Changeset 897
- Timestamp:
- May 1, 2013 12:20:14 PM (11 years ago)
- File:
-
- 1 edited
Legend:
- Unmodified
- Added
- Removed
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trunk/help/gsasII.html
r868 r897 25 25 <o:Author>Von Dreele</o:Author> 26 26 <o:LastAuthor>Von Dreele</o:LastAuthor> 27 <o:Revision>11 2</o:Revision>28 <o:TotalTime>3 721</o:TotalTime>27 <o:Revision>114</o:Revision> 28 <o:TotalTime>3902</o:TotalTime> 29 29 <o:Created>2011-11-28T16:49:00Z</o:Created> 30 <o:LastSaved>2013-0 3-20T14:25:00Z</o:LastSaved>31 <o:Pages> 11</o:Pages>32 <o:Words>1 1347</o:Words>33 <o:Characters> 64678</o:Characters>30 <o:LastSaved>2013-05-01T17:14:00Z</o:LastSaved> 31 <o:Pages>2</o:Pages> 32 <o:Words>12902</o:Words> 33 <o:Characters>73548</o:Characters> 34 34 <o:Company>Argonne National Laboratory</o:Company> 35 <o:Lines> 538</o:Lines>36 <o:Paragraphs>1 51</o:Paragraphs>37 <o:CharactersWithSpaces> 75874</o:CharactersWithSpaces>35 <o:Lines>612</o:Lines> 36 <o:Paragraphs>172</o:Paragraphs> 37 <o:CharactersWithSpaces>86278</o:CharactersWithSpaces> 38 38 <o:Version>14.00</o:Version> 39 39 </o:DocumentProperties> … … 362 362 mso-font-signature:-536870145 1073743103 0 0 415 0;} 363 363 @font-face 364 {font-family:Calibri; 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1678 1782 mso-level-number-position:left; 1679 1783 text-indent:-.25in;} 1680 @list l1 71784 @list l19 1681 1785 {mso-list-id:1326516832; 1682 1786 mso-list-type:hybrid; 1683 1787 mso-list-template-ids:1433942448 67698703 67698713 67698715 67698703 67698713 67698715 67698703 67698713 67698715;} 1684 @list l1 7:level11788 @list l19:level1 1685 1789 {mso-level-tab-stop:none; 1686 1790 mso-level-number-position:left; 1687 1791 text-indent:-.25in;} 1688 @list l1 7:level21792 @list l19:level2 1689 1793 {mso-level-tab-stop:1.0in; 1690 1794 mso-level-number-position:left; 1691 1795 text-indent:-.25in;} 1692 @list l1 7:level31796 @list l19:level3 1693 1797 {mso-level-tab-stop:1.5in; 1694 1798 mso-level-number-position:left; 1695 1799 text-indent:-.25in;} 1696 @list l1 7:level41800 @list l19:level4 1697 1801 {mso-level-tab-stop:2.0in; 1698 1802 mso-level-number-position:left; 1699 1803 text-indent:-.25in;} 1700 @list l1 7:level51804 @list l19:level5 1701 1805 {mso-level-tab-stop:2.5in; 1702 1806 mso-level-number-position:left; 1703 1807 text-indent:-.25in;} 1704 @list l1 7:level61808 @list l19:level6 1705 1809 {mso-level-tab-stop:3.0in; 1706 1810 mso-level-number-position:left; 1707 1811 text-indent:-.25in;} 1708 @list l1 7:level71812 @list l19:level7 1709 1813 {mso-level-tab-stop:3.5in; 1710 1814 mso-level-number-position:left; 1711 1815 text-indent:-.25in;} 1712 @list l1 7:level81816 @list l19:level8 1713 1817 {mso-level-tab-stop:4.0in; 1714 1818 mso-level-number-position:left; 1715 1819 text-indent:-.25in;} 1716 @list l1 7:level91820 @list l19:level9 1717 1821 {mso-level-tab-stop:4.5in; 1718 1822 mso-level-number-position:left; 1719 1823 text-indent:-.25in;} 1720 @list l 181824 @list l20 1721 1825 {mso-list-id:1394309879; 1722 1826 mso-list-template-ids:326264828;} 1723 @list l 18:level11827 @list l20:level1 1724 1828 {mso-level-tab-stop:none; 1725 1829 mso-level-number-position:left; 1726 1830 text-indent:-.25in;} 1727 @list l 18:level21831 @list l20:level2 1728 1832 {mso-level-number-format:alpha-lower; 1729 1833 mso-level-tab-stop:1.0in; … … 1734 1838 mso-ansi-font-weight:normal; 1735 1839 mso-ansi-font-style:normal;} 1736 @list l 18:level31840 @list l20:level3 1737 1841 {mso-level-tab-stop:1.5in; 1738 1842 mso-level-number-position:left; 1739 1843 text-indent:-.25in;} 1740 @list l 18:level41844 @list l20:level4 1741 1845 {mso-level-number-format:alpha-lower; 1742 1846 mso-level-tab-stop:2.0in; 1743 1847 mso-level-number-position:left; 1744 1848 text-indent:-.25in;} 1745 @list l 18:level51849 @list l20:level5 1746 1850 {mso-level-tab-stop:2.5in; 1747 1851 mso-level-number-position:left; 1748 1852 text-indent:-.25in;} 1749 @list l 18:level61853 @list l20:level6 1750 1854 {mso-level-tab-stop:3.0in; 1751 1855 mso-level-number-position:left; 1752 1856 text-indent:-.25in;} 1753 @list l 18:level71857 @list l20:level7 1754 1858 {mso-level-tab-stop:3.5in; 1755 1859 mso-level-number-position:left; 1756 1860 text-indent:-.25in;} 1757 @list l 18:level81861 @list l20:level8 1758 1862 {mso-level-tab-stop:4.0in; 1759 1863 mso-level-number-position:left; 1760 1864 text-indent:-.25in;} 1761 @list l 18:level91865 @list l20:level9 1762 1866 {mso-level-tab-stop:4.5in; 1763 1867 mso-level-number-position:left; 1764 1868 text-indent:-.25in;} 1765 @list l 191869 @list l21 1766 1870 {mso-list-id:1413820461; 1767 1871 mso-list-type:hybrid; 1768 mso-list-template-ids: -39958251267698703 67698713 67698715 67698703 67698713 67698715 67698703 67698713 67698715;}1769 @list l 19:level11872 mso-list-template-ids:2031237610 67698703 67698713 67698715 67698703 67698713 67698715 67698703 67698713 67698715;} 1873 @list l21:level1 1770 1874 {mso-level-tab-stop:none; 1771 1875 mso-level-number-position:left; 1772 1876 margin-left:.25in; 1773 1877 text-indent:-.25in;} 1774 @list l 19:level21878 @list l21:level2 1775 1879 {mso-level-number-format:alpha-lower; 1776 1880 mso-level-tab-stop:none; … … 1778 1882 margin-left:.75in; 1779 1883 text-indent:-.25in;} 1780 @list l 19:level31884 @list l21:level3 1781 1885 {mso-level-number-format:roman-lower; 1782 1886 mso-level-tab-stop:none; … … 1784 1888 margin-left:1.25in; 1785 1889 text-indent:-9.0pt;} 1786 @list l 19:level41890 @list l21:level4 1787 1891 {mso-level-tab-stop:none; 1788 1892 mso-level-number-position:left; 1789 1893 margin-left:1.75in; 1790 1894 text-indent:-.25in;} 1791 @list l 19:level51895 @list l21:level5 1792 1896 {mso-level-number-format:alpha-lower; 1793 1897 mso-level-tab-stop:none; … … 1795 1899 margin-left:2.25in; 1796 1900 text-indent:-.25in;} 1797 @list l 19:level61901 @list l21:level6 1798 1902 {mso-level-number-format:roman-lower; 1799 1903 mso-level-tab-stop:none; … … 1801 1905 margin-left:2.75in; 1802 1906 text-indent:-9.0pt;} 1803 @list l 19:level71907 @list l21:level7 1804 1908 {mso-level-tab-stop:none; 1805 1909 mso-level-number-position:left; 1806 1910 margin-left:3.25in; 1807 1911 text-indent:-.25in;} 1808 @list l 19:level81912 @list l21:level8 1809 1913 {mso-level-number-format:alpha-lower; 1810 1914 mso-level-tab-stop:none; … … 1812 1916 margin-left:3.75in; 1813 1917 text-indent:-.25in;} 1814 @list l 19:level91918 @list l21:level9 1815 1919 {mso-level-number-format:roman-lower; 1816 1920 mso-level-tab-stop:none; … … 1818 1922 margin-left:4.25in; 1819 1923 text-indent:-9.0pt;} 1820 @list l2 01924 @list l22 1821 1925 {mso-list-id:1602683002; 1822 1926 mso-list-type:hybrid; 1823 1927 mso-list-template-ids:120980256 67698703 67698713 67698715 67698703 67698713 67698715 67698703 67698713 67698715;} 1824 @list l2 0:level11928 @list l22:level1 1825 1929 {mso-level-tab-stop:none; 1826 1930 mso-level-number-position:left; 1827 1931 text-indent:-.25in;} 1828 @list l2 0:level21932 @list l22:level2 1829 1933 {mso-level-number-format:alpha-lower; 1830 1934 mso-level-tab-stop:none; 1831 1935 mso-level-number-position:left; 1832 1936 text-indent:-.25in;} 1833 @list l2 0:level31937 @list l22:level3 1834 1938 {mso-level-tab-stop:1.5in; 1835 1939 mso-level-number-position:left; 1836 1940 text-indent:-.25in;} 1837 @list l2 0:level41941 @list l22:level4 1838 1942 {mso-level-tab-stop:2.0in; 1839 1943 mso-level-number-position:left; 1840 1944 text-indent:-.25in;} 1841 @list l2 0:level51945 @list l22:level5 1842 1946 {mso-level-tab-stop:2.5in; 1843 1947 mso-level-number-position:left; 1844 1948 text-indent:-.25in;} 1845 @list l2 0:level61949 @list l22:level6 1846 1950 {mso-level-tab-stop:3.0in; 1847 1951 mso-level-number-position:left; 1848 1952 text-indent:-.25in;} 1849 @list l2 0:level71953 @list l22:level7 1850 1954 {mso-level-tab-stop:3.5in; 1851 1955 mso-level-number-position:left; 1852 1956 text-indent:-.25in;} 1853 @list l2 0:level81957 @list l22:level8 1854 1958 {mso-level-tab-stop:4.0in; 1855 1959 mso-level-number-position:left; 1856 1960 text-indent:-.25in;} 1857 @list l2 0:level91961 @list l22:level9 1858 1962 {mso-level-tab-stop:4.5in; 1859 1963 mso-level-number-position:left; 1860 1964 text-indent:-.25in;} 1861 @list l2 11965 @list l23 1862 1966 {mso-list-id:1669404025; 1863 1967 mso-list-type:hybrid; 1864 1968 mso-list-template-ids:-1814001090 1141245230 67698713 67698715 67698703 67698713 67698715 67698703 67698713 67698715;} 1865 @list l2 1:level11969 @list l23:level1 1866 1970 {mso-level-number-format:alpha-lower; 1867 1971 mso-level-tab-stop:none; … … 1870 1974 text-indent:-.25in; 1871 1975 mso-ansi-font-weight:normal;} 1872 @list l2 1:level21976 @list l23:level2 1873 1977 {mso-level-tab-stop:1.0in; 1874 1978 mso-level-number-position:left; 1875 1979 text-indent:-.25in;} 1876 @list l2 1:level31980 @list l23:level3 1877 1981 {mso-level-tab-stop:112.5pt; 1878 1982 mso-level-number-position:left; 1879 1983 margin-left:112.5pt; 1880 1984 text-indent:-.25in;} 1881 @list l2 1:level41985 @list l23:level4 1882 1986 {mso-level-tab-stop:2.0in; 1883 1987 mso-level-number-position:left; 1884 1988 text-indent:-.25in;} 1885 @list l2 1:level51989 @list l23:level5 1886 1990 {mso-level-tab-stop:2.5in; 1887 1991 mso-level-number-position:left; 1888 1992 text-indent:-.25in;} 1889 @list l2 1:level61993 @list l23:level6 1890 1994 {mso-level-tab-stop:3.0in; 1891 1995 mso-level-number-position:left; 1892 1996 text-indent:-.25in;} 1893 @list l2 1:level71997 @list l23:level7 1894 1998 {mso-level-tab-stop:3.5in; 1895 1999 mso-level-number-position:left; 1896 2000 text-indent:-.25in;} 1897 @list l2 1:level82001 @list l23:level8 1898 2002 {mso-level-tab-stop:4.0in; 1899 2003 mso-level-number-position:left; 1900 2004 text-indent:-.25in;} 1901 @list l2 1:level92005 @list l23:level9 1902 2006 {mso-level-tab-stop:4.5in; 1903 2007 mso-level-number-position:left; 1904 2008 text-indent:-.25in;} 1905 @list l2 22009 @list l24 1906 2010 {mso-list-id:1753089587; 1907 2011 mso-list-template-ids:1555050902;} 1908 @list l2 2:level12012 @list l24:level1 1909 2013 {mso-level-tab-stop:none; 1910 2014 mso-level-number-position:left; 1911 2015 text-indent:-.25in;} 1912 @list l2 2:level22016 @list l24:level2 1913 2017 {mso-level-tab-stop:1.0in; 1914 2018 mso-level-number-position:left; 1915 2019 text-indent:-.25in;} 1916 @list l2 2:level32020 @list l24:level3 1917 2021 {mso-level-tab-stop:1.5in; 1918 2022 mso-level-number-position:left; 1919 2023 text-indent:-.25in;} 1920 @list l2 2:level42024 @list l24:level4 1921 2025 {mso-level-tab-stop:2.0in; 1922 2026 mso-level-number-position:left; 1923 2027 text-indent:-.25in;} 1924 @list l2 2:level52028 @list l24:level5 1925 2029 {mso-level-tab-stop:2.5in; 1926 2030 mso-level-number-position:left; 1927 2031 text-indent:-.25in;} 1928 @list l2 2:level62032 @list l24:level6 1929 2033 {mso-level-tab-stop:3.0in; 1930 2034 mso-level-number-position:left; 1931 2035 text-indent:-.25in;} 1932 @list l2 2:level72036 @list l24:level7 1933 2037 {mso-level-tab-stop:3.5in; 1934 2038 mso-level-number-position:left; 1935 2039 text-indent:-.25in;} 1936 @list l2 2:level82040 @list l24:level8 1937 2041 {mso-level-tab-stop:4.0in; 1938 2042 mso-level-number-position:left; 1939 2043 text-indent:-.25in;} 1940 @list l2 2:level92044 @list l24:level9 1941 2045 {mso-level-tab-stop:4.5in; 1942 2046 mso-level-number-position:left; 1943 2047 text-indent:-.25in;} 1944 @list l2 32048 @list l25 1945 2049 {mso-list-id:1773695911; 1946 2050 mso-list-type:hybrid; 1947 2051 mso-list-template-ids:-1704541642 595615172 67698713 67698715 67698703 67698713 67698715 67698703 67698713 67698715;} 1948 @list l2 3:level12052 @list l25:level1 1949 2053 {mso-level-tab-stop:none; 1950 2054 mso-level-number-position:left; 1951 2055 margin-left:.75in; 1952 2056 text-indent:-.25in;} 1953 @list l2 3:level22057 @list l25:level2 1954 2058 {mso-level-number-format:alpha-lower; 1955 2059 mso-level-tab-stop:none; … … 1957 2061 margin-left:1.25in; 1958 2062 text-indent:-.25in;} 1959 @list l2 3:level32063 @list l25:level3 1960 2064 {mso-level-number-format:roman-lower; 1961 2065 mso-level-tab-stop:none; … … 1963 2067 margin-left:1.75in; 1964 2068 text-indent:-9.0pt;} 1965 @list l2 3:level42069 @list l25:level4 1966 2070 {mso-level-tab-stop:none; 1967 2071 mso-level-number-position:left; 1968 2072 margin-left:2.25in; 1969 2073 text-indent:-.25in;} 1970 @list l2 3:level52074 @list l25:level5 1971 2075 {mso-level-number-format:alpha-lower; 1972 2076 mso-level-tab-stop:none; … … 1974 2078 margin-left:2.75in; 1975 2079 text-indent:-.25in;} 1976 @list l2 3:level62080 @list l25:level6 1977 2081 {mso-level-number-format:roman-lower; 1978 2082 mso-level-tab-stop:none; … … 1980 2084 margin-left:3.25in; 1981 2085 text-indent:-9.0pt;} 1982 @list l2 3:level72086 @list l25:level7 1983 2087 {mso-level-tab-stop:none; 1984 2088 mso-level-number-position:left; 1985 2089 margin-left:3.75in; 1986 2090 text-indent:-.25in;} 1987 @list l2 3:level82091 @list l25:level8 1988 2092 {mso-level-number-format:alpha-lower; 1989 2093 mso-level-tab-stop:none; … … 1991 2095 margin-left:4.25in; 1992 2096 text-indent:-.25in;} 1993 @list l2 3:level92097 @list l25:level9 1994 2098 {mso-level-number-format:roman-lower; 1995 2099 mso-level-tab-stop:none; … … 1997 2101 margin-left:4.75in; 1998 2102 text-indent:-9.0pt;} 1999 @list l24 2103 @list l26 2104 {mso-list-id:1840269000; 2105 mso-list-type:hybrid; 2106 mso-list-template-ids:120980256 67698703 67698713 67698715 67698703 67698713 67698715 67698703 67698713 67698715;} 2107 @list l26:level1 2108 {mso-level-tab-stop:none; 2109 mso-level-number-position:left; 2110 text-indent:-.25in;} 2111 @list l26:level2 2112 {mso-level-number-format:alpha-lower; 2113 mso-level-tab-stop:none; 2114 mso-level-number-position:left; 2115 text-indent:-.25in;} 2116 @list l26:level3 2117 {mso-level-tab-stop:1.5in; 2118 mso-level-number-position:left; 2119 text-indent:-.25in;} 2120 @list l26:level4 2121 {mso-level-tab-stop:2.0in; 2122 mso-level-number-position:left; 2123 text-indent:-.25in;} 2124 @list l26:level5 2125 {mso-level-tab-stop:2.5in; 2126 mso-level-number-position:left; 2127 text-indent:-.25in;} 2128 @list l26:level6 2129 {mso-level-tab-stop:3.0in; 2130 mso-level-number-position:left; 2131 text-indent:-.25in;} 2132 @list l26:level7 2133 {mso-level-tab-stop:3.5in; 2134 mso-level-number-position:left; 2135 text-indent:-.25in;} 2136 @list l26:level8 2137 {mso-level-tab-stop:4.0in; 2138 mso-level-number-position:left; 2139 text-indent:-.25in;} 2140 @list l26:level9 2141 {mso-level-tab-stop:4.5in; 2142 mso-level-number-position:left; 2143 text-indent:-.25in;} 2144 @list l27 2000 2145 {mso-list-id:2029942403; 2001 2146 mso-list-template-ids:1555050902;} 2002 @list l2 4:level12147 @list l27:level1 2003 2148 {mso-level-tab-stop:none; 2004 2149 mso-level-number-position:left; 2005 2150 text-indent:-.25in;} 2006 @list l2 4:level22151 @list l27:level2 2007 2152 {mso-level-tab-stop:1.0in; 2008 2153 mso-level-number-position:left; 2009 2154 text-indent:-.25in;} 2010 @list l2 4:level32155 @list l27:level3 2011 2156 {mso-level-tab-stop:1.5in; 2012 2157 mso-level-number-position:left; 2013 2158 text-indent:-.25in;} 2014 @list l2 4:level42159 @list l27:level4 2015 2160 {mso-level-tab-stop:2.0in; 2016 2161 mso-level-number-position:left; 2017 2162 text-indent:-.25in;} 2018 @list l2 4:level52163 @list l27:level5 2019 2164 {mso-level-tab-stop:2.5in; 2020 2165 mso-level-number-position:left; 2021 2166 text-indent:-.25in;} 2022 @list l2 4:level62167 @list l27:level6 2023 2168 {mso-level-tab-stop:3.0in; 2024 2169 mso-level-number-position:left; 2025 2170 text-indent:-.25in;} 2026 @list l2 4:level72171 @list l27:level7 2027 2172 {mso-level-tab-stop:3.5in; 2028 2173 mso-level-number-position:left; 2029 2174 text-indent:-.25in;} 2030 @list l2 4:level82175 @list l27:level8 2031 2176 {mso-level-tab-stop:4.0in; 2032 2177 mso-level-number-position:left; 2033 2178 text-indent:-.25in;} 2034 @list l2 4:level92179 @list l27:level9 2035 2180 {mso-level-tab-stop:4.5in; 2036 2181 mso-level-number-position:left; 2037 2182 text-indent:-.25in;} 2038 @list l2 52183 @list l28 2039 2184 {mso-list-id:2095858496; 2040 2185 mso-list-type:hybrid; 2041 2186 mso-list-template-ids:-2088890812 709683864 67698713 67698715 67698703 67698713 67698715 67698703 67698713 67698715;} 2042 @list l2 5:level12187 @list l28:level1 2043 2188 {mso-level-tab-stop:none; 2044 2189 mso-level-number-position:left; 2045 2190 text-indent:-.25in;} 2046 @list l2 5:level22191 @list l28:level2 2047 2192 {mso-level-tab-stop:1.0in; 2048 2193 mso-level-number-position:left; 2049 2194 text-indent:-.25in;} 2050 @list l2 5:level32195 @list l28:level3 2051 2196 {mso-level-tab-stop:1.5in; 2052 2197 mso-level-number-position:left; 2053 2198 text-indent:-.25in;} 2054 @list l2 5:level42199 @list l28:level4 2055 2200 {mso-level-tab-stop:2.0in; 2056 2201 mso-level-number-position:left; 2057 2202 text-indent:-.25in;} 2058 @list l2 5:level52203 @list l28:level5 2059 2204 {mso-level-tab-stop:2.5in; 2060 2205 mso-level-number-position:left; 2061 2206 text-indent:-.25in;} 2062 @list l2 5:level62207 @list l28:level6 2063 2208 {mso-level-tab-stop:3.0in; 2064 2209 mso-level-number-position:left; 2065 2210 text-indent:-.25in;} 2066 @list l2 5:level72211 @list l28:level7 2067 2212 {mso-level-tab-stop:3.5in; 2068 2213 mso-level-number-position:left; 2069 2214 text-indent:-.25in;} 2070 @list l2 5:level82215 @list l28:level8 2071 2216 {mso-level-tab-stop:4.0in; 2072 2217 mso-level-number-position:left; 2073 2218 text-indent:-.25in;} 2074 @list l2 5:level92219 @list l28:level9 2075 2220 {mso-level-tab-stop:4.5in; 2076 2221 mso-level-number-position:left; 2077 2222 text-indent:-.25in;} 2078 @list l2 62223 @list l29 2079 2224 {mso-list-id:2114591880; 2080 2225 mso-list-template-ids:-445226636;} 2081 @list l2 6:level12226 @list l29:level1 2082 2227 {mso-level-tab-stop:none; 2083 2228 mso-level-number-position:left; 2084 2229 text-indent:-.25in;} 2085 @list l2 6:level22230 @list l29:level2 2086 2231 {mso-level-number-format:alpha-lower; 2087 2232 mso-level-tab-stop:1.0in; 2088 2233 mso-level-number-position:left; 2089 2234 text-indent:-.25in;} 2090 @list l2 6:level32235 @list l29:level3 2091 2236 {mso-level-tab-stop:1.5in; 2092 2237 mso-level-number-position:left; 2093 2238 text-indent:-.25in;} 2094 @list l2 6:level42239 @list l29:level4 2095 2240 {mso-level-number-format:alpha-lower; 2096 2241 mso-level-tab-stop:2.0in; 2097 2242 mso-level-number-position:left; 2098 2243 text-indent:-.25in;} 2099 @list l2 6:level52244 @list l29:level5 2100 2245 {mso-level-tab-stop:2.5in; 2101 2246 mso-level-number-position:left; 2102 2247 text-indent:-.25in;} 2103 @list l2 6:level62248 @list l29:level6 2104 2249 {mso-level-tab-stop:3.0in; 2105 2250 mso-level-number-position:left; 2106 2251 text-indent:-.25in;} 2107 @list l2 6:level72252 @list l29:level7 2108 2253 {mso-level-tab-stop:3.5in; 2109 2254 mso-level-number-position:left; 2110 2255 text-indent:-.25in;} 2111 @list l2 6:level82256 @list l29:level8 2112 2257 {mso-level-tab-stop:4.0in; 2113 2258 mso-level-number-position:left; 2114 2259 text-indent:-.25in;} 2115 @list l2 6:level92260 @list l29:level9 2116 2261 {mso-level-tab-stop:4.5in; 2117 2262 mso-level-number-position:left; … … 2273 2418 as outlined below: <o:p></o:p></span></p> 2274 2419 2275 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l1 3level1 lfo1'><![if !supportLists]><span2420 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l15 level1 lfo1'><![if !supportLists]><span 2276 2421 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span 2277 2422 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]>Menu … … 2279 2424 2280 2425 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2281 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2426 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2282 2427 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 2283 2428 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2288 2433 class=SpellE>gpx</span> file (e.g. name.bak3.gpx) to recover a previous version 2289 2434 of your project. Remember to <b style='mso-bidi-font-weight:normal'>Save As</b>… 2290 to e.g. name.gpx to overwrite the current version. Otherwise you will get 2291 backupsof your backup file (e.g. name.bak3.bak0.gpx, etc.).</p>2292 2293 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2294 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2435 to e.g. name.gpx to overwrite the current version. Otherwise you will get backups 2436 of your backup file (e.g. name.bak3.bak0.gpx, etc.).</p> 2437 2438 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2439 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2295 2440 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span 2296 2441 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2303 2448 2304 2449 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2305 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2450 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2306 2451 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span 2307 2452 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2313 2458 2314 2459 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2315 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2460 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2316 2461 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span 2317 2462 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2322 2467 2323 2468 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2324 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2469 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2325 2470 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>e.<span 2326 2471 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2328 2473 style='mso-fareast-font-family:"Times New Roman"'> – Exit the GSAS-II 2329 2474 program; if there is a current project you will be asked if you want to save it 2330 first. Pressing the red X in the upper right (Windows) also exits (no save option)2331 GSAS-II; useful for escaping from GSAS-II if needed.</span></p>2332 2333 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 3level1 lfo1'><![if !supportLists]><b2475 first. Pressing the red X in the upper right (Windows) also exits (no save 2476 option) GSAS-II; useful for escaping from GSAS-II if needed.