64::setuptools-51.0.0-py37hecd8cb5_2
  six                pkgs/main/osx-64::six-1.15.0-py37hecd8cb5_0
  sqlite             pkgs/main/osx-64::sqlite-3.33.0-hffcf06c_0
  svn                pkgs/main/osx-64::svn-1.10.2-h670755d_0
  tk                 pkgs/main/osx-64::tk-8.6.10-hb0a8c7a_0
  tornado            pkgs/main/osx-64::tornado-6.1-py37h9ed2024_0
  tqdm               pkgs/main/noarch::tqdm-4.55.1-pyhd3eb1b0_0
  urllib3            pkgs/main/noarch::urllib3-1.26.2-pyhd3eb1b0_0
  wheel              pkgs/main/noarch::wheel-0.36.2-pyhd3eb1b0_0
  wxpython           pkgs/main/osx-64::wxpython-4.0.4-py37hebc47a7_0
  xz                 pkgs/main/osx-64::xz-5.2.5-h1de35cc_0
  yaml               pkgs/main/osx-64::yaml-0.2.5-haf1e3a3_0
  zlib               pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3
  zstd               pkgs/main/osx-64::zstd-1.3.7-h5bba6e5_0


Preparing transaction: done
Executing transaction: / 
done
Finish up GSAS-II installation, version 4750
Reverted 'GSASII/bindist/fellipse.cpython-37m-darwin.so'
Reverted 'GSASII/bindist/histogram2d.cpython-37m-darwin.so'
Reverted 'GSASII/bindist/histosigma2d.cpython-37m-darwin.so'
Reverted 'GSASII/bindist/libgcc_s.1.dylib'
Reverted 'GSASII/bindist/libquadmath.0.dylib'
Reverted 'GSASII/bindist/pack_f.cpython-37m-darwin.so'
Reverted 'GSASII/bindist/polymask.cpython-37m-darwin.so'
Reverted 'GSASII/bindist/pydiffax.cpython-37m-darwin.so'
Reverted 'GSASII/bindist/pypowder.cpython-37m-darwin.so'
Reverted 'GSASII/bindist/pyspg.cpython-37m-darwin.so'
Reverted 'GSASII/bindist/pytexture.cpython-37m-darwin.so'
Reverted 'GSASII/bindist/spotmask.cpython-37m-darwin.so'
Reverted 'GSASII/bindist/unpack_cbf.cpython-37m-darwin.so'
launching bootstrap process
Running bootstrap from /Users/toby/g2full/GSASII at 2021-01-08 17:57:05.128726
	Id: $Id: bootstrap.py 4748 2021-01-08 04:22:55Z toby $
Python:     3.7.9
numpy:      1.18.5
**********************************************************************
Preloading matplotlib to build fonts...
Checking python packages...

Checking for subversion...
 found svn image: /Users/toby/g2full/bin/svn
Ready to bootstrap GSAS-II from repository
	https://subversion.xray.aps.anl.gov/pyGSAS/
to /Users/toby/g2full/GSASII
Enter your proxy address [none needed]: 

(continues after proxy info is entered)

***************************************************************************
Now preparing to install GSAS-II
svn load command:  /Users/toby/g2full/bin/svn co https://subversion.xray.aps.anl.gov/pyGSAS/trunk/ /Users/toby/g2full/GSASII --non-interactive --trust-server-cert

subversion output:
Checked out revision 4751.

***************************************************************************
import of GSASIIpath completed
Load binaries matching current python/numpy
Running svn command:
  /Users/toby/g2full/bin/svn list https://subversion.xray.aps.anl.gov/pyGSAS//Binaries/ --non-interactive --trust-server-cert 
FYI: The current numpy version, 1.18.5, is newer than the newest dist version 1.18
Loading files to /Users/toby/g2full/GSASII/bindist/
  from https://subversion.xray.aps.anl.gov/pyGSAS//Binaries/mac_64_p3.7_n1.18/

svn command:  /Users/toby/g2full/bin/svn switch https://subversion.xray.aps.anl.gov/pyGSAS//Binaries/mac_64_p3.7_n1.18/ /Users/toby/g2full/GSASII/bindist/ --non-interactive --trust-server-cert --accept theirs-conflict --force -rHEAD --ignore-ancestry 

=== Output from svn switch===========================================
At revision 4751.
======================================================================