</span></p> 2477 2478 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l15 level1 lfo1'><![if !supportLists]><b 2334 2479 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2335 2480 style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'> … … 2338 2483 2339 2484 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2340 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2485 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2341 2486 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 2342 2487 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2351 2496 2352 2497 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2353 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2498 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2354 2499 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span 2355 2500 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2360 2505 2361 2506 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2362 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2507 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2363 2508 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span 2364 2509 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2370 2515 2371 2516 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2372 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2517 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2373 2518 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span 2374 2519 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2380 2525 2381 2526 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2382 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2527 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2383 2528 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>e.<span 2384 2529 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2393 2538 2394 2539 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2395 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2540 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2396 2541 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>f.<span 2397 2542 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2401 2546 2402 2547 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2403 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2548 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2404 2549 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>g.<span 2405 2550 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2409 2554 2410 2555 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2411 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2556 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2412 2557 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>h.<span 2413 2558 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2415 2560 item from the data tree. A dialog box with a list of choices is presented.</p> 2416 2561 2417 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 3level1 lfo1'><![if !supportLists]><span2562 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l15 level1 lfo1'><![if !supportLists]><span 2418 2563 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span 2419 2564 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]>Menu … … 2421 2566 2422 2567 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2423 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2568 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2424 2569 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 2425 2570 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2431 2576 2432 2577 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2433 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2578 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2434 2579 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span 2435 2580 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2451 2596 2452 2597 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2453 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2598 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2454 2599 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span 2455 2600 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2460 2605 2461 2606 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2462 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2607 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2463 2608 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span 2464 2609 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2467 2612 normal'><a href="#Controls">Controls</a></b> data tree item.</p> 2468 2613 2469 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 3level1 lfo1'><![if !supportLists]><span2614 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l15 level1 lfo1'><![if !supportLists]><span 2470 2615 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>4.<span 2471 2616 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]>Menu … … 2476 2621 2477 2622 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2478 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2623 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2479 2624 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 2480 2625 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2482 2627 2483 2628 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2484 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span2629 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span 2485 2630 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span 2486 2631 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2496 2641 2497 2642 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2498 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span2643 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span 2499 2644 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span 2500 2645 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2510 2655 2511 2656 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2512 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span2657 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span 2513 2658 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span 2514 2659 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2525 2670 2526 2671 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2527 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span2672 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span 2528 2673 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>4.<span 2529 2674 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2540 2685 2541 2686 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2542 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span2687 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span 2543 2688 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>5.<span 2544 2689 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2548 2693 2549 2694 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2550 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><b2695 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><b 2551 2696 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2552 2697 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> … … 2557 2702 2558 2703 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2559 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b2704 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b 2560 2705 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2561 2706 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> … … 2565 2710 class=SpellE>name.CIF</span>). The file name is found in a directory dialog; 2566 2711 you can change directories as needed. Only .CIF (or .<span class=SpellE>cif</span>) 2567 file names are shown. If the selected file has more than one powder pattern, a 2568 dialog is shown with the choices; only one can be chosen. If you want more than 2569 one, redo the <b style='mso-bidi-font-weight:normal'>Import/Powder Data/from 2570 CIF</b> <b style='mso-bidi-font-weight:normal'>file</b> command. <b 2712 file names are <span class=GramE>shown.;</span> only one can be chosen. If you 2713 want more than one, redo the <b style='mso-bidi-font-weight:normal'>Import/Powder 2714 Data/from CIF</b> <b style='mso-bidi-font-weight:normal'>file</b> command. <b 2571 2715 style='mso-bidi-font-weight:normal'><o:p></o:p></b></p> 2572 2716 2573 2717 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2574 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b2718 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b 2575 2719 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2576 2720 style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'> 2721 </span></span></span></b><![endif]><span class=GramE><b style='mso-bidi-font-weight: 2722 normal'>from</b></span><b style='mso-bidi-font-weight:normal'> GSAS-II <span 2723 class=SpellE>gpx</span> file</b> This reads powder patterns from a previously 2724 created GSAS-II <span class=SpellE>gpx</span> project file. If the selected 2725 file has more than one powder pattern, a dialog is shown with the choices; one 2726 or more can be selected. It will ask for an appropriate instrument parameter 2727 file to go with the selected powder data sets. <b style='mso-bidi-font-weight: 2728 normal'><o:p></o:p></b></p> 2729 2730 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2731 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b 2732 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2733 style='mso-list:Ignore'>3.<span style='font:7.0pt "Times New Roman"'> 2577 2734 </span></span></span></b><![endif]><span class=GramE><b style='mso-bidi-font-weight: 2578 2735 normal'>from</b></span><b style='mso-bidi-font-weight:normal'> GSAS file </b>This … … 2585 2742 2586 2743 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2587 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b2744 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b 2588 2745 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2589 style='mso-list:Ignore'> 3.<span style='font:7.0pt "Times New Roman"'> 2746 style='mso-list:Ignore'>4.<span style='font:7.0pt "Times New Roman"'> 2590 2747 </span></span></span></b><![endif]><span class=GramE><b style='mso-bidi-font-weight: 2591 2748 normal'>from</b></span><b style='mso-bidi-font-weight:normal'> <span … … 2598 2755 2599 2756 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2600 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span2601 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'> 4.<span2757 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><span 2758 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>5.<span 2602 2759 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 2603 2760 class=GramE><b style='mso-bidi-font-weight:normal'>guess</b></span><b … … 2607 2764 2608 2765 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2609 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><b2766 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><b 2610 2767 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2611 2768 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> … … 2616 2773 2617 2774 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2618 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b2775 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b 2619 2776 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2620 2777 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> … … 2628 2785 2629 2786 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2630 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b2787 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b 2631 2788 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2632 2789 style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'> … … 2640 2797 2641 2798 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2642 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b2799 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b 2643 2800 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2644 2801 style='mso-list:Ignore'>3.<span style='font:7.0pt "Times New Roman"'> … … 2652 2809 2653 2810 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.5in;mso-add-space: 2654 auto;text-indent:-.25in;mso-list:l1 3level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b2811 auto;text-indent:-.25in;mso-list:l15 level3 lfo1;tab-stops:list 1.5in'><![if !supportLists]><b 2655 2812 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 2656 2813 style='mso-list:Ignore'>4.<span style='font:7.0pt "Times New Roman"'> … … 2662 2819 the file.<b style='mso-bidi-font-weight:normal'><o:p></o:p></b></p> 2663 2820 2664 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 3level1 lfo1'><![if !supportLists]><span2821 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l15 level1 lfo1'><![if !supportLists]><span 2665 2822 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>5.<span 2666 2823 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]>Menu … … 2668 2825 2669 2826 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2670 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2827 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2671 2828 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 2672 2829 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2675 2832 2676 2833 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2677 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2834 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2678 2835 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span 2679 2836 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2684 2841 2685 2842 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2686 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2843 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2687 2844 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span 2688 2845 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2691 2848 2692 2849 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2693 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2850 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2694 2851 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span 2695 2852 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 2696 2853 style='mso-bidi-font-weight:normal'>Export PDF…</b> - This writes two 2697 2854 simple text files name.gr and <span class=SpellE>name.sq</span> containing g(r) 2698 and s(q), respectively as 2 <span class=SpellE>colums</span> of data; a header2699 on each indicated the source file name and the column headings. The name comes 2700 from the PDF entry inthe GSAS-II data tree.</p>2701 2702 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2703 auto;text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2855 and s(q), respectively as 2 columns of data; a header on each indicated the 2856 source file name and the column headings. The name comes from the PDF entry in 2857 the GSAS-II data tree.</p> 2858 2859 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2860 auto;text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2704 2861 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>e.<span 2705 2862 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2708 2865 2709 2866 <p class=MsoListParagraphCxSpLast style='margin-left:1.0in;mso-add-space:auto; 2710 text-indent:-.25in;mso-list:l1 3level2 lfo1'><![if !supportLists]><span2867 text-indent:-.25in;mso-list:l15 level2 lfo1'><![if !supportLists]><span 2711 2868 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>f.<span 2712 2869 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2754 2911 window provides the main controls for the refinement calculations in GSAS-II. 2755 2912 Two of the main refinement tools are the <span class=SpellE><span class=GramE>fortran</span></span> 2756 MINPACK <span class=SpellE>lmdif</span> and <span class=SpellE>lmder</span> 2757 algorithms wrapped in python as provided in the <span class=SpellE>Scipy</span> 2758 package and a third one is a python version utilizing only the <span 2759 class=SpellE>numpy</span> package. The purpose is to </span>minimize the sum of 2760 the squares of M<span style='mso-fareast-font-family:"Times New Roman"'> 2761 nonlinear functions in Nvariables by a modification of the <span class=SpellE>Levenberg</span>-Marquardt2913 MINPACK <span class=SpellE>lmdif</span> and <span class=SpellE>lmder</span> algorithms 2914 wrapped in python as provided in the <span class=SpellE>Scipy</span> package 2915 and a third one is a python version utilizing only the <span class=SpellE>numpy</span> 2916 package. The purpose is to </span>minimize the sum of the squares of M<span 2917 style='mso-fareast-font-family:"Times New Roman"'> nonlinear functions in N 2918 variables by a modification of the <span class=SpellE>Levenberg</span>-Marquardt 2762 2919 algorithm. The <span class=SpellE>lmdif</span> and <span class=SpellE>lmder</span> 2763 2920 routines were written by </span>Burton S. <span class=SpellE>Garbow</span>, … … 2771 2928 <h5><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h5> 2772 2929 2773 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l1 7level1 lfo2'><![if !supportLists]><span2930 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l19 level1 lfo2'><![if !supportLists]><span 2774 2931 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span 2775 2932 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2783 2940 Hessian’ for routine work.<o:p></o:p></span></p> 2784 2941 2785 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 7level1 lfo2'><![if !supportLists]><span2942 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l19 level1 lfo2'><![if !supportLists]><span 2786 2943 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span 2787 2944 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2793 2950 to 1.0.<o:p></o:p></span></p> 2794 2951 2795 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 7level1 lfo2'><![if !supportLists]><span2952 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l19 level1 lfo2'><![if !supportLists]><span 2796 2953 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span 2797 2954 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2805 2962 performance.<o:p></o:p></span></p> 2806 2963 2807 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 7level1 lfo2'><![if !supportLists]><span2964 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l19 level1 lfo2'><![if !supportLists]><span 2808 2965 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>4.<span 2809 2966 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2817 2974 cycles.<o:p></o:p></span></p> 2818 2975 2819 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l1 7level1 lfo2'><![if !supportLists]><span2976 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l19 level1 lfo2'><![if !supportLists]><span 2820 2977 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>5.<span 2821 2978 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2836 2993 <p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This 2837 2994 window shows the constraints to be used in a refinement. It is organized into 2838 three tabbed pages. ‘Phase constraints’ contain those involving parameters2839 that describe aspects of the crystalline phases to be used in the refinement 2840 (e.g. atom coordinates, thermal motion and site fraction parameters). 2841 ‘Histogram/Phase constraints’ are those which describe aspects of 2842 the pattern that depend on both the phase and the data set used in the 2843 refinement (e.g. </span><span style='font-family:Symbol;mso-fareast-font-family:2995 three tabbed pages. ‘Phase constraints’ contain those involving 2996 parameters that describe aspects of the crystalline phases to be used in the 2997 refinement (e.g. atom coordinates, thermal motion and site fraction 2998 parameters). ‘Histogram/Phase constraints’ are those which describe 2999 aspects of the pattern that depend on both the phase and the data set used in 3000 the refinement (e.g. </span><span style='font-family:Symbol;mso-fareast-font-family: 2844 3001 "Times New Roman"'>m</span><span style='mso-fareast-font-family:"Times New Roman"'>strain 2845 3002 and crystallite size parameters). ‘Histogram constraints’ are those … … 2849 3006 <h5><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h5> 2850 3007 2851 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l2 0level1 lfo3'><![if !supportLists]><span3008 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l22 level1 lfo3'><![if !supportLists]><span 2852 3009 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span 2853 3010 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 2854 style='mso-fareast-font-family:"Times New Roman"'>Select the tab for the parameter2855 types you wish to constrain. Each will have the same possibilities in the 2856 ‘<b style='mso-bidi-font-weight:normal'>Edit’</b> menu.<o:p></o:p></span></p>2857 2858 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l2 0level1 lfo3'><![if !supportLists]><span3011 style='mso-fareast-font-family:"Times New Roman"'>Select the tab for the 3012 parameter types you wish to constrain. Each will have the same possibilities in 3013 the ‘<b style='mso-bidi-font-weight:normal'>Edit’</b> menu.<o:p></o:p></span></p> 3014 3015 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l22 level1 lfo3'><![if !supportLists]><span 2859 3016 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span 2860 3017 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2863 3020 2864 3021 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2865 auto;text-indent:-.25in;mso-list:l2 0level2 lfo3'><![if !supportLists]><span3022 auto;text-indent:-.25in;mso-list:l22 level2 lfo3'><![if !supportLists]><span 2866 3023 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 2867 3024 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2881 3038 2882 3039 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2883 auto;text-indent:-.25in;mso-list:l2 0level2 lfo3'><![if !supportLists]><span3040 auto;text-indent:-.25in;mso-list:l22 level2 lfo3'><![if !supportLists]><span 2884 3041 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span 2885 3042 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2900 3057 2901 3058 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2902 auto;text-indent:-.25in;mso-list:l2 0level2 lfo3'><![if !supportLists]><span3059 auto;text-indent:-.25in;mso-list:l22 level2 lfo3'><![if !supportLists]><span 2903 3060 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span 2904 3061 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2918 3075 2919 3076 <p class=MsoListParagraphCxSpLast style='margin-left:1.0in;mso-add-space:auto; 2920 text-indent:-.25in;mso-list:l2 0level2 lfo3'><![if !supportLists]><span3077 text-indent:-.25in;mso-list:l22 level2 lfo3'><![if !supportLists]><span 2921 3078 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span 2922 3079 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2938 3095 “fitted” during the refinement.<o:p></o:p></span></p> 2939 3096 2940 <h5><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h5> 2941 2942 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l11 level1 lfo4'><![if !supportLists]><span 3097 <h5 style='tab-stops:125.25pt'><span style='mso-fareast-font-family:"Times New Roman"'>What 3098 can I do here?<span style='mso-tab-count:1'> </span><o:p></o:p></span></h5> 3099 3100 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l13 level1 lfo4'><![if !supportLists]><span 2943 3101 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span 2944 3102 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2947 3105 ‘<b style='mso-bidi-font-weight:normal'>Edit’</b> menu.<o:p></o:p></span></p> 2948 3106 2949 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 1level1 lfo4'><![if !supportLists]><span3107 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l13 level1 lfo4'><![if !supportLists]><span 2950 3108 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span 2951 3109 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2955 3113 Default value for the weight factor is 1.0.<o:p></o:p></span></p> 2956 3114 2957 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 1level1 lfo4'><![if !supportLists]><span3115 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l13 level1 lfo4'><![if !supportLists]><span 2958 3116 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span 2959 3117 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2961 3119 use the restraints in subsequent refinements. Default is to use the restraints.<o:p></o:p></span></p> 2962 3120 2963 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 1level1 lfo4'><![if !supportLists]><span3121 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l13 level1 lfo4'><![if !supportLists]><span 2964 3122 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>4.<span 2965 3123 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2967 3125 range used to find the bonds/angles that meet your criteria for restraint.<o:p></o:p></span></p> 2968 3126 2969 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 1level1 lfo4'><![if !supportLists]><span3127 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l13 level1 lfo4'><![if !supportLists]><span 2970 3128 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>5.<span 2971 3129 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2978 3136 by the weight factor).<o:p></o:p></span></p> 2979 3137 2980 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 1level1 lfo4'><![if !supportLists]><span3138 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l13 level1 lfo4'><![if !supportLists]><span 2981 3139 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>6.<span 2982 3140 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 2986 3144 2987 3145 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2988 auto;text-indent:-.25in;mso-list:l1 1level2 lfo4'><![if !supportLists]><span3146 auto;text-indent:-.25in;mso-list:l13 level2 lfo4'><![if !supportLists]><span 2989 3147 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 2990 3148 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 2996 3154 2997 3155 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 2998 auto;text-indent:-.25in;mso-list:l1 1level2 lfo4'><![if !supportLists]><span3156 auto;text-indent:-.25in;mso-list:l13 level2 lfo4'><![if !supportLists]><span 2999 3157 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span 3000 3158 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 3007 3165 3008 3166 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3009 auto;text-indent:-.25in;mso-list:l1 1level2 lfo4'><![if !supportLists]><span3167 auto;text-indent:-.25in;mso-list:l13 level2 lfo4'><![if !supportLists]><span 3010 3168 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span 3011 3169 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 3018 3176 3019 3177 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3020 auto;text-indent:-.25in;mso-list:l1 1level2 lfo4'><![if !supportLists]><span3178 auto;text-indent:-.25in;mso-list:l13 level2 lfo4'><![if !supportLists]><span 3021 3179 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span 3022 3180 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 3038 3196 3039 3197 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3040 auto;text-indent:-.25in;mso-list:l1 1level2 lfo4'><![if !supportLists]><span3198 auto;text-indent:-.25in;mso-list:l13 level2 lfo4'><![if !supportLists]><span 3041 3199 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>e.<span 3042 3200 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 3047 3205 3048 3206 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3049 auto;text-indent:-.25in;mso-list:l1 1level2 lfo4'><![if !supportLists]><span3207 auto;text-indent:-.25in;mso-list:l13 level2 lfo4'><![if !supportLists]><span 3050 3208 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>f.<span 3051 3209 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 3057 3215 3058 3216 <p class=MsoListParagraphCxSpLast style='margin-left:1.0in;mso-add-space:auto; 3059 text-indent:-.25in;mso-list:l1 1level2 lfo4'><![if !supportLists]><span3217 text-indent:-.25in;mso-list:l13 level2 lfo4'><![if !supportLists]><span 3060 3218 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>g.<span 3061 3219 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 3066 3224 restraints.<o:p></o:p></span></p> 3067 3225 3226 <h4><a name="Rigid_bodies"></a><a name="_Ref355170529"></a><a 3227 name="_Rigid_bodies"></a><span style='mso-bookmark:Rigid_bodies'><span 3228 style='mso-bookmark:_Ref355170529'><span style='mso-fareast-font-family:"Times New Roman"'>Rigid 3229 bodies</span></span></span><span style='mso-bookmark:Rigid_bodies'><span 3230 style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></span></h4> 3231 3232 <span style='mso-bookmark:Rigid_bodies'></span> 3233 3234 <p class=MsoNormal>This window shows the rigid body models that have been 3235 entered into GSAS-II for this project. There are two tabs; one is for vector 3236 style rigid bodies and the other is for flexible “Residue” rigid 3237 bodies. Note that these rigid bodies must be inserted into one of the phases 3238 before it can take effect in the crystal structure description.</p> 3239 3240 <h5 style='tab-stops:125.25pt'><span style='mso-fareast-font-family:"Times New Roman"'>What 3241 can I do here?<span style='mso-tab-count:1'> </span><o:p></o:p></span></h5> 3242 3243 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l26 level1 lfo29'><![if !supportLists]><span 3244 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span 3245 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 3246 style='mso-fareast-font-family:"Times New Roman"'>Select the tab for the rigid 3247 body type you wish to use. Each will have the different possibilities in the 3248 ‘<b style='mso-bidi-font-weight:normal'>Edit’</b> menu depending on 3249 whether a rigid body has been defined.<o:p></o:p></span></p> 3250 3251 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l26 level1 lfo29'><![if !supportLists]><span 3252 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span 3253 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 3254 style='mso-fareast-font-family:"Times New Roman"'>Menu ‘<b 3255 style='mso-bidi-font-weight:normal'>Edit</b>’ – the entries listed 3256 below depend on which type of rigid body is selected.<o:p></o:p></span></p> 3257 3258 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3259 auto;text-indent:-.25in;mso-list:l26 level2 lfo29'><![if !supportLists]><b 3260 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><span 3261 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 3262 </span></span></span></b><![endif]><b style='mso-bidi-font-weight:normal'><span 3263 style='mso-fareast-font-family:"Times New Roman"'>Add rigid body</span></b><span 3264 style='mso-fareast-font-family:"Times New Roman"'> – (Vector rigid 3265 bodies) this creates a vector description of a rigid body. A dialog box asks 3266 the number of atoms (>2) and the number of vectors required to create the 3267 rigid body. An entry will be created showing a magnitude with the vector set to 3268 be applied for each vector needed to develop the rigid body.<b 3269 style='mso-bidi-font-weight:normal'><o:p></o:p></b></span></p> 3270 3271 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3272 auto;text-indent:-.25in;mso-list:l26 level2 lfo29'><![if !supportLists]><span 3273 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span 3274 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 3275 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Import 3276 XYZ</span></b><span style='mso-fareast-font-family:"Times New Roman"'> – 3277 (Residue rigid bodies) this reads a text file containing a set of Cartesian coordinates 3278 describing a rigid body model. Each line has atom type (e.g. C, Na, etc.) and 3279 Cartesian X, Y and Z.<o:p></o:p></span></p> 3280 3281 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3282 auto;text-indent:-.25in;mso-list:l26 level2 lfo29'><![if !supportLists]><span 3283 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span 3284 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 3285 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Define 3286 sequence</span></b><span style='mso-fareast-font-family:"Times New Roman"'> – 3287 (Residue rigid bodies) this defines a variable torsion angle in a sequence of 3288 dialog boxes. The first one asks for the origin and the second asks for the 3289 pivot atom for the torsion from the nearest neighbors to the origin atom; the 3290 atoms that ride on the selected torsion are automatically found from their bond 3291 lengths.<o:p></o:p></span></p> 3292 3293 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3294 auto;text-indent:-.25in;mso-list:l26 level2 lfo29'><![if !supportLists]><span 3295 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span 3296 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 3297 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Import 3298 residues</span></b><span style='mso-fareast-font-family:"Times New Roman"'> – 3299 (Residue rigid bodies) this reads a predetermined macro file that contains 3300 standard (<span class=SpellE>Engh</span> & Huber) coordinates for the amino 3301 acids found in natural proteins along with predetermined variable torsion angle 3302 definitions.<o:p></o:p></span></p> 3303 3304 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l26 level1 lfo29'><![if !supportLists]><span 3305 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span 3306 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 3307 style='mso-fareast-font-family:"Times New Roman"'>Once a rigid body is defined 3308 you can plot it, change its name or manipulate any torsion angle to see the 3309 effect on the plot.<o:p></o:p></span></p> 3310 3311 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l26 level1 lfo29'><![if !supportLists]><span 3312 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>4.<span 3313 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 3314 style='mso-fareast-font-family:"Times New Roman"'>The translation magnitudes in 3315 a vector rigid body can be refined.<o:p></o:p></span></p> 3316 3068 3317 <h4><a name=Sequential></a><u><span style='mso-fareast-font-family:"Times New Roman"'>Sequential</span></u><span 3069 3318 style='mso-fareast-font-family:"Times New Roman"'> refinement results<o:p></o:p></span></h4> … … 3078 3327 <h5><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h5> 3079 3328 3080 <h5 style='margin-left:.75in;text-indent:-.25in;mso-list:l2 3level1 lfo5'><![if !supportLists]><span3329 <h5 style='margin-left:.75in;text-indent:-.25in;mso-list:l25 level1 lfo5'><![if !supportLists]><span 3081 3330 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3082 3331 normal;mso-bidi-font-weight:bold'><span style='mso-list:Ignore'>1.<span … … 3084 3333 style='mso-fareast-font-family:"Times New Roman";color:windowtext'>Select a row</span><span 3085 3334 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3086 normal;mso-bidi-font-weight:bold'> – this will display the variance-covariance3087 matrix for the refinement with that data set.<o:p></o:p></span></h5>3088 3089 <h5 style='margin-left:.75in;text-indent:-.25in;mso-list:l2 3level1 lfo5'><![if !supportLists]><span3335 normal;mso-bidi-font-weight:bold'> – this will display the 3336 variance-covariance matrix for the refinement with that data set.<o:p></o:p></span></h5> 3337 3338 <h5 style='margin-left:.75in;text-indent:-.25in;mso-list:l25 level1 lfo5'><![if !supportLists]><span 3090 3339 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3091 3340 normal;mso-bidi-font-weight:bold'><span style='mso-list:Ignore'>2.<span … … 3097 3346 are also shown.<o:p></o:p></span></h5> 3098 3347 3099 <h5 style='margin-left:.75in;text-indent:-.25in;mso-list:l2 3level1 lfo5'><![if !supportLists]><span3348 <h5 style='margin-left:.75in;text-indent:-.25in;mso-list:l25 level1 lfo5'><![if !supportLists]><span 3100 3349 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3101 3350 normal;mso-bidi-font-weight:bold'><span style='mso-list:Ignore'>3.<span … … 3107 3356 normal;mso-bidi-font-weight:bold'><o:p></o:p></span></h5> 3108 3357 3109 <h5 style='margin-left:1.25in;text-indent:-.25in;mso-list:l2 3level2 lfo5'><![if !supportLists]><span3358 <h5 style='margin-left:1.25in;text-indent:-.25in;mso-list:l25 level2 lfo5'><![if !supportLists]><span 3110 3359 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3111 3360 normal;mso-bidi-font-weight:bold'><span style='mso-list:Ignore'>a.<span … … 3123 3372 ‘PWDR’, ’HKLF’, ‘IMG’, or ‘PDF’ 3124 3373 and usually a file name. These constitute the data sets 3125 (‘Histograms’) to be used by GSAS-II for analysis. Selection of 3126 these items does not produce any information in the data window but does 3127 d isplay the data in the Plots Window. They are described below.</p>3374 (‘Histograms’) to be used by GSAS-II for analysis. Selection of these 3375 items does not produce any information in the data window but does display the 3376 data in the Plots Window. They are described below.</p> 3128 3377 3129 3378 <h3><a name="PWD_Analysis"></a>Powder Histograms - PWDR</h3> … … 3139 3388 style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></span></h5> 3140 3389 3141 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l2 4level1 lfo6'><span3390 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l27 level1 lfo6'><span 3142 3391 style='mso-bookmark:Comments'><![if !supportLists]><span style='mso-fareast-font-family: 3143 3392 "Times New Roman"'><span style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> … … 3146 3395 3147 3396 <p class=MsoListParagraphCxSpLast style='margin-left:1.0in;mso-add-space:auto; 3148 text-indent:-.25in;mso-list:l2 1level1 lfo7'><span style='mso-bookmark:Comments'><![if !supportLists]><span3397 text-indent:-.25in;mso-list:l23 level1 lfo7'><span style='mso-bookmark:Comments'><![if !supportLists]><span 3149 3398 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 3150 3399 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 3183 3432 <h5><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h5> 3184 3433 3185 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l 4level1 lfo8'><![if !supportLists]><span3434 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l5 level1 lfo8'><![if !supportLists]><span 3186 3435 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span 3187 3436 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 3191 3440 changed (the background on the box will be blue or have a black border or a 3192 3441 vertical bar will appear in the value), then enter the new value and press 3193 Enter or click the mouse elsewhere in the Background window. This will set the3194 newvalue.<o:p></o:p></span></p>3195 3196 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l 4level1 lfo8'><![if !supportLists]><span3442 Enter or click the mouse elsewhere in the Limits window. This will set the new 3443 value.<o:p></o:p></span></p> 3444 3445 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l5 level1 lfo8'><![if !supportLists]><span 3197 3446 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span 3198 3447 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 3199 style='mso-fareast-font-family:"Times New Roman"'>Modify the values of ‘changed’;3200 this can be done on the plot by dragging the limit bars (left – vertical 3201 green dashed line, right – vertical red dashed line) into position. A 3202 l eft or right mouse click on a data point on the plot will set the associated3203 limit. In either case the appropriate value on the ‘changed’ row 3204 will be updated immediately.<o:p></o:p></span></p>3205 3206 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l 4level1 lfo8'><![if !supportLists]><span3448 style='mso-fareast-font-family:"Times New Roman"'>Modify the values of 3449 ‘changed’; this can be done on the plot by dragging the limit bars 3450 (left – vertical green dashed line, right – vertical red dashed 3451 line) into position. A left or right mouse click on a data point on the plot 3452 will set the associated limit. In either case the appropriate value on the 3453 ‘changed’ row will be updated immediately.<o:p></o:p></span></p> 3454 3455 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l5 level1 lfo8'><![if !supportLists]><span 3207 3456 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span 3208 3457 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 3211 3460 3212 3461 <p class=MsoListParagraphCxSpLast style='margin-left:1.0in;mso-add-space:auto; 3213 text-indent:-.25in;mso-list:l 4level2 lfo8;tab-stops:list 1.0in'><![if !supportLists]><span3462 text-indent:-.25in;mso-list:l5 level2 lfo8;tab-stops:list 1.0in'><![if !supportLists]><span 3214 3463 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 3215 3464 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 3216 3465 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Copy</span></b><span 3217 style='mso-fareast-font-family:"Times New Roman"'> – this copies the 3218 limitsshown to other selected powder patterns. If used, a dialog box (Copy3466 style='mso-fareast-font-family:"Times New Roman"'> – this copies the limits 3467 shown to other selected powder patterns. If used, a dialog box (Copy 3219 3468 Parameters) will appear showing the list of available powder patterns, you can 3220 3469 copy the limits parameters to any or all of them; select ‘All’ to … … 3290 3539 3291 3540 <p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>3). 3292 A set of individual Bragg peaks using the pseudo-Voigt profile function as their3293 shapes. Their parameters are ‘<span class=SpellE>pos</span>’,3541 A set of individual Bragg peaks using the pseudo-Voigt profile function as 3542 their shapes. Their parameters are ‘<span class=SpellE>pos</span>’, 3294 3543 ’<span class=SpellE>int</span>’, ‘sig’ & 3295 3544 ‘gam’; each can be selected for refinement. The default values for … … 3299 3548 <h5><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h5> 3300 3549 3301 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l2 2level1 lfo9'><![if !supportLists]><span3550 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l24 level1 lfo9'><![if !supportLists]><span 3302 3551 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span 3303 3552 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 3306 3555 3307 3556 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3308 auto;text-indent:-.25in;mso-list:l 3level1 lfo10'><![if !supportLists]><span3557 auto;text-indent:-.25in;mso-list:l4 level1 lfo10'><![if !supportLists]><span 3309 3558 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 3310 3559 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 3318 3567 3319 3568 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3320 auto;text-indent:-.25in;mso-list:l 3level1 lfo10'><![if !supportLists]><span3569 auto;text-indent:-.25in;mso-list:l4 level1 lfo10'><![if !supportLists]><span 3321 3570 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span 3322 3571 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b … … 3330 3579 ‘Cancel’ to cancel the operation.<o:p></o:p></span></p> 3331 3580 3332 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l2 2level1 lfo9'><![if !supportLists]><span3581 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l24 level1 lfo9'><![if !supportLists]><span 3333 3582 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span 3334 3583 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 3336 3585 Background function from the pull down tab.<o:p></o:p></span></p> 3337 3586 3338 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l2 2level1 lfo9'><![if !supportLists]><span3587 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l24 level1 lfo9'><![if !supportLists]><span 3339 3588 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span 3340 3589 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 3342 3591 refine the background coefficients.<o:p></o:p></span></p> 3343 3592 3344 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l2 2level1 lfo9'><![if !supportLists]><span3593 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l24 level1 lfo9'><![if !supportLists]><span 3345 3594 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>4.<span 3346 3595 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 3348 3597 background coefficients to be used (1-36).<o:p></o:p></span></p> 3349 3598 3350 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l2 2level1 lfo9'><![if !supportLists]><span3599 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l24 level1 lfo9'><![if !supportLists]><span 3351 3600 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>5.<span 3352 3601 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 3355 3604 mouse elsewhere in the Background window. This will set the new value.