Running bootstrap from /Users/toby/g2full/GSASII at 2021-01-08 18:18:35.147421
	Id: $Id: bootstrap.py 4748 2021-01-08 04:22:55Z toby $
Python:     3.7.9
numpy:      1.18.5
**********************************************************************
Preloading matplotlib to build fonts...
Checking python packages...
Ready to bootstrap GSAS-II from repository
	https://subversion.xray.aps.anl.gov/pyGSAS/
to /Users/toby/g2full/GSASII
import of GSASIIpath completed
Successfully tested compiled routines
Byte-compiling all .py files...
done
running /Users/toby/g2full/GSASII/makeMacApp.py
/Users/toby/g2full/GSASII/GSAS-II.py

Created GSAS-II app (/Users/toby/g2full/GSASII/GSAS-II.app).
Viewing app in Finder so you can drag it to the dock if, you wish.
GSAS-II installer, version 4750 completed
*** Viewing GSAS-II app in Finder; you may wish to drag it to the dock.***
installation finished.
toby@macos-11 ~ %

(Example when no network connection is present)

Enter your proxy address [none needed]: 

***************************************************************************
Now preparing to install GSAS-II
svn load command:  /Users/toby/g2full/bin/svn co https://subversion.xray.aps.anl.gov/pyGSAS/trunk/ /Users/toby/g2full/GSASII --non-interactive --trust-server-cert

subversion output:
subversion returned an error:
None
svn: E170013: Unable to connect to a repository at URL 'https://subversion.xray.aps.anl.gov/pyGSAS/trunk'
svn: E670008: nodename nor servname provided, or not known

Retrying after a cleanup...
svn load command:  /Users/toby/g2full/bin/svn co https://subversion.xray.aps.anl.gov/pyGSAS/trunk/ /Users/toby/g2full/GSASII --non-interactive --trust-server-cert

subversion output:
subversion returned an error:
None
svn: E170013: Unable to connect to a repository at URL 'https://subversion.xray.aps.anl.gov/pyGSAS/trunk'
svn: E670008: nodename nor servname provided, or not known

Retrying with a command for older svn version...
 /Users/toby/g2full/bin/svn co https://subversion.xray.aps.anl.gov/pyGSAS/trunk/ /Users/toby/g2full/GSASII
subversion returned an error:
svn: E170013: Unable to connect to a repository at URL 'https://subversion.xray.aps.anl.gov/pyGSAS/trunk'
svn: E670008: nodename nor servname provided, or not known

GSAS-II appears to be installed but failed to be updated. A likely reason
is a network access problem. If your web browser works, but this update did
not, the most common reason is you need to use a network proxy. Please
check with a network administrator or use http://www.whatismyproxy.com/

If installing from the gsas2full dist and your computer is not connected
to the internet, this error message can be ignored.

Recreate error this using command:
     /Users/toby/g2full/bin/python /Users/toby/g2full/GSASII/bootstrap.py --noinstall

BOOTSTRAP WARNING: 
subversion returned an error:
svn: E170013: Unable to connect to a repository at URL 'https://subversion.xray.aps.anl.gov/pyGSAS/trunk'
svn: E670008: nodename nor servname provided, or not known

GSAS-II appears to be installed but failed to be updated. A likely reason
is a network access problem. If your web browser works, but this update did
not, the most common reason is you need to use a network proxy. Please
check with a network administrator or use http://www.whatismyproxy.com/

If installing from the gsas2full dist and your computer is not connected
to the internet, this error message can be ignored.

Running bootstrap from /Users/toby/g2full/GSASII at 2021-01-08 19:13:59.213766
	Id: $Id: bootstrap.py 4748 2021-01-08 04:22:55Z toby $
Python:     3.7.9
numpy:      1.18.5
**********************************************************************
Preloading matplotlib to build fonts...
Checking python packages...
Ready to bootstrap GSAS-II from repository
	https://subversion.xray.aps.anl.gov/pyGSAS/
to /Users/toby/g2full/GSASII
import of GSASIIpath completed
Successfully tested compiled routines
Byte-compiling all .py files...
done
running /Users/toby/g2full/GSASII/makeMacApp.py
/Users/toby/g2full/GSASII/GSAS-II.py

Created GSAS-II app (/Users/toby/g2full/GSASII/GSAS-II.app).
Viewing app in Finder so you can drag it to the dock if, you wish.
GSAS-II installer, version 4750 completed
*** Viewing GSAS-II app in Finder; you may wish to drag it to the dock.***
installation finished.
toby@macos-11 ~ % 

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