<o:p></o:p></span></p> 3356 3605 3357 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l2 2level1 lfo9'><![if !supportLists]><span3606 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l24 level1 lfo9'><![if !supportLists]><span 3358 3607 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>6.<span 3359 3608 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 3364 3613 with the ‘A’ coefficients.<o:p></o:p></span></p> 3365 3614 3366 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l2 2level1 lfo9'><![if !supportLists]><span3615 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l24 level1 lfo9'><![if !supportLists]><span 3367 3616 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>7.<span 3368 3617 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span … … 3383 3632 style='color:#0070C0'><a href="#Peak_List">Peak_List</a></span></span></span></p> 3384 3633 3385 <p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"; 3386 color:#0070C0'><a href="#Peak_List"><span style='color:#0070C0;text-decoration: 3387 none;text-underline:none'>’</span><span style='color:windowtext; 3388 text-decoration:none;text-underline:none'>. <o:p></o:p></span></a></span></p> 3634 <a href="#Peak_List"><span style='font-size:12.0pt;font-family:"Times New Roman","serif"; 3635 mso-fareast-font-family:"Times New Roman";color:#0070C0;mso-ansi-language:EN-US; 3636 mso-fareast-language:EN-US;mso-bidi-language:AR-SA;text-decoration:none; 3637 text-underline:none'>’</span><span style='font-size:12.0pt;font-family: 3638 "Times New Roman","serif";mso-fareast-font-family:"Times New Roman";color:windowtext; 3639 mso-ansi-language:EN-US;mso-fareast-language:EN-US;mso-bidi-language:AR-SA; 3640 text-decoration:none;text-underline:none'>. </span></a><span 3641 class=MsoHyperlink><span style='font-size:12.0pt;font-family:"Times New Roman","serif"; 3642 mso-fareast-font-family:"Times New Roman";mso-fareast-theme-font:minor-fareast; 3643 color:windowtext;mso-ansi-language:EN-US;mso-fareast-language:EN-US;mso-bidi-language: 3644 AR-SA;text-decoration:none;text-underline:none'><o:p></o:p></span></span> 3389 3645 3390 3646 <h5><span style='mso-fareast-font-family:"Times New Roman"'><a href="#Peak_List"><span 3391 3647 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 3392 3648 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>What 3393 can I do here?</span></span><span style='mso-fareast-font-family:"Times New Roman"; 3394 mso-fareast-theme-font:minor-fareast;color:#00B0F0;text-decoration:none; 3395 text-underline:none'><o:p></o:p></span></a></span></h5> 3396 3397 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l9 level1 lfo11'><span 3398 style='mso-fareast-font-family:"Times New Roman"'><a href="#Peak_List"><![if !supportLists]><span 3649 can I do here?</span></span></a></span><span class=MsoHyperlink><span 3650 style='color:#00B0F0;text-decoration:none;text-underline:none'><o:p></o:p></span></span></h5> 3651 3652 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l10 level1 lfo11'><![if !supportLists]><span 3653 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3654 color:windowtext;text-decoration:none;text-underline:none'><span 3655 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> 3656 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 3657 "Times New Roman"'><a href="#Peak_List"><span style='color:windowtext; 3658 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Menu 3659 ‘<b style='mso-bidi-font-weight:normal'>Operations</b>’ –</span></span></a><span 3660 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 3661 text-underline:none'><o:p></o:p></span></span></span></p> 3662 3663 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3664 auto;text-indent:-.25in;mso-list:l20 level2 lfo12;tab-stops:list 1.0in'><![if !supportLists]><span 3665 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3666 color:windowtext;text-decoration:none;text-underline:none'><span 3667 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 3668 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 3669 style='mso-fareast-font-family:"Times New Roman"'><a href="#Peak_List"><span 3399 3670 style='color:windowtext;text-decoration:none;text-underline:none'><span 3400 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> 3401 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3402 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Menu 3403 ‘<b style='mso-bidi-font-weight:normal'>Operations</b>’ –</span><o:p></o:p></span></a></span></p> 3404 3405 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3406 auto;text-indent:-.25in;mso-list:l18 level2 lfo12;tab-stops:list 1.0in'><b 3407 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 3408 href="#Peak_List"><![if !supportLists]><span style='color:windowtext; 3409 font-weight:normal;text-decoration:none;text-underline:none'><span 3410 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 3411 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3412 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Load 3671 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Load 3413 3672 profile… <span style='font-weight:normal'>- loads a GSAS-II instrument 3414 parameter file (<span class=SpellE>name.instprm</span>), replacing the existing 3415 instrument parameter values. All refinement flags are unset.</span></span><o:p></o:p></span></a></span></b></p> 3416 3417 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3418 auto;text-indent:-.25in;mso-list:l18 level2 lfo12;tab-stops:list 1.0in'><b 3419 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 3420 href="#Peak_List"><![if !supportLists]><span style='color:windowtext; 3421 font-weight:normal;text-decoration:none;text-underline:none'><span 3673 parameter file (name.instprm), replacing the existing instrument parameter 3674 values. All refinement flags are unset.</span></span></span></a><span 3675 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 3676 text-underline:none'><o:p></o:p></span></span></span></b></p> 3677 3678 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3679 auto;text-indent:-.25in;mso-list:l20 level2 lfo12;tab-stops:list 1.0in'><![if !supportLists]><span 3680 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3681 color:windowtext;text-decoration:none;text-underline:none'><span 3422 3682 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> 3423 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3424 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Save 3683 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 3684 style='mso-fareast-font-family:"Times New Roman"'><a href="#Peak_List"><span 3685 style='color:windowtext;text-decoration:none;text-underline:none'><span 3686 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Save 3425 3687 profile… - <span style='font-weight:normal'>saves the current instrument 3426 parameter values in a simple text file (<span class=SpellE>name.instprm</span>); 3427 you will be prompted for the file name – do not change the extension. 3428 This file may be edited but heed the warning to not change the parameter names, 3429 the order of the parameter records or add new parameter records as this will 3430 invalidate the file. You may only change the numeric values if necessary. You 3431 can change or add comment records (begins with ‘#’).</span></span><o:p></o:p></span></a></span></b></p> 3432 3433 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3434 auto;text-indent:-.25in;mso-list:l18 level2 lfo12;tab-stops:list 1.0in'><b 3435 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 3436 href="#Peak_List"><![if !supportLists]><span style='color:windowtext; 3437 font-weight:normal;text-decoration:none;text-underline:none'><span 3688 parameter values in a simple text file (name.instprm); you will be prompted for 3689 the file name – do not change the extension. This file may be edited but 3690 heed the warning to not change the parameter names, the order of the parameter 3691 records or add new parameter records as this will invalidate the file. You may 3692 only change the numeric values if necessary. You can change or add comment 3693 records (begins with ‘#’).</span></span></span></a><span 3694 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 3695 text-underline:none'><o:p></o:p></span></span></span></b></p> 3696 3697 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3698 auto;text-indent:-.25in;mso-list:l20 level2 lfo12;tab-stops:list 1.0in'><![if !supportLists]><span 3699 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3700 color:windowtext;text-decoration:none;text-underline:none'><span 3438 3701 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> 3439 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3440 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Reset 3441 profile <span style='font-weight:normal'>– resets the values for the instrument 3442 parameters to the default values shown in parentheses for each entry.</span></span><o:p></o:p></span></a></span></b></p> 3443 3444 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3445 auto;text-indent:-.25in;mso-list:l18 level2 lfo12;tab-stops:list 1.0in'><b 3446 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 3447 href="#Peak_List"><![if !supportLists]><span style='color:windowtext; 3448 font-weight:normal;text-decoration:none;text-underline:none'><span 3702 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 3703 style='mso-fareast-font-family:"Times New Roman"'><a href="#Peak_List"><span 3704 style='color:windowtext;text-decoration:none;text-underline:none'><span 3705 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Reset 3706 profile <span style='font-weight:normal'>– resets the values for the 3707 instrument parameters to the default values shown in parentheses for each 3708 entry.</span></span></span></a><span class=MsoHyperlink><span style='color: 3709 windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></b></p> 3710 3711 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3712 auto;text-indent:-.25in;mso-list:l20 level2 lfo12;tab-stops:list 1.0in'><![if !supportLists]><span 3713 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3714 color:windowtext;text-decoration:none;text-underline:none'><span 3449 3715 style='mso-list:Ignore'>d.<span style='font:7.0pt "Times New Roman"'> 3450 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3451 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Copy<span 3716 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 3717 style='mso-fareast-font-family:"Times New Roman"'><a href="#Peak_List"><span 3718 style='color:windowtext;text-decoration:none;text-underline:none'><span 3719 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Copy<span 3452 3720 style='font-weight:normal'> – this copies the instrument parameters shown 3453 3721 to other selected powder patterns. If used, a dialog box (Copy parameters) will … … 3462 3730 style='font-family:Symbol;font-weight:normal'>a</span></sub><sub><span 3463 3731 style='font-weight:normal'>2</span></sub><span style='font-weight:normal'> 3464 ones.</span></span></span>< span style='color:windowtext;font-weight:normal;3465 text-decoration:none;text-underline:none'><o:p></o:p></span></a></span></b></p> 3466 3467 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3468 auto;text-indent:-.25in;mso-list:l18 level2 lfo12;tab-stops:list 1.0in'><b 3469 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 3470 href="#Peak_List"><![if !supportLists]><span style='color:windowtext;3471 font-weight:normal;text-decoration:none;text-underline:none'><span3732 ones.</span></span></span></a></span></b><span class=MsoHyperlink><span 3733 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 3734 none;text-underline:none'><o:p></o:p></span></span></p> 3735 3736 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 3737 auto;text-indent:-.25in;mso-list:l20 level2 lfo12;tab-stops:list 1.0in'><![if !supportLists]><span 3738 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3739 color:windowtext;text-decoration:none;text-underline:none'><span 3472 3740 style='mso-list:Ignore'>e.<span style='font:7.0pt "Times New Roman"'> 3473 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3474 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Copy 3741 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 3742 style='mso-fareast-font-family:"Times New Roman"'><a href="#Peak_List"><span 3743 style='color:windowtext;text-decoration:none;text-underline:none'><span 3744 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>Copy 3475 3745 flags <span style='font-weight:normal'>- – this copies the instrument 3476 3746 parameter refinement flags shown to other selected powder patterns. If used, a … … 3485 3755 style='font-weight:normal'>/K</span><sub><span style='font-family:Symbol; 3486 3756 font-weight:normal'>a</span></sub><sub><span style='font-weight:normal'>2</span></sub><span 3487 style='font-weight:normal'> ones.</span></span></span><span style='color:windowtext; 3488 font-weight:normal;text-decoration:none;text-underline:none'><o:p></o:p></span></a></span></b></p> 3489 3490 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l9 level1 lfo11'><span 3491 style='mso-fareast-font-family:"Times New Roman"'><a href="#Peak_List"><![if !supportLists]><span 3492 style='color:windowtext;text-decoration:none;text-underline:none'><span 3757 style='font-weight:normal'> ones.</span></span></span></a></span></b><span 3758 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3759 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 3760 3761 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l10 level1 lfo11'><![if !supportLists]><span 3762 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3763 color:windowtext;text-decoration:none;text-underline:none'><span 3493 3764 style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'> 3494 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3495 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>You 3496 can change any of the profile coefficients</span><o:p></o:p></span></a></span></p> 3497 3498 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l9 level1 lfo11'><span 3499 style='mso-fareast-font-family:"Times New Roman"'><a href="#Peak_List"><![if !supportLists]><span 3500 style='color:windowtext;text-decoration:none;text-underline:none'><span 3765 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 3766 "Times New Roman"'><a href="#Peak_List"><span style='color:windowtext; 3767 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>You 3768 can change any of the profile coefficients</span></span></a><span 3769 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 3770 text-underline:none'><o:p></o:p></span></span></span></p> 3771 3772 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l10 level1 lfo11'><![if !supportLists]><span 3773 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3774 color:windowtext;text-decoration:none;text-underline:none'><span 3501 3775 style='mso-list:Ignore'>3.<span style='font:7.0pt "Times New Roman"'> 3502 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3503 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>You 3776 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 3777 "Times New Roman"'><a href="#Peak_List"><span style='color:windowtext; 3778 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'>You 3504 3779 can choose to refine any profile coefficients. <b style='mso-bidi-font-weight: 3505 3780 normal'>NB</b>: In certain circumstances some choices are ignored e.g. Zero is 3506 not refined during peak fitting. Also some choices may lead to unstable 3507 refinement, e.g. <span class=GramE>Lam</span> refinement and lattice parameter 3508 refinement. Examine the ‘<span style='mso-fareast-font-family:"Times New Roman"; 3509 mso-fareast-theme-font:minor-fareast'><spanstyle='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><u><span3781 not refined during peak fitting. Also some choices may lead to unstable refinement, 3782 e.g. Lam refinement and lattice parameter refinement. Examine the ‘<span 3783 style='mso-fareast-font-family:"Times New Roman";mso-fareast-theme-font:minor-fareast'><span 3784 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><u><span 3510 3785 style='mso-fareast-font-family:"Times New Roman";color:blue'>Covariance’</span></u></span></span> 3511 display for highly correlated parameters.</span><o:p></o:p></span></a></span></p> 3786 display for highly correlated parameters.</span></span></a><span 3787 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 3788 text-underline:none'><o:p></o:p></span></span></span></p> 3512 3789 3513 3790 <h4><a name="Sample_Parameters"></a><u><span style='mso-fareast-font-family: 3514 3791 "Times New Roman"'><a href="#Peak_List"><span style='color:#4F81BD;mso-themecolor: 3515 3792 accent1'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'>Sample 3516 Parameters</span><o:p></o:p></span></a></span></u></h4> 3793 Parameters</span></span></a><span class=MsoHyperlink><span style='color:#4F81BD; 3794 mso-themecolor:accent1'><o:p></o:p></span></span></span></u></h4> 3517 3795 3518 3796 <p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><a … … 3521 3799 window show the various sample dependent parameters for this powder pattern. 3522 3800 The presence of a refine button indicates which can be refined while others are 3523 fixed. All values can be changed in this window. NB: for powder data <span 3524 class=GramE>be</span> sure the correct instrument type is selected (<b 3525 style='mso-bidi-font-weight:normal'>Debye-Scherrer</b> or <b style='mso-bidi-font-weight: 3526 normal'>Bragg-Brentano</b>).</span><o:p></o:p></span></a></span></p> 3801 fixed. All values can be changed in this window. NB: for powder data be sure 3802 the correct instrument type is selected (<b style='mso-bidi-font-weight:normal'>Debye-Scherrer</b> 3803 or <b style='mso-bidi-font-weight:normal'>Bragg-Brentano</b>).</span></span></a><span 3804 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 3805 text-underline:none'><o:p></o:p></span></span></span></p> 3527 3806 3528 3807 <h5><a name="Powder_Peaks"></a><a href="#Covariance"><span style='mso-bookmark: 3529 3808 Powder_Peaks'><span style='color:#4F4FFF;text-decoration:none;text-underline: 3530 3809 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3531 style='mso-fareast-font-family:"Times New Roman"'>What can I do here?</span></span></span></span><span 3532 style='mso-bookmark:Powder_Peaks'><span style='mso-fareast-font-family:"Times New Roman"; 3810 style='mso-fareast-font-family:"Times New Roman"'>What can I do here?</span></span></span></span></a><span 3811 style='mso-bookmark:Powder_Peaks'><span class=MsoHyperlink><span 3812 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3813 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 3814 3815 <h5 style='margin-left:.5in;text-indent:-.25in;mso-list:l8 level1 lfo13'><span 3816 style='mso-bookmark:Powder_Peaks'><![if !supportLists]><span 3817 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3533 3818 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 3534 none;text-underline:none'><o:p></o:p></span></span></a></h5> 3535 3536 <h5 style='margin-left:.5in;text-indent:-.25in;mso-list:l7 level1 lfo13'><span 3537 style='mso-bookmark:Powder_Peaks'></span><a href="#Covariance"><span 3538 style='mso-bookmark:Powder_Peaks'><![if !supportLists]><span style='mso-fareast-font-family: 3539 "Times New Roman";color:windowtext;font-weight:normal;mso-bidi-font-weight: 3540 bold;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>1.<span 3541 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 3819 none;text-underline:none'><span style='mso-list:Ignore'>1.<span 3820 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 3821 href="#Covariance"><span style='mso-bookmark:Powder_Peaks'><span 3542 3822 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 3543 3823 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span … … 3546 3826 "Times New Roman";color:windowtext'>File’</span><span style='mso-fareast-font-family: 3547 3827 "Times New Roman";color:windowtext;font-weight:normal;mso-bidi-font-weight: 3548 bold'> – </span></span></span></span><span style='mso-bookmark:Powder_Peaks'><span 3549 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3550 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></h5> 3551 3552 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l7 level2 lfo13; 3553 tab-stops:list 1.0in'><span style='mso-bookmark:Powder_Peaks'></span><a 3554 href="#Covariance"><span style='mso-bookmark:Powder_Peaks'><![if !supportLists]><span 3555 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3556 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 3557 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 3558 </span></span></span><![endif]><span style='color:#4F4FFF;text-decoration:none; 3559 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3828 bold'> – </span></span></span></span></a><span style='mso-bookmark:Powder_Peaks'><span 3829 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3830 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 3831 none;text-underline:none'><o:p></o:p></span></span></span></h5> 3832 3833 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l8 level2 lfo13; 3834 tab-stops:list 1.0in'><span style='mso-bookmark:Powder_Peaks'><![if !supportLists]><span 3835 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3836 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 3837 none;text-underline:none'><span style='mso-list:Ignore'>a.<span 3838 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 3839 href="#Covariance"><span style='mso-bookmark:Powder_Peaks'><span 3840 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 3841 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3560 3842 style='mso-fareast-font-family:"Times New Roman";color:windowtext'>Load</span><span 3561 3843 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3562 3844 normal;mso-bidi-font-weight:bold'> – this loads sample parameters from a 3563 previously saved .<span class=SpellE>samprm</span> file.</span></span></span></span><span 3564 style='mso-bookmark:Powder_Peaks'><span style='mso-fareast-font-family:"Times New Roman"; 3845 previously saved .samprm file.</span></span></span></span></a><span 3846 style='mso-bookmark:Powder_Peaks'><span class=MsoHyperlink><span 3847 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3848 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 3849 3850 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l8 level2 lfo13; 3851 tab-stops:list 1.0in'><span style='mso-bookmark:Powder_Peaks'><![if !supportLists]><span 3852 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3565 3853 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 3566 none;text-underline:none'><o:p></o:p></span></span></a></h5> 3567 3568 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l7 level2 lfo13; 3569 tab-stops:list 1.0in'><span style='mso-bookmark:Powder_Peaks'></span><a 3570 href="#Covariance"><span style='mso-bookmark:Powder_Peaks'><![if !supportLists]><span 3571 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3572 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 3573 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> 3574 </span></span></span><![endif]><span style='color:#4F4FFF;text-decoration:none; 3575 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3854 none;text-underline:none'><span style='mso-list:Ignore'>b.<span 3855 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 3856 href="#Covariance"><span style='mso-bookmark:Powder_Peaks'><span 3857 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 3858 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3576 3859 style='mso-fareast-font-family:"Times New Roman";color:windowtext'>Save</span><span 3577 3860 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3578 3861 normal;mso-bidi-font-weight:bold'> – this saves the sample parameters to 3579 a file with the extension ’. <span class=SpellE>samprm</span>’. A3580 file dialog box will appear to ask for the file name.</span></span></span></span><span3581 style='mso-bookmark:Powder_Peaks'><span style='mso-fareast-font-family:"Times New Roman";3582 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration:3583 no ne;text-underline:none'><o:p></o:p></span></span></a></h5>3862 a file with the extension ’.samprm’. A file dialog box will appear 3863 to ask for the file name.</span></span></span></span></a><span 3864 style='mso-bookmark:Powder_Peaks'><span class=MsoHyperlink><span 3865 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3866 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 3584 3867 3585 3868 <p class=MsoListParagraphCxSpFirst style='margin-left:1.0in;mso-add-space:auto; 3586 text-indent:-.25in;mso-list:l 7level2 lfo13;tab-stops:list 1.0in'><span3587 style='mso-bookmark:Powder_Peaks'>< /span><a href="#Covariance"><span3588 style='mso-bookmark:Powder_Peaks'><![if !supportLists]><span style='mso-fareast-font-family: 3589 "Times New Roman";color:windowtext;text-decoration:none;text-underline:none'><span3869 text-indent:-.25in;mso-list:l8 level2 lfo13;tab-stops:list 1.0in'><span 3870 style='mso-bookmark:Powder_Peaks'><![if !supportLists]><span 3871 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3872 color:windowtext;text-decoration:none;text-underline:none'><span 3590 3873 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> 3591 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3874 </span></span></span></span><![endif]></span><a href="#Covariance"><span 3875 style='mso-bookmark:Powder_Peaks'><span style='color:windowtext;text-decoration: 3592 3876 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><b 3593 3877 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Copy</span></b><span … … 3597 3881 patterns, you can copy the sample parameters to any or all of them; select 3598 3882 ‘All’ to copy them to all patterns. Then select ‘OK’ to 3599 do the copy; ‘Cancel’ to cancel the operation. </span></span></span></span><span 3600 style='mso-bookmark:Powder_Peaks'><span style='mso-fareast-font-family:"Times New Roman"; 3601 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p> 3883 do the copy; ‘Cancel’ to cancel the operation. </span></span></span></span></a><span 3884 style='mso-bookmark:Powder_Peaks'><span class=MsoHyperlink><span 3885 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 3886 none;text-underline:none'><o:p></o:p></span></span></span></p> 3602 3887 3603 3888 <p class=MsoListParagraphCxSpLast style='margin-left:1.0in;mso-add-space:auto; 3604 text-indent:-.25in;mso-list:l 7level2 lfo13;tab-stops:list 1.0in'><span3605 style='mso-bookmark:Powder_Peaks'>< /span><a href="#Covariance"><span3606 style='mso-bookmark:Powder_Peaks'><![if !supportLists]><span style='mso-fareast-font-family: 3607 "Times New Roman";color:windowtext;text-decoration:none;text-underline:none'><span3889 text-indent:-.25in;mso-list:l8 level2 lfo13;tab-stops:list 1.0in'><span 3890 style='mso-bookmark:Powder_Peaks'><![if !supportLists]><span 3891 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3892 color:windowtext;text-decoration:none;text-underline:none'><span 3608 3893 style='mso-list:Ignore'>d.<span style='font:7.0pt "Times New Roman"'> 3609 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3894 </span></span></span></span><![endif]></span><a href="#Covariance"><span 3895 style='mso-bookmark:Powder_Peaks'><span style='color:windowtext;text-decoration: 3610 3896 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><b 3611 3897 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Copy … … 3616 3902 parameter refinement flags to any or all of them; select ‘All’ to 3617 3903 copy them to all patterns. Then select ‘OK’ to do the copy; 3618 ‘Cancel’ to cancel the operation. </span></span></span></span><span 3619 style='mso-bookmark:Powder_Peaks'><span style='mso-fareast-font-family:"Times New Roman"; 3620 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p> 3904 ‘Cancel’ to cancel the operation. </span></span></span></span></a><span 3905 style='mso-bookmark:Powder_Peaks'><span class=MsoHyperlink><span 3906 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 3907 none;text-underline:none'><o:p></o:p></span></span></span></p> 3621 3908 3622 3909 <h4><span style='mso-bookmark:Powder_Peaks'><a name="_Ref350849079"></a><a 3623 name="Peak_List"></a></span><a href="#Covariance"><span style='mso-bookmark: 3624 Powder_Peaks'><span style='mso-bookmark:_Ref350849079'><span style='color:#4F81BD; 3625 mso-themecolor:accent1;text-decoration:none;text-underline:none'><span 3626 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3627 style='mso-fareast-font-family:"Times New Roman"'>Peak List</span></span></span></span></span><span 3628 style='mso-fareast-font-family:"Times New Roman";color:#4F81BD;mso-themecolor: 3629 accent1;text-decoration:none;text-underline:none'><o:p></o:p></span></a></h4> 3910 name="Peak_List"></a><span style='mso-bookmark:_Ref350849079'></span></span><a 3911 href="#Covariance"><span style='mso-bookmark:Powder_Peaks'><span 3912 style='mso-bookmark:_Ref350849079'><span style='color:#4F81BD;mso-themecolor: 3913 accent1;text-decoration:none;text-underline:none'><span style='mso-field-code: 3914 " HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span style='mso-fareast-font-family: 3915 "Times New Roman"'>Peak List</span></span></span></span></span></a><span 3916 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3917 color:#4F81BD;mso-themecolor:accent1;text-decoration:none;text-underline:none'><o:p></o:p></span></span></h4> 3630 3918 3631 3919 <p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><a 3632 3920 href="#Covariance"><span style='color:windowtext;text-decoration:none; 3633 3921 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'>This 3634 window shows the list of peaks that will be used by the peak fitting 3635 refinement. It is filled by picking peaks in the powder pattern displayed in 3636 the GSASII Plots window as a sequence of ‘+’ marks.</span><o:p></o:p></span></a></span></p> 3922 window shows the list of peaks that will be used by the peak fitting refinement. 3923 It is filled by picking peaks in the powder pattern displayed in the GSASII 3924 Plots window as a sequence of ‘+’ marks.</span></span></a><span 3925 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 3926 text-underline:none'><o:p></o:p></span></span></span></p> 3637 3927 3638 3928 <h5><a name="Index_Peaks"></a><a href="#Covariance"><span style='mso-bookmark: 3639 3929 Index_Peaks'><span style='color:#4F4FFF;text-decoration:none;text-underline: 3640 3930 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3641 style='mso-fareast-font-family:"Times New Roman"'>What can I do here? </span></span></span></span>< span3642 style='mso-bookmark:Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman";3643 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration:3644 no ne;text-underline:none'><o:p></o:p></span></span></a></h5>3645 3646 <h5 style='margin-left:45.0pt;text-indent:-.25in;mso-list:l1 0level1 lfo14'><span3647 style='mso-bookmark:Index_Peaks'>< /span><a href="#Covariance"><span3648 style='mso- bookmark:Index_Peaks'><![if !supportLists]><span style='mso-fareast-font-family:3649 "Times New Roman";color:windowtext;font-weight:normal;mso-bidi-font-weight: 3650 bold;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>1.<span 3651 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span3652 style=' color:#4F4FFF;text-decoration:none;text-underline:none'><span3653 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span3931 style='mso-fareast-font-family:"Times New Roman"'>What can I do here? </span></span></span></span></a><span 3932 style='mso-bookmark:Index_Peaks'><span class=MsoHyperlink><span 3933 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3934 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 3935 3936 <h5 style='margin-left:45.0pt;text-indent:-.25in;mso-list:l11 level1 lfo14'><span 3937 style='mso-bookmark:Index_Peaks'><![if !supportLists]><span class=MsoHyperlink><span 3938 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3939 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 3940 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> 3941 </span></span></span></span><![endif]></span><a href="#Covariance"><span 3942 style='mso-bookmark:Index_Peaks'><span style='color:#4F4FFF;text-decoration: 3943 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3654 3944 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3655 3945 normal;mso-bidi-font-weight:bold'>Menu ‘</span><span style='mso-fareast-font-family: 3656 3946 "Times New Roman";color:windowtext'>Peak Fitting</span><span style='mso-fareast-font-family: 3657 3947 "Times New Roman";color:windowtext;font-weight:normal;mso-bidi-font-weight: 3658 bold'>’ – </span></span></span></span><span style='mso-bookmark: 3659 Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman";color:windowtext; 3660 font-weight:normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline: 3661 none'><o:p></o:p></span></span></a></h5> 3662 3663 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l10 level2 lfo14; 3664 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'></span><a 3665 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 3666 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3667 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 3668 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 3669 </span></span></span><![endif]><span style='color:#4F4FFF;text-decoration:none; 3670 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3948 bold'>’ – </span></span></span></span></a><span style='mso-bookmark: 3949 Index_Peaks'><span class=MsoHyperlink><span style='mso-fareast-font-family: 3950 "Times New Roman";color:windowtext;font-weight:normal;mso-bidi-font-weight: 3951 bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 3952 3953 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l11 level2 lfo14; 3954 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 3955 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3956 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 3957 none;text-underline:none'><span style='mso-list:Ignore'>a.<span 3958 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 3959 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><span 3960 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 3961 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3671 3962 style='mso-fareast-font-family:"Times New Roman";color:windowtext'>Auto search</span><span 3672 3963 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: … … 3674 3965 positions. These are selected based on peak tops that are substantially above 3675 3966 background. Noisy data will give spurious peaks and small peaks or shoulders 3676 will not be found. Examine results & modify as needed.</span></span></span></span><span 3677 style='mso-bookmark:Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman"; 3967 will not be found. Examine results & modify as needed.</span></span></span></span></a><span 3968 style='mso-bookmark:Index_Peaks'><span class=MsoHyperlink><span 3969 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3970 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 3971 3972 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l11 level2 lfo14; 3973 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 3974 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3678 3975 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 3679 none;text-underline:none'><o:p></o:p></span></span></a></h5> 3680 3681 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l10 level2 lfo14; 3682 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'></span><a 3683 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 3684 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3685 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 3686 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> 3687 </span></span></span><![endif]><span style='color:#4F4FFF;text-decoration:none; 3688 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3689 class=SpellE><span style='mso-fareast-font-family:"Times New Roman";color:windowtext'>UnDo</span></span><span 3976 none;text-underline:none'><span style='mso-list:Ignore'>b.<span 3977 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 3978 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><span 3979 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 3980 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3981 style='mso-fareast-font-family:"Times New Roman";color:windowtext'>UnDo</span><span 3690 3982 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3691 3983 normal;mso-bidi-font-weight:bold'> – resets peak parameters, background … … 3693 3985 to their original values. Use this to recover from a failed refinement. 3694 3986 Note:<span style='mso-spacerun:yes'> </span>there is only a single level 3695 of recovery available.</span></span></span></span><span style='mso-bookmark: 3696 Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman";color:windowtext; 3697 font-weight:normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline: 3698 none'><o:p></o:p></span></span></a></h5> 3699 3700 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l10 level2 lfo14; 3701 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'></span><a 3702 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 3987 of recovery available.</span></span></span></span></a><span style='mso-bookmark: 3988 Index_Peaks'><span class=MsoHyperlink><span style='mso-fareast-font-family: 3989 "Times New Roman";color:windowtext;font-weight:normal;mso-bidi-font-weight: 3990 bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 3991 3992 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l11 level2 lfo14; 3993 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 3994 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3995 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 3996 none;text-underline:none'><span style='mso-list:Ignore'>c.<span 3997 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 3998 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><span 3999 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 4000 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 4001 style='mso-fareast-font-family:"Times New Roman";color:windowtext'>LSQ PeakFit</span><span 3703 4002 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3704 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 3705 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> 3706 </span></span></span><![endif]><span style='color:#4F4FFF;text-decoration:none; 3707 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3708 style='mso-fareast-font-family:"Times New Roman";color:windowtext'>LSQ <span 3709 class=SpellE>PeakFit</span></span><span style='mso-fareast-font-family:"Times New Roman"; 3710 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold'> – perform 3711 a least squares fit of the peaks in <span class=SpellE>PeakList</span> to the 3712 data. Any peak parameters, background parameters and instrument parameters with 3713 refine checked will be varied in this refinement. The refinement will proceed 3714 until convergence. We suggest you vary the intensity along with the background 3715 first (the default), then vary the position and instrument parameters after. 3716 The order will depend on how poor is the initial estimate of the instrument 3717 parameters (U, V, W, X, Y & SH/L). To determine how to proceed, examine in 3718 detail the powder pattern difference curve displayed in the GSASII Plots 3719 window. If individual peaks show peak widths that are widely different, their 3720 individual sigma and gamma parameters may be refined. If the refinement results 3721 in negative peak coefficients, these will be highlighted in red. If this 3722 happens, you should </span><span class=SpellE><span style='mso-fareast-font-family: 3723 "Times New Roman";color:windowtext'>UnDo</span></span><span style='mso-fareast-font-family: 4003 normal;mso-bidi-font-weight:bold'> – perform a least squares fit of the 4004 peaks in Peak List to the data. Any peak parameters, background parameters and 4005 instrument parameters with refine checked will be varied in this refinement. 4006 The refinement will proceed until convergence. We suggest you vary the 4007 intensity along with the background first (the default), then vary the position 4008 and instrument parameters after. The order will depend on how poor is the 4009 initial estimate of the instrument parameters (U, V, W, X, Y & SH/L). To 4010 determine how to proceed, examine in detail the powder pattern difference curve 4011 displayed in the GSASII Plots window. If individual peaks show peak widths that 4012 are widely different, their individual sigma and gamma parameters may be 4013 refined. If the refinement results in negative peak coefficients, these will be 4014 highlighted in red. If this happens, you should </span><span style='mso-fareast-font-family: 4015 "Times New Roman";color:windowtext'>UnDo</span><span style='mso-fareast-font-family: 3724 4016 "Times New Roman";color:windowtext;font-weight:normal;mso-bidi-font-weight: 3725 bold'> the refinement and reconsider your choice of parameters to be varied.</span></span></span></span><span 3726 style='mso-bookmark:Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman"; 4017 bold'> the refinement and reconsider your choice of parameters to be varied.</span></span></span></span></a><span 4018 style='mso-bookmark:Index_Peaks'><span class=MsoHyperlink><span 4019 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4020 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 4021 4022 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l11 level2 lfo14; 4023 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 4024 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3727 4025 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 3728 none;text-underline:none'><o:p></o:p></span></span></a></h5> 3729 3730 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l10 level2 lfo14; 3731 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'></span><a 3732 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 3733 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3734 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 3735 style='mso-list:Ignore'>d.<span style='font:7.0pt "Times New Roman"'> 3736 </span></span></span><![endif]><span style='color:#4F4FFF;text-decoration:none; 3737 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 4026 none;text-underline:none'><span style='mso-list:Ignore'>d.<span 4027 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 4028 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><span 4029 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 4030 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3738 4031 style='mso-fareast-font-family:"Times New Roman";color:windowtext'>LSQ one 3739 4032 cycle </span><span style='mso-fareast-font-family:"Times New Roman";color:windowtext; 3740 4033 font-weight:normal;mso-bidi-font-weight:bold'>– perform a single cycle of 3741 4034 least squares refinement. This can be used in difficult cases to get a 3742 refinement started toward convergence.</span></span></span></span><span 3743 style='mso-bookmark:Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman"; 4035 refinement started toward convergence.</span></span></span></span></a><span 4036 style='mso-bookmark:Index_Peaks'><span class=MsoHyperlink><span 4037 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4038 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 4039 4040 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l11 level2 lfo14; 4041 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 4042 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3744 4043 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 3745 none;text-underline:none'><o:p></o:p></span></span></a></h5> 3746 3747 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l10 level2 lfo14; 3748 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'></span><a 3749 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 3750 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3751 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 3752 style='mso-list:Ignore'>e.<span style='font:7.0pt "Times New Roman"'> 3753 </span></span></span><![endif]><span style='color:#4F4FFF;text-decoration:none; 3754 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 4044 none;text-underline:none'><span style='mso-list:Ignore'>e.<span 4045 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 4046 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><span 4047 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 4048 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3755 4049 style='mso-fareast-font-family:"Times New Roman";color:windowtext'>Reset sig 3756 4050 and gam </span><span style='mso-fareast-font-family:"Times New Roman"; 3757 4051 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold'>– this 3758 4052 resets the values of sigma and gamma to those computed from the instrument 3759 parameters U, V, W, <span class=GramE>X</span> & Y.</span></span></span></span><span 3760 style='mso-bookmark:Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman"; 4053 parameters U, V, W, X & Y.</span></span></span></span></a><span 4054 style='mso-bookmark:Index_Peaks'><span class=MsoHyperlink><span 4055 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4056 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 4057 4058 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l11 level2 lfo14; 4059 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 4060 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 3761 4061 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 3762 none;text-underline:none'><o:p></o:p></span></span></a></h5> 3763 3764 <h5 style='margin-left:1.0in;text-indent:-.25in;mso-list:l10 level2 lfo14; 3765 tab-stops:list 1.0in'><span style='mso-bookmark:Index_Peaks'></span><a 3766 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 3767 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3768 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 3769 style='mso-list:Ignore'>f.<span style='font:7.0pt "Times New Roman"'> 3770 </span></span></span><![endif]><span style='color:#4F4FFF;text-decoration:none; 3771 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 4062 none;text-underline:none'><span style='mso-list:Ignore'>f.<span 4063 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 4064 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><span 4065 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 4066 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3772 4067 style='mso-fareast-font-family:"Times New Roman";color:windowtext'>Clear peaks </span><span 3773 4068 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3774 4069 normal;mso-bidi-font-weight:bold'>– this removes all the peaks from the 3775 Peak List.</span></span></span></span><span style='mso-bookmark:Index_Peaks'><span 4070 Peak List.</span></span></span></span></a><span style='mso-bookmark:Index_Peaks'><span 4071 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4072 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 4073 none;text-underline:none'><o:p></o:p></span></span></span></h5> 4074 4075 <h5 style='margin-left:45.0pt;text-indent:-.25in;mso-list:l11 level1 lfo14'><span 4076 style='mso-bookmark:Index_Peaks'><![if !supportLists]><span class=MsoHyperlink><span 3776 4077 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3777 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></h5> 3778 3779 <h5 style='margin-left:45.0pt;text-indent:-.25in;mso-list:l10 level1 lfo14'><span 3780 style='mso-bookmark:Index_Peaks'></span><a href="#Covariance"><span 3781 style='mso-bookmark:Index_Peaks'><![if !supportLists]><span style='mso-fareast-font-family: 3782 "Times New Roman";color:windowtext;font-weight:normal;mso-bidi-font-weight: 3783 bold;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>2.<span 3784 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 3785 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 3786 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 4078 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 4079 style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'> 4080 </span></span></span></span><![endif]></span><a href="#Covariance"><span 4081 style='mso-bookmark:Index_Peaks'><span style='color:#4F4FFF;text-decoration: 4082 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3787 4083 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3788 4084 normal;mso-bidi-font-weight:bold'>You can add peaks to the Peak list using the … … 3792 4088 that position. Be sure that the Zoom/Pan buttons are not selected on the Plot 3793 4089 window. We recommend that you begin picking peaks from the right side of the 3794 pattern; that way the tool tip won’t be in your way as you select peaks.</span></span></span></span>< span3795 style='mso-bookmark:Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman";3796 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration:3797 no ne;text-underline:none'><o:p></o:p></span></span></a></h5>3798 3799 <h5 style='margin-left:45.0pt;text-indent:-.25in;mso-list:l1 0level1 lfo14'><span3800 style='mso-bookmark:Index_Peaks'>< /span><a href="#Covariance"><span3801 style='mso- bookmark:Index_Peaks'><![if !supportLists]><span style='mso-fareast-font-family:3802 "Times New Roman";color:windowtext;font-weight:normal;mso-bidi-font-weight: 3803 bold;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>3.<span 3804 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span3805 style=' color:#4F4FFF;text-decoration:none;text-underline:none'><span3806 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span4090 pattern; that way the tool tip won’t be in your way as you select peaks.</span></span></span></span></a><span 4091 style='mso-bookmark:Index_Peaks'><span class=MsoHyperlink><span 4092 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4093 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 4094 4095 <h5 style='margin-left:45.0pt;text-indent:-.25in;mso-list:l11 level1 lfo14'><span 4096 style='mso-bookmark:Index_Peaks'><![if !supportLists]><span class=MsoHyperlink><span 4097 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4098 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 4099 style='mso-list:Ignore'>3.<span style='font:7.0pt "Times New Roman"'> 4100 </span></span></span></span><![endif]></span><a href="#Covariance"><span 4101 style='mso-bookmark:Index_Peaks'><span style='color:#4F4FFF;text-decoration: 4102 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3807 4103 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3808 4104 normal;mso-bidi-font-weight:bold'>You can move a Peak List item using the mouse … … 3810 4106 to move, 2) holding the left mouse button down, drag to the desired position 3811 4107 & then release the button. The peak line will be drawn in the new position. 3812 Be sure that the Zoom/Pan buttons are not selected on the Plot window.</span></span></span></span>< span3813 style='mso-bookmark:Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman";3814 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration:3815 no ne;text-underline:none'><o:p></o:p></span></span></a></h5>4108 Be sure that the Zoom/Pan buttons are not selected on the Plot window.</span></span></span></span></a><span 4109 style='mso-bookmark:Index_Peaks'><span class=MsoHyperlink><span 4110 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4111 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 3816 4112 3817 4113 <p class=MsoListParagraphCxSpFirst style='margin-left:45.0pt;mso-add-space: 3818 auto;text-indent:-.25in;mso-list:l1 0level1 lfo14'><span style='mso-bookmark:3819 Index_Peaks'>< /span><a href="#Covariance"><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span4114 auto;text-indent:-.25in;mso-list:l11 level1 lfo14'><span style='mso-bookmark: 4115 Index_Peaks'><![if !supportLists]><span class=MsoHyperlink><span 3820 4116 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 3821 4117 none;text-underline:none'><span style='mso-list:Ignore'>4.<span 3822 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4118 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 4119 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><span 3823 4120 style='color:windowtext;text-decoration:none;text-underline:none'><span 3824 4121 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3825 style='mso-fareast-font-family:"Times New Roman"'>You can change individual 3826 peak coefficient values. Enter the value then press Enter or Tab or click the 3827 mouse elsewhere in the Peak List window. This will set the new value.</span></span></span></span><span 3828 style='mso-bookmark:Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman"; 3829 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p> 4122 style='mso-fareast-font-family:"Times New Roman"'>You can change individual peak 4123 coefficient values. Enter the value then press Enter or Tab or click the mouse 4124 elsewhere in the Peak List window. This will set the new value.</span></span></span></span></a><span 4125 style='mso-bookmark:Index_Peaks'><span class=MsoHyperlink><span 4126 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4127 none;text-underline:none'><o:p></o:p></span></span></span></p> 3830 4128 3831 4129 <p class=MsoListParagraphCxSpLast style='margin-left:45.0pt;mso-add-space:auto; 3832 text-indent:-.25in;mso-list:l1 0 level1 lfo14'><span style='mso-bookmark:Index_Peaks'></span><a3833 href="#Covariance"><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 3834 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 3835 none;text-underline:none'><span style='mso-list:Ignore'>5.<span 3836 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span3837 style=' color:windowtext;text-decoration:none;text-underline:none'><span3838 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'>You4130 text-indent:-.25in;mso-list:l11 level1 lfo14'><span style='mso-bookmark:Index_Peaks'><![if !supportLists]><span 4131 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4132 color:windowtext;text-decoration:none;text-underline:none'><span 4133 style='mso-list:Ignore'>5.<span style='font:7.0pt "Times New Roman"'> 4134 </span></span></span></span><![endif]></span><a href="#Covariance"><span 4135 style='mso-bookmark:Index_Peaks'><span style='color:windowtext;text-decoration: 4136 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'>You 3839 4137 can change the refine flags either by clicking on the box or by selecting one 3840 4138 and then selecting the column (a single click on the column heading; column 3841 4139 should show in blue). Then type ‘y’ to set the refine flags or 3842 ‘n’ to clear the flags. </span></span></span><span 3843 style='mso-bookmark:Index_Peaks'><span style='mso-fareast-font-family:"Times New Roman"; 3844 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p> 3845 3846 <h5 style='margin-left:45.0pt;text-indent:-.25in;mso-list:l10 level1 lfo14'><span 3847 style='mso-bookmark:Index_Peaks'></span><a href="#Covariance"><span 3848 style='mso-bookmark:Index_Peaks'><![if !supportLists]><span style='mso-fareast-font-family: 3849 "Times New Roman";color:windowtext;font-weight:normal;mso-bidi-font-weight: 3850 bold;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>6.<span 3851 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 3852 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 3853 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 4140 ‘n’ to clear the flags. </span></span></span></a><span 4141 style='mso-bookmark:Index_Peaks'><span class=MsoHyperlink><span 4142 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4143 none;text-underline:none'><o:p></o:p></span></span></span></p> 4144 4145 <h5 style='margin-left:45.0pt;text-indent:-.25in;mso-list:l11 level1 lfo14'><span 4146 style='mso-bookmark:Index_Peaks'><![if !supportLists]><span class=MsoHyperlink><span 4147 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4148 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><span 4149 style='mso-list:Ignore'>6.<span style='font:7.0pt "Times New Roman"'> 4150 </span></span></span></span><![endif]></span><a href="#Covariance"><span 4151 style='mso-bookmark:Index_Peaks'><span style='color:#4F4FFF;text-decoration: 4152 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3854 4153 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3855 4154 normal;mso-bidi-font-weight:bold'>You can delete peaks in the Peak List by … … 3859 4158 button. The blue line should vanish and the corresponding peak will be removed 3860 4159 from the Peak List. Be sure that the Zoom/Pan buttons are not selected on the 3861 Plot window.</span></span></span></span><span style='mso-bookmark:Index_Peaks'><span 3862 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 3863 normal;mso-bidi-font-weight:bold;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></h5> 4160 Plot window.</span></span></span></span></a><span style='mso-bookmark:Index_Peaks'><span 4161 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4162 color:windowtext;font-weight:normal;mso-bidi-font-weight:bold;text-decoration: 4163 none;text-underline:none'><o:p></o:p></span></span></span></h5> 3864 4164 3865 4165 <h4><span style='mso-bookmark:Index_Peaks'><a name="Index_Peak_List"></a></span><a … … 3867 4167 style='color:#4F81BD;mso-themecolor:accent1;text-decoration:none;text-underline: 3868 4168 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Covariance\0022 "'><span 3869 style='mso-fareast-font-family:"Times New Roman"'>Index Peak List</span></span></span></span>< span3870 style='mso-fareast-font-family:"Times New Roman";color:#4F81BD;mso-themecolor: 3871 accent1;text-decoration:none;text-underline:none'><o:p></o:p></span></a></h4>4169 style='mso-fareast-font-family:"Times New Roman"'>Index Peak List</span></span></span></span></a><span 4170 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4171 color:#4F81BD;mso-themecolor:accent1;text-decoration:none;text-underline:none'><o:p></o:p></span></span></h4> 3872 4172 3873 4173 <p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><a … … 3879 4179 style='mso-fareast-font-family:"Times New Roman";color:blue'>Unit Cells List</span></u></span></span>). 3880 4180 It must be filled before indexing can proceed. When indexing is completed, this 3881 display will show the resulting <span class=SpellE>hkl</span> values for every 3882 indexed reflection along with the calculated d-spacing (‘d-<span 3883 class=SpellE>calc</span>’) for the selected unit cell in <span 3884 style='mso-fareast-font-family:"Times New Roman";mso-fareast-theme-font:minor-fareast'><span 3885 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Unit_Cells_List\0022 "'><u><span 3886 style='mso-fareast-font-family:"Times New Roman";color:blue'>Unit Cells List</span></u></span></span>.</span><o:p></o:p></span></a></span></p> 4181 display will show the resulting hkl values for every indexed reflection along 4182 with the calculated d-spacing (‘d-calc’) for the selected unit cell 4183 in <span style='mso-fareast-font-family:"Times New Roman";mso-fareast-theme-font: 4184 minor-fareast'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Unit_Cells_List\0022 "'><u><span 4185 style='mso-fareast-font-family:"Times New Roman";color:blue'>Unit Cells List</span></u></span></span>.</span></span></a><span 4186 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 4187 text-underline:none'><o:p></o:p></span></span></span></p> 3887 4188 3888 4189 <h5><span style='mso-fareast-font-family:"Times New Roman"'><a 3889 4190 href="#Covariance"><span style='color:#4F4FFF;text-decoration:none;text-underline: 3890 4191 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Unit_Cells_List\0022 "'>What 3891 can I do here?</span><o:p></o:p></span></a></span></h5> 3892 3893 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l25 level1 lfo15'><span 3894 style='mso-fareast-font-family:"Times New Roman"'><a href="#Unit_Cells_List"><![if !supportLists]><span 3895 style='color:windowtext;text-decoration:none;text-underline:none'><span 4192 can I do here?</span></span></a><span class=MsoHyperlink><span 4193 style='color:#4F4FFF;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 4194 4195 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l28 level1 lfo15'><![if !supportLists]><span 4196 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4197 color:windowtext;text-decoration:none;text-underline:none'><span 3896 4198 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> 3897 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3898 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Unit_Cells_List\0022 "'>Menu 4199 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 4200 "Times New Roman"'><a href="#Unit_Cells_List"><span style='color:windowtext; 4201 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Unit_Cells_List\0022 "'>Menu 3899 4202 ‘<b style='mso-bidi-font-weight:normal'>Operations</b>’ – <b 3900 4203 style='mso-bidi-font-weight:normal'>Load/Reload</b> – loads the peak … … 3902 4205 mso-fareast-theme-font:minor-fareast'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Peak_List\0022 "'><u><span 3903 4206 style='mso-fareast-font-family:"Times New Roman";color:blue'>Peak List</span></u></span></span> 3904 to make them available for the indexing routine. The d-<span class=SpellE>obs</span> 3905 is obtained from Bragg’s Law after applying the Zero correction shown on 3906 the <span style='mso-fareast-font-family:"Times New Roman";mso-fareast-theme-font: 3907 minor-fareast'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Instrument_Parameters\0022 "'><u><span 3908 style='mso-fareast-font-family:"Times New Roman";color:blue'>Instrument 3909 Parameters</span></u></span></span> table to the position shown here.</span><o:p></o:p></span></a></span></p> 3910 3911 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l25 level1 lfo15'><span 3912 style='mso-fareast-font-family:"Times New Roman"'><a href="#Unit_Cells_List"><![if !supportLists]><span 3913 style='color:windowtext;text-decoration:none;text-underline:none'><span 4207 to make them available for the indexing routine. The d-obs is obtained from 4208 Bragg’s Law after applying the Zero correction shown on the <span 4209 style='mso-fareast-font-family:"Times New Roman";mso-fareast-theme-font:minor-fareast'><span 4210 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Instrument_Parameters\0022 "'><u><span 4211 style='mso-fareast-font-family:"Times New Roman";color:blue'>Instrument Parameters</span></u></span></span> 4212 table to the position shown here.</span></span></a><span class=MsoHyperlink><span 4213 style='color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></p> 4214 4215 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l28 level1 lfo15'><![if !supportLists]><span 4216 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4217 color:windowtext;text-decoration:none;text-underline:none'><span 3914 4218 style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'> 3915 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 3916 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Instrument_Parameters\0022 "'>You 4219 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 4220 "Times New Roman"'><a href="#Unit_Cells_List"><span style='color:windowtext; 4221 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Instrument_Parameters\0022 "'>You 3917 4222 may deselect individual peaks from indexing by unchecking the corresponding 3918 ‘use’ box.</span><o:p></o:p></span></a></span></p> 4223 ‘use’ box.</span></span></a><span class=MsoHyperlink><span 4224 style='color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></p> 3919 4225 3920 4226 <h4><a name="Cell_Indexing_Refine"></a><a name="Unit_Cells_List"></a><span 3921 style='mso- fareast-font-family:"Times New Roman"'><a4227 style='mso-bookmark:Cell_Indexing_Refine'></span><a 3922 4228 href="#Instrument_Parameters"><span style='mso-bookmark:Cell_Indexing_Refine'><span 3923 style='color:#4F81BD;mso-themecolor:accent1;text-decoration:none;text-underline: 3924 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Instrument_Parameters\0022 "'>Unit 3925 Cells List</span></span></span><span style='color:#4F81BD;mso-themecolor:accent1; 3926 text-decoration:none;text-underline:none'><o:p></o:p></span></a></span></h4> 4229 style='mso-fareast-font-family:"Times New Roman";color:#4F81BD;mso-themecolor: 4230 accent1;text-decoration:none;text-underline:none'><span style='mso-field-code: 4231 " HYPERLINK \0022\0022 \\l \0022Instrument_Parameters\0022 "'>Unit Cells List</span></span></span></a><span 4232 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4233 color:#4F81BD;mso-themecolor:accent1;text-decoration:none;text-underline:none'><o:p></o:p></span></span></h4> 3927 4234 3928 4235 <p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><a 3929 4236 href="#Instrument_Parameters"><span style='color:windowtext;text-decoration: 3930 4237 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Instrument_Parameters\0022 "'>This 3931 window shows the controls and results from indexing of the peaks in <span3932 class=GramE>the </span><spanstyle='mso-field-code:" HYPERLINK \\l \0022Index_Peak_List\0022 "'><u><span4238 window shows the controls and results from indexing of the peaks in the <span 4239 style='mso-field-code:" HYPERLINK \\l \0022Index_Peak_List\0022 "'><u><span 3933 4240 style='color:blue'>Index_Peak_List</span></u></span><!--[if supportFields]><span 3934 4241 style='mso-element:field-begin'></span> REF Index_Peak_List \h <![endif]--><!--[if gte mso 9]><xml> … … 3959 4266 <w:data>08D0C9EA79F9BACE118C8200AA004BA90B02000000080000001000000049006E006400650078005F005000650061006B005F004C006900730074000000</w:data> 3960 4267 </xml><![endif]--><!--[if supportFields]><span style='mso-element:field-end'></span><![endif]-->. 3961 </span><o:p></o:p></span></a></span></p> 4268 </span></span></a><span class=MsoHyperlink><span style='color:windowtext; 4269 text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></p> 3962 4270 3963 4271 <h5><a name="Reflection_List"></a><a href="#Instrument_Parameters"><span 3964 4272 style='mso-bookmark:Reflection_List'><span style='color:#4F4FFF;text-decoration: 3965 4273 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><span 3966 style='mso-fareast-font-family:"Times New Roman"'>What can I do here?</span></span></span></span>< span3967 style='mso-bookmark:Reflection_List'><span style='mso-fareast-font-family:"Times New Roman";3968 color:#4F4FFF;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></h5> 3969 3970 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l15 level1 lfo16'><span 3971 style='mso-bookmark:Reflection_List'></span><a href="#Index_Peak_List"><span4274 style='mso-fareast-font-family:"Times New Roman"'>What can I do here?</span></span></span></span></a><span 4275 style='mso-bookmark:Reflection_List'><span class=MsoHyperlink><span 4276 style='mso-fareast-font-family:"Times New Roman";color:#4F4FFF;text-decoration: 4277 none;text-underline:none'><o:p></o:p></span></span></span></h5> 4278 4279 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l17 level1 lfo16'><span 3972 4280 style='mso-bookmark:Reflection_List'><![if !supportLists]><span 4281 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4282 color:windowtext;text-decoration:none;text-underline:none'><span 4283 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> 4284 </span></span></span></span><![endif]></span><a href="#Index_Peak_List"><span 4285 style='mso-bookmark:Reflection_List'><span style='color:windowtext;text-decoration: 4286 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b 4287 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Select 4288 Bravais Lattices</span></b><span style='mso-fareast-font-family:"Times New Roman"'> 4289 – the selected are tried for indexing the powder pattern. </span></span></span></span></a><span 4290 style='mso-bookmark:Reflection_List'><span class=MsoHyperlink><span 3973 4291 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 3974 none;text-underline:none'><span style='mso-list:Ignore'>1.<span 3975 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4292 none;text-underline:none'><o:p></o:p></span></span></span></p> 4293 4294 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l17 level1 lfo16'><span 4295 style='mso-bookmark:Reflection_List'><![if !supportLists]><span 4296 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4297 color:windowtext;text-decoration:none;text-underline:none'><span 4298 style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'> 4299 </span></span></span></span><![endif]></span><a href="#Index_Peak_List"><span 4300 style='mso-bookmark:Reflection_List'><span style='color:windowtext;text-decoration: 4301 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b 4302 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Max 4303 Nc/Nobs </span></b><span style='mso-fareast-font-family:"Times New Roman"'>– 4304 this controls the extent of the search for the correct indexing. This may need 4305 to be increased if an indexing trial terminates too quickly. It rarely needs to 4306 be changed.</span></span></span></span></a><span style='mso-bookmark:Reflection_List'><span 4307 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4308 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></p> 4309 4310 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l17 level1 lfo16'><span 4311 style='mso-bookmark:Reflection_List'><![if !supportLists]><span 4312 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4313 color:windowtext;text-decoration:none;text-underline:none'><span 4314 style='mso-list:Ignore'>3.<span style='font:7.0pt "Times New Roman"'> 4315 </span></span></span></span><![endif]></span><a href="#Index_Peak_List"><span 4316 style='mso-bookmark:Reflection_List'><span style='color:windowtext;text-decoration: 4317 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b 4318 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Start 4319 Volume </span></b><span style='mso-fareast-font-family:"Times New Roman"'>– 4320 this sets an initial unit cell volume for the indexing. It rarely needs to be 4321 changed.</span></span></span></span></a><span style='mso-bookmark:Reflection_List'><span 4322 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4323 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></p> 4324 4325 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l17 level1 lfo16'><span 4326 style='mso-bookmark:Reflection_List'><![if !supportLists]><span 4327 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4328 color:windowtext;text-decoration:none;text-underline:none'><span 4329 style='mso-list:Ignore'>4.<span style='font:7.0pt "Times New Roman"'> 4330 </span></span></span></span><![endif]></span><a href="#Index_Peak_List"><span 4331 style='mso-bookmark:Reflection_List'><span style='color:windowtext;text-decoration: 4332 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><span 4333 style='mso-fareast-font-family:"Times New Roman"'>Menu<b style='mso-bidi-font-weight: 4334 normal'> ‘Cell Index/Refine’ </b>– </span></span></span></span></a><span 4335 style='mso-bookmark:Reflection_List'><span class=MsoHyperlink><span 4336 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4337 none;text-underline:none'><o:p></o:p></span></span></span></p> 4338 4339 <p class=MsoListParagraphCxSpMiddle style='margin-left:.75in;mso-add-space: 4340 auto;text-indent:-.25in;mso-list:l17 level2 lfo16'><span style='mso-bookmark: 4341 Reflection_List'><![if !supportLists]><span class=MsoHyperlink><span 4342 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4343 none;text-underline:none'><span style='mso-list:Ignore'>a.<span 4344 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 4345 href="#Index_Peak_List"><span style='mso-bookmark:Reflection_List'><span 3976 4346 style='color:windowtext;text-decoration:none;text-underline:none'><span 3977 4347 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b 3978 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Select3979 <span class=SpellE>Bravais</span> Lattices</span></b><span style='mso-fareast-font-family:3980 "Times New Roman"'> – the selected are tried for indexing the powder3981 pattern. </span></span></span></span><span style='mso-bookmark:Reflection_List'><span3982 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration:3983 none;text-underline:none'><o:p></o:p></span></span></a></p>3984 3985 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l15 level1 lfo16'><span3986 style='mso-bookmark:Reflection_List'></span><a href="#Index_Peak_List"><span3987 style='mso-bookmark:Reflection_List'><![if !supportLists]><span3988 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration:3989 none;text-underline:none'><span style='mso-list:Ignore'>2.<span3990 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span3991 style='color:windowtext;text-decoration:none;text-underline:none'><span3992 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b3993 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Max3994 <span class=SpellE>Nc</span>/Nobs </span></b><span style='mso-fareast-font-family:3995 "Times New Roman"'>– this controls the extent of the search for the3996 correct indexing. This may need to be increased if an indexing trial terminates3997 too quickly. It rarely needs to be changed.</span></span></span></span><span3998 style='mso-bookmark:Reflection_List'><span style='mso-fareast-font-family:"Times New Roman";3999 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p>4000 4001 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l15 level1 lfo16'><span4002 style='mso-bookmark:Reflection_List'></span><a href="#Index_Peak_List"><span4003 style='mso-bookmark:Reflection_List'><![if !supportLists]><span4004 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration:4005 none;text-underline:none'><span style='mso-list:Ignore'>3.<span4006 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span4007 style='color:windowtext;text-decoration:none;text-underline:none'><span4008 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><span4009 class=GramE><b style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:4010 "Times New Roman"'>Start</span></b></span><b style='mso-bidi-font-weight:normal'><span4011 style='mso-fareast-font-family:"Times New Roman"'> Volume </span></b><span4012 style='mso-fareast-font-family:"Times New Roman"'>– this sets an initial4013 unit cell volume for the indexing. It rarely needs to be changed.</span></span></span></span><span4014 style='mso-bookmark:Reflection_List'><span style='mso-fareast-font-family:"Times New Roman";4015 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p>4016 4017 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l15 level1 lfo16'><span4018 style='mso-bookmark:Reflection_List'></span><a href="#Index_Peak_List"><span4019 style='mso-bookmark:Reflection_List'><![if !supportLists]><span4020 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration:4021 none;text-underline:none'><span style='mso-list:Ignore'>4.<span4022 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span4023 style='color:windowtext;text-decoration:none;text-underline:none'><span4024 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><span4025 style='mso-fareast-font-family:"Times New Roman"'>Menu<b style='mso-bidi-font-weight:4026 normal'> ‘Cell Index/Refine’ </b>– </span></span></span></span><span4027 style='mso-bookmark:Reflection_List'><span style='mso-fareast-font-family:"Times New Roman";4028 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p>4029 4030 <p class=MsoListParagraphCxSpMiddle style='margin-left:.75in;mso-add-space:4031 auto;text-indent:-.25in;mso-list:l15 level2 lfo16'><span style='mso-bookmark:4032 Reflection_List'></span><a href="#Index_Peak_List"><span style='mso-bookmark:4033 Reflection_List'><![if !supportLists]><span style='mso-fareast-font-family:4034 "Times New Roman";color:windowtext;text-decoration:none;text-underline:none'><span4035 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 4036 </span></span></span><![endif]><span style='color:windowtext;text-decoration:4037 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b4038 4348 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Index 4039 4349 Cell</span></b><span style='mso-fareast-font-family:"Times New Roman"'> – … … 4045 4355 style='mso-bidi-font-weight:normal'>M20</b> for each; good solutions are 4046 4356 indicated by high <b style='mso-bidi-font-weight:normal'>M20</b> values. <b 4047 style='mso-bidi-font-weight:normal'>X20</b> gives number of <span class=SpellE>unindexed</span>4048 lines out of the 1<sup>st</sup> 20 lines and <span class=SpellE><span 4049 class=GramE><b style='mso-bidi-font-weight:normal'>Nc</b></span></span> gives 4050 total number of reflections generated for each solution.</span></span></span></span><span4051 style='mso- bookmark:Reflection_List'><span style='mso-fareast-font-family:"Times New Roman";4052 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p>4357 style='mso-bidi-font-weight:normal'>X20</b> gives number of unindexed lines out 4358 of the 1<sup>st</sup> 20 lines and <b style='mso-bidi-font-weight:normal'>Nc</b> 4359 gives total number of reflections generated for each solution.</span></span></span></span></a><span 4360 style='mso-bookmark:Reflection_List'><span class=MsoHyperlink><span 4361 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4362 none;text-underline:none'><o:p></o:p></span></span></span></p> 4053 4363 4054 4364 <p class=MsoListParagraphCxSpMiddle style='margin-left:.75in;mso-add-space: 4055 auto;text-indent:-.25in;mso-list:l15 level2 lfo16'><span style='mso-bookmark: 4056 Reflection_List'></span><a href="#Index_Peak_List"><span style='mso-bookmark: 4057 Reflection_List'><![if !supportLists]><span style='mso-fareast-font-family: 4058 "Times New Roman";color:windowtext;text-decoration:none;text-underline:none'><span 4059 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> 4060 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4061 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b 4365 auto;text-indent:-.25in;mso-list:l17 level2 lfo16'><span style='mso-bookmark: 4366 Reflection_List'><![if !supportLists]><span class=MsoHyperlink><span 4367 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4368 none;text-underline:none'><span style='mso-list:Ignore'>b.<span 4369 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 4370 href="#Index_Peak_List"><span style='mso-bookmark:Reflection_List'><span 4371 style='color:windowtext;text-decoration:none;text-underline:none'><span 4372 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b 4062 4373 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Copy 4063 4374 Cell</span></b><span style='mso-fareast-font-family:"Times New Roman"'> – 4064 4375 this copies selected solution to the Unit cell values; attention is paid to the 4065 <span class=SpellE>Bravais</span> lattice shown for the choice and you may 4066 select a <b style='mso-bidi-font-weight:normal'>Space group</b> from the pull 4067 down box. Press <b style='mso-bidi-font-weight:normal'>Show <span class=SpellE>hkl</span> 4068 positions</b> to give the allowed peaks; to confirm the indexing compare these 4069 to peak positions and any unfitted peaks in the pattern.</span></span></span></span><span4070 style='mso- bookmark:Reflection_List'><span style='mso-fareast-font-family:"Times New Roman";4071 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p>4376 Bravais lattice shown for the choice and you may select a <b style='mso-bidi-font-weight: 4377 normal'>Space group</b> from the pull down box. Press <b style='mso-bidi-font-weight: 4378 normal'>Show hkl positions</b> to give the allowed peaks; to confirm the 4379 indexing compare these to peak positions and any unfitted peaks in the pattern.</span></span></span></span></a><span 4380 style='mso-bookmark:Reflection_List'><span class=MsoHyperlink><span 4381 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4382 none;text-underline:none'><o:p></o:p></span></span></span></p> 4072 4383 4073 4384 <p class=MsoListParagraphCxSpMiddle style='margin-left:.75in;mso-add-space: 4074 auto;text-indent:-.25in;mso-list:l15 level2 lfo16'><span style='mso-bookmark: 4075 Reflection_List'></span><a href="#Index_Peak_List"><span style='mso-bookmark: 4076 Reflection_List'><![if !supportLists]><span style='mso-fareast-font-family: 4077 "Times New Roman";color:windowtext;text-decoration:none;text-underline:none'><span 4078 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> 4079 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4080 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b 4385 auto;text-indent:-.25in;mso-list:l17 level2 lfo16'><span style='mso-bookmark: 4386 Reflection_List'><![if !supportLists]><span class=MsoHyperlink><span 4387 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4388 none;text-underline:none'><span style='mso-list:Ignore'>c.<span 4389 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 4390 href="#Index_Peak_List"><span style='mso-bookmark:Reflection_List'><span 4391 style='color:windowtext;text-decoration:none;text-underline:none'><span 4392 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b 4081 4393 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Refine 4082 4394 cell</span></b><span style='mso-fareast-font-family:"Times New Roman"'> – … … 4084 4396 style='mso-bidi-font-weight:normal'>Zero offset. </b>The results will be placed 4085 4397 in the <b style='mso-bidi-font-weight:normal'>Indexing Result</b> table with 4086 ‘<b style='mso-bidi-font-weight:normal'>use’</b> selected.</span></span></span></span><span 4087 style='mso-bookmark:Reflection_List'><span style='mso-fareast-font-family:"Times New Roman"; 4088 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p> 4398 ‘<b style='mso-bidi-font-weight:normal'>use’</b> selected.</span></span></span></span></a><span 4399 style='mso-bookmark:Reflection_List'><span class=MsoHyperlink><span 4400 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4401 none;text-underline:none'><o:p></o:p></span></span></span></p> 4089 4402 4090 4403 <p class=MsoListParagraphCxSpMiddle style='margin-left:.75in;mso-add-space: 4091 auto;text-indent:-.25in;mso-list:l15 level2 lfo16'><span style='mso-bookmark: 4092 Reflection_List'></span><a href="#Index_Peak_List"><span style='mso-bookmark: 4093 Reflection_List'><![if !supportLists]><span style='mso-fareast-font-family: 4094 "Times New Roman";color:windowtext;text-decoration:none;text-underline:none'><span 4095 style='mso-list:Ignore'>d.<span style='font:7.0pt "Times New Roman"'> 4096 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4097 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b 4404 auto;text-indent:-.25in;mso-list:l17 level2 lfo16'><span style='mso-bookmark: 4405 Reflection_List'><![if !supportLists]><span class=MsoHyperlink><span 4406 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4407 none;text-underline:none'><span style='mso-list:Ignore'>d.<span 4408 style='font:7.0pt "Times New Roman"'> </span></span></span></span><![endif]></span><a 4409 href="#Index_Peak_List"><span style='mso-bookmark:Reflection_List'><span 4410 style='color:windowtext;text-decoration:none;text-underline:none'><span 4411 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Index_Peak_List\0022 "'><b 4098 4412 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Make 4099 4413 new phase</span></b><span style='mso-fareast-font-family:"Times New Roman"'> 4100 – this creates a new phase from the selected unit cell and chosen space 4101 group. A dialog box will appear asking for a name for this phase. See the new 4102 entryunder Phases and the new lattice parameters will be in the <span4414 – this creates a new phase from the selected unit cell and chosen space group. 4415 A dialog box will appear asking for a name for this phase. See the new entry 4416 under Phases and the new lattice parameters will be in the <span 4103 4417 style='mso-field-code:" HYPERLINK \\l \0022General\0022 "'><u><span 4104 style='color:blue'>General</span></u></span> window for that phase.</span></span></span></span>< span4105 style='mso-bookmark:Reflection_List'><span style='mso-fareast-font-family:"Times New Roman";4106 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p> 4107 4108 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l15 level1 lfo16'><span 4109 style='mso-bookmark:Reflection_List'></span><a href="#Index_Peak_List"><span4418 style='color:blue'>General</span></u></span> window for that phase.</span></span></span></span></a><span 4419 style='mso-bookmark:Reflection_List'><span class=MsoHyperlink><span 4420 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4421 none;text-underline:none'><o:p></o:p></span></span></span></p> 4422 4423 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l17 level1 lfo16'><span 4110 4424 style='mso-bookmark:Reflection_List'><![if !supportLists]><span 4111 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4112 none;text-underline:none'><span style='mso-list:Ignore'>5.<span 4113 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4114 style='color:windowtext;text-decoration:none;text-underline:none'><span 4115 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'><b 4425 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4426 color:windowtext;text-decoration:none;text-underline:none'><span 4427 style='mso-list:Ignore'>5.<span style='font:7.0pt "Times New Roman"'> 4428 </span></span></span></span><![endif]></span><a href="#Index_Peak_List"><span 4429 style='mso-bookmark:Reflection_List'><span style='color:windowtext;text-decoration: 4430 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'><b 4116 4431 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Select 4117 4432 another solution – </span></b><span style='mso-fareast-font-family:"Times New Roman"'>the 4118 4433 plot will show (red dashed lines) the<b style='mso-bidi-font-weight:normal'> </b>generated 4119 4434 reflection positions for the choice; compare them to the peak positions (blue 4120 lines) and any unfitted peaks for conformation.</span></span></span></span>< span4121 style='mso-bookmark:Reflection_List'><span style='mso-fareast-font-family:"Times New Roman";4122 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p> 4123 4124 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l15 level1 lfo16'><span 4125 style='mso-bookmark:Reflection_List'></span><a href="#General"><span4435 lines) and any unfitted peaks for conformation.</span></span></span></span></a><span 4436 style='mso-bookmark:Reflection_List'><span class=MsoHyperlink><span 4437 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4438 none;text-underline:none'><o:p></o:p></span></span></span></p> 4439 4440 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l17 level1 lfo16'><span 4126 4441 style='mso-bookmark:Reflection_List'><![if !supportLists]><span 4127 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4128 none;text-underline:none'><span style='mso-list:Ignore'>6.<span 4129 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4130 style='color:windowtext;text-decoration:none;text-underline:none'><span 4131 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'><b 4442 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4443 color:windowtext;text-decoration:none;text-underline:none'><span 4444 style='mso-list:Ignore'>6.<span style='font:7.0pt "Times New Roman"'> 4445 </span></span></span></span><![endif]></span><a href="#General"><span 4446 style='mso-bookmark:Reflection_List'><span style='color:windowtext;text-decoration: 4447 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'><b 4132 4448 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Select 4133 4449 ‘keep’ –</span></b><span style='mso-fareast-font-family:"Times New Roman"'> 4134 4450 this preserves this solution for a subsequent indexing run; otherwise all 4135 solutions are erased before the indexing trial begins.</span></span></span></span><span 4136 style='mso-bookmark:Reflection_List'><span style='mso-fareast-font-family:"Times New Roman"; 4137 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></a></p> 4451 solutions are erased before the indexing trial begins.</span></span></span></span></a><span 4452 style='mso-bookmark:Reflection_List'><span class=MsoHyperlink><span 4453 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4454 none;text-underline:none'><o:p></o:p></span></span></span></p> 4138 4455 4139 4456 <h4><span style='mso-bookmark:Reflection_List'></span><a href="#General"><span … … 4141 4458 accent1;text-decoration:none;text-underline:none'><span style='mso-field-code: 4142 4459 " HYPERLINK \0022\0022 \\l \0022General\0022 "'><span style='mso-fareast-font-family: 4143 "Times New Roman"'>Reflection List</span></span></span></span>< span4144 style='mso-fareast-font-family:"Times New Roman";color:#4F81BD;mso-themecolor: 4145 accent1;text-decoration:none;text-underline:none'><o:p></o:p></span></a></h4>4460 "Times New Roman"'>Reflection List</span></span></span></span></a><span 4461 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4462 color:#4F81BD;mso-themecolor:accent1;text-decoration:none;text-underline:none'><o:p></o:p></span></span></h4> 4146 4463 4147 4464 <p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><a … … 4149 4466 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>This 4150 4467 window shows the reflections for the selected phase found in this powder data 4151 set. It is generated by a Rietveld or Pawley refinement. </span><o:p></o:p></span></a></span></p> 4468 set. It is generated by a Rietveld or Pawley refinement. </span></span></a><span 4469 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 4470 text-underline:none'><o:p></o:p></span></span></span></p> 4152 4471 4153 4472 <h5><span style='mso-fareast-font-family:"Times New Roman"'><a href="#General"><span 4154 4473 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 4155 4474 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>What can 4156 I do here?</span><o:p></o:p></span></a></span></h5> 4157 4158 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l19 level1 lfo17'><span 4159 style='mso-fareast-font-family:"Times New Roman"'><a href="#General"><![if !supportLists]><span 4160 style='color:windowtext;text-decoration:none;text-underline:none'><span 4475 I do here?</span></span></a><span class=MsoHyperlink><span style='color:#4F4FFF; 4476 text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 4477 4478 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l21 level1 lfo17'><![if !supportLists]><span 4479 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4480 color:windowtext;text-decoration:none;text-underline:none'><span 4161 4481 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> 4162 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4482 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 4483 "Times New Roman"'><a href="#General"><span style='color:windowtext;text-decoration: 4163 4484 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>Menu<b 4164 style='mso-bidi-font-weight:normal'> ‘Reflection List’ </b>– </span><o:p></o:p></span></a></span></p> 4485 style='mso-bidi-font-weight:normal'> ‘Reflection List’ </b>– </span></span></a><span 4486 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 4487 text-underline:none'><o:p></o:p></span></span></span></p> 4165 4488 4166 4489 <p class=MsoListParagraphCxSpLast style='margin-left:.75in;mso-add-space:auto; 4167 text-indent:-.25in;mso-list:l 19 level2 lfo17'><span style='mso-fareast-font-family:4168 "Times New Roman"'><a href="#General"><![if !supportLists]><span 4169 style='color:windowtext;text-decoration:none;text-underline:none'><span4490 text-indent:-.25in;mso-list:l21 level2 lfo17'><![if !supportLists]><span 4491 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4492 color:windowtext;text-decoration:none;text-underline:none'><span 4170 4493 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 4171 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4494 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 4495 "Times New Roman"'><a href="#General"><span style='color:windowtext;text-decoration: 4172 4496 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>Select 4173 4497 phase – if there is more than one phase; you can select another phase; 4174 the window title will show which phase is shown. </span><o:p></o:p></span></a></span></p> 4498 the window title will show which phase is shown. </span></span></a><span 4499 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 4500 text-underline:none'><o:p></o:p></span></span></span></p> 4175 4501 4176 4502 <h3><a href="#General"><span style='color:windowtext;text-decoration:none; … … 4178 4504 Crystal Histograms – HKLF</span></span></a></h3> 4179 4505 4506 <h4>Instrument Parameters</h4> 4507 4508 <p class=MsoNormal>This window shows the histogram type (SXC or SNC) and the 4509 wavelength. You may change the wavelength but rarely will need to do so.</p> 4510 4511 <h4>HKL Plot Controls</h4> 4512 4513 <p class=MsoNormal>This controls the display of the single crystal reflections 4514 on the plot. If available a green ring is shown for F-observed, a blue ring for 4515 F-calculated and a central disk for <span style='font-family:"Calibri","sans-serif"'>Δ</span>F 4516 (green for <span class=SpellE><span class=GramE>Fo</span></span><span 4517 class=GramE>></span>Fc and red for <span class=SpellE>Fo</span><Fc).</p> 4518 4519 <h5><span style='mso-fareast-font-family:"Times New Roman"'><a href="#General"><span 4520 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 4521 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>What can 4522 I do here?</span></span></a><o:p></o:p></span></h5> 4523 4524 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l0 level1 lfo31'><![if !supportLists]><span 4525 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span 4526 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 4527 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Change 4528 the scale</span></b><span style='mso-fareast-font-family:"Times New Roman"'> – 4529 move the slider, the rings will change their radius accordingly.<o:p></o:p></span></p> 4530 4531 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l0 level1 lfo31'><![if !supportLists]><span 4532 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span 4533 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 4534 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Select 4535 the zone</span></b><span style='mso-fareast-font-family:"Times New Roman"'> – 4536 select between 100, 010 or 001; plot axes will be labeled accordingly.<o:p></o:p></span></p> 4537 4538 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l0 level1 lfo31'><![if !supportLists]><span 4539 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span 4540 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 4541 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Select 4542 plot type</span></b><span style='mso-fareast-font-family:"Times New Roman"'> – 4543 the choices are either F or F<sup>2</sup>, </span><span style='font-family: 4544 "Calibri","sans-serif";mso-fareast-font-family:"Times New Roman"'>Δ</span><span 4545 style='mso-fareast-font-family:"Times New Roman"'>F<sup>2</sup>/</span><span 4546 class=GramE><span style='font-family:"Calibri","sans-serif";mso-fareast-font-family: 4547 "Times New Roman"'>σ(</span></span><span style='font-family:"Calibri","sans-serif"; 4548 mso-fareast-font-family:"Times New Roman"'>F<sup>2</sup>)</span><span 4549 style='mso-fareast-font-family:"Times New Roman"'>, </span><span 4550 style='font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman"'>Δ</span><span 4551 style='mso-fareast-font-family:"Times New Roman"'>F<sup>2</sup>></span><span 4552 style='font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman"'>σ(F<sup>2</sup>)</span><span 4553 style='mso-fareast-font-family:"Times New Roman"'> or </span><span 4554 style='font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman"'>Δ</span><span 4555 style='mso-fareast-font-family:"Times New Roman"'>F<sup>2</sup>>3</span><span 4556 style='font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman"'>σ(F<sup>2</sup>)</span><span 4557 style='mso-fareast-font-family:"Times New Roman"'>.<o:p></o:p></span></p> 4558 4559 <p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l0 level1 lfo31'><![if !supportLists]><span 4560 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>4.<span 4561 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 4562 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Select 4563 layer </span></b><span style='mso-fareast-font-family:"Times New Roman"'>– 4564 move the slider for upper layers for the selected zone.<o:p></o:p></span></p> 4565 4180 4566 <h4><span style='mso-fareast-font-family:"Times New Roman"'><a href="#General"><span 4181 4567 style='color:#4F81BD;mso-themecolor:accent1;text-decoration:none;text-underline: 4182 4568 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>Reflection 4183 List</span><o:p></o:p></span></a></span></h4> 4569 List</span></span></a><span class=MsoHyperlink><span style='color:#4F81BD; 4570 mso-themecolor:accent1;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h4> 4184 4571 4185 4572 <p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><a 4186 4573 href="#General"><span style='color:windowtext;text-decoration:none;text-underline: 4187 4574 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>This 4188 window shows the reflections for th e selected phase found in this data set4189 (single crystal or powder). For powder data, it is generated by a Rietveld or 4190 Pawley refinement. </span><o:p></o:p></span></a></span></p>4575 window shows the reflections for this single crystal data set. </span></span></a><span 4576 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 4577 text-underline:none'><o:p></o:p></span></span></span></p> 4191 4578 4192 4579 <h3><span style='mso-fareast-font-family:"Times New Roman"'><a href="#General"><span 4193 4580 style='color:windowtext;text-decoration:none;text-underline:none'><span 4194 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>Pair 4195 Distribution Functions - PDF</span></span><span style='mso-fareast-font-family: 4196 "Times New Roman";mso-fareast-theme-font:minor-fareast;color:windowtext; 4197 text-decoration:none;text-underline:none'><o:p></o:p></span></a></span></h3> 4581 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>Pair Distribution 4582 Functions - PDF</span></span></a></span><span class=MsoHyperlink><span 4583 style='color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></h3> 4198 4584 4199 4585 <h4><a name="PDF_Controls"></a><span style='mso-fareast-font-family:"Times New Roman"'><a 4200 4586 href="#General"><span style='color:#4F81BD;mso-themecolor:accent1;text-decoration: 4201 4587 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>PDF 4202 Controls</span><o:p></o:p></span></a></span></h4> 4588 Controls</span></span></a><span class=MsoHyperlink><span style='color:#4F81BD; 4589 mso-themecolor:accent1;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h4> 4203 4590 4204 4591 <p class=MsoNormal><a href="#General"><span style='color:windowtext;text-decoration: … … 4208 4595 <h4><a name="I_Q"></a><span style='mso-fareast-font-family:"Times New Roman"'><a 4209 4596 href="#General"><span style='color:#4F81BD;mso-themecolor:accent1;text-decoration: 4210 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'><span 4211 class=GramE>I(</span>Q), <span style='mso-bookmark:S_Q'></span>S(Q), <span 4212 style='mso-bookmark:F_Q'></span>F(Q) & <span style='mso-bookmark:G_R'></span>G(R)</span><o:p></o:p></span></a><![if !supportNestedAnchors]><a 4213 name="G_R"></a><a name="F_Q"></a><a name="S_Q"></a><![endif]></span></h4> 4597 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>I(Q), 4598 <span style='mso-bookmark:S_Q'></span>S(Q), <span style='mso-bookmark:F_Q'></span>F(Q) 4599 & <span style='mso-bookmark:G_R'></span>G(R)</span></span></a><![if !supportNestedAnchors]><a 4600 name="G_R"></a><a name="F_Q"></a><a name="S_Q"></a><![endif]><span 4601 class=MsoHyperlink><span style='color:#4F81BD;mso-themecolor:accent1; 4602 text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h4> 4214 4603 4215 4604 <p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><a 4216 4605 href="#General"><span style='color:windowtext;text-decoration:none;text-underline: 4217 4606 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>This 4218 window... </span><o:p></o:p></span></a></span></p> 4607 window... </span></span></a><span class=MsoHyperlink><span style='color:windowtext; 4608 text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></p> 4219 4609 4220 4610 <h3><span style='mso-fareast-font-family:"Times New Roman"'><a href="#General"><span 4221 4611 style='color:windowtext;text-decoration:none;text-underline:none'><span 4222 4612 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>2-D 4223 Images – IMG</span><o:p></o:p></span></a></span></h3> 4613 Images – IMG</span></span></a><span class=MsoHyperlink><span 4614 style='color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h3> 4615 4616 <h4><u>Comments<o:p></o:p></u></h4> 4617 4618 <p class=MsoNormal>This window shows whatever comment lines found in a “metadata” 4619 file when the image data file was read by GSAS-II. If you are lucky, there will 4620 be useful information here (e.g. sample name, date collected, wavelength used, 4621 etc.). If not, this window will be blank. The text is read-only.<o:p></o:p></p> 4224 4622 4225 4623 <h4><a href="#General"><span style='color:#4F81BD;mso-themecolor:accent1; … … 4231 4629 href="#General"><span style='color:windowtext;text-decoration:none;text-underline: 4232 4630 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'>This 4233 window... </span><o:p></o:p></span></a></span></p> 4631 window... </span></span></a><span class=MsoHyperlink><span style='color:windowtext; 4632 text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></p> 4234 4633 4235 4634 <h4><a href="#General"><span style='color:#4F81BD;mso-themecolor:accent1; 4236 4635 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022General\0022 "'><span 4237 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022_Image_Masks\0022 "'> Image4238 Ma<spanstyle='mso-bookmark:Image_Masks'></span>sks</span></span></span></a><![if !supportNestedAnchors]><a4636 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022_Image_Masks\0022 "'>Ma<span 4637 style='mso-bookmark:Image_Masks'></span>sks</span></span></span></a><![if !supportNestedAnchors]><a 4239 4638 name="Image_Masks"></a><![endif]></h4> 4240 4639 … … 4242 4641 href="#General"><span style='color:windowtext;text-decoration:none;text-underline: 4243 4642 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022_Image_Masks\0022 "'>This 4244 window... </span><o:p></o:p></span></a></span></p> 4643 window... </span></span></a><span class=MsoHyperlink><span style='color:windowtext; 4644 text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></p> 4245 4645 4246 4646 <h3><a href="#_Image_Masks"><span style='color:windowtext;text-decoration:none; … … 4254 4654 style='color:blue'>data tree</span></u></span>, parameters are shown for that 4255 4655 selected phase in a tabbed window. Clicking on each tab raises the windows 4256 listed below. Each tab is identified by the underlined phrase in the following:</span><o:p></o:p></span></a></span></p> 4656 listed below. Each tab is identified by the underlined phrase in the following:</span></span></a><span 4657 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 4658 text-underline:none'><o:p></o:p></span></span></span></p> 4257 4659 4258 4660 <h4><a name=General></a><a href="#_Image_Masks"><span style='mso-bookmark:General'><span 4259 4661 style='color:#4F81BD;mso-themecolor:accent1;text-decoration:none;text-underline: 4260 4662 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Data_tree\0022 "'><u>General</u> 4261 Phase Parameters</span></span></span></a>< /h4>4663 Phase Parameters</span></span></span></a><span style='mso-bookmark:General'></span></h4> 4262 4664 4263 4665 <span style='mso-bookmark:General'></span> … … 4267 4669 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Data_tree\0022 "'>This 4268 4670 gives overall parameters describing the phase such as the name, space group, 4269 the unit cell parameters and overall parameters for the atom present in the 4270 phase. It also has the controls for computing Fourier maps for this phase.</span><o:p></o:p></span></a></span></p> 4671 the unit cell parameters and overall parameters for the atom present in the phase. 4672 It also has the controls for computing Fourier maps for this phase.</span></span></a><span 4673 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 4674 text-underline:none'><o:p></o:p></span></span></span></p> 4271 4675 4272 4676 <h5><span style='mso-fareast-font-family:"Times New Roman"'><a href="#Data_tree"><span 4273 4677 style='color:#4F4FFF;text-decoration:none;text-underline:none'><span 4274 4678 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Data_tree\0022 "'>What 4275 can I do here?</span><o:p></o:p></span></a></span></h5> 4276 4277 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l0 level1 lfo18'><span 4278 style='mso-fareast-font-family:"Times New Roman"'><a href="#Data_tree"><![if !supportLists]><span 4679 can I do here?</span></span></a><span class=MsoHyperlink><span 4680 style='color:#4F4FFF;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 4681 4682 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l1 level1 lfo18'><![if !supportLists]><span 4683 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4684 color:windowtext;text-decoration:none;text-underline:none'><span 4685 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> 4686 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 4687 "Times New Roman"'><a href="#Data_tree"><span style='color:windowtext; 4688 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Data_tree\0022 "'>Menu 4689 ‘<b style='mso-bidi-font-weight:normal'>Compute’</b> – The 4690 compute menu shows computations that are possible for this phase.</span></span></a><span 4691 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 4692 text-underline:none'><o:p></o:p></span></span></span></p> 4693 4694 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4695 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4696 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4697 color:windowtext;text-decoration:none;text-underline:none'><span 4698 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 4699 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 4700 style='mso-fareast-font-family:"Times New Roman"'><a href="#Data_tree"><span 4279 4701 style='color:windowtext;text-decoration:none;text-underline:none'><span 4280 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> 4281 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4282 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Data_tree\0022 "'>Menu 4283 ‘<b style='mso-bidi-font-weight:normal'>Compute’</b> – The 4284 compute menu shows computations that are possible for this phase.</span><o:p></o:p></span></a></span></p> 4285 4286 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4287 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4288 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4289 href="#Data_tree"><![if !supportLists]><span style='color:windowtext; 4290 font-weight:normal;text-decoration:none;text-underline:none'><span 4291 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 4292 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4293 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Data_tree\0022 "'>Fourier 4702 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Data_tree\0022 "'>Fourier 4294 4703 maps<span style='font-weight:normal'> – compute Fourier maps according to 4295 the controls set at bottom of General page.</span></span></span><span 4296 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 4297 none'><o:p></o:p></span></a></span></b></p> 4298 4299 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4300 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4301 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4302 href="#Data_tree"><![if !supportLists]><span style='color:windowtext; 4303 font-weight:normal;text-decoration:none;text-underline:none'><span 4704 the controls set at bottom of General page.</span></span></span></a></span></b><span 4705 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4706 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 4707 4708 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4709 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4710 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4711 color:windowtext;text-decoration:none;text-underline:none'><span 4304 4712 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> 4305 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4306 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Data_tree\0022 "'>Search 4713 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 4714 style='mso-fareast-font-family:"Times New Roman"'><a href="#Data_tree"><span 4715 style='color:windowtext;text-decoration:none;text-underline:none'><span 4716 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Data_tree\0022 "'>Search 4307 4717 maps <span style='font-weight:normal'>– search the computed Fourier map. 4308 4718 Peaks that are above ‘Peak cutoff’ % of the maximum will be found … … 4311 4721 style='color:blue'>Map peaks</span></u></span></span>’ page. This page 4312 4722 will immediately be shown and the peaks will be shown on the structure drawing 4313 for this phase as white 3-D crosses.</span></span></span>< span4314 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 4315 none'><o:p></o:p></span></a><![if !supportNestedAnchors]><a name="Map_peaks"></a><![endif]></span></b></p> 4316 4317 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4318 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight:4319 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4320 href="#Data_tree"><![if !supportLists]><span style='color:windowtext;4321 font-weight:normal;text-decoration:none;text-underline:none'><span4723 for this phase as white 3-D crosses.</span></span></span></a><![if !supportNestedAnchors]><a 4724 name="Map_peaks"></a><![endif]></span></b><span class=MsoHyperlink><span 4725 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 4726 none;text-underline:none'><o:p></o:p></span></span></p> 4727 4728 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4729 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4730 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4731 color:windowtext;text-decoration:none;text-underline:none'><span 4322 4732 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> 4323 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4324 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Charge 4325 flipping <span style='font-weight:normal'>– This performs a charge 4326 flipping <span class=SpellE><i style='mso-bidi-font-style:normal'>ab</i></span><i 4327 style='mso-bidi-font-style:normal'> initio</i> structure solution using the 4328 method of <span class=SpellE>Oszlanyi</span> & <span class=SpellE>Suto</span> 4329 (<span class=SpellE>Acta</span> <span class=SpellE>Cryst</span>. A60, 134-141, 4330 2004). You will need to select a source for the reflection set and perhaps 4331 select an element for normalization by its form factor, a resolution limit 4332 (usually 0.5A) and a charge flip threshold (usually 0.1); these are found at 4333 the bottom of the </span>General<span style='font-weight:normal'> window. A 4334 progress bar showing the charge flip residual is shown while the charge flip is 4335 in operation. When the residual is no longer decreasing (be patient – it 4336 doesn’t necessarily fall continuously), press the </span>Cancel<span 4337 style='font-weight:normal'> button to stop the charge flipping. The resulting 4338 map will be positioned to properly place symmetry operators (NB: depends on the 4339 quality of the resulting phases), searched for peaks and the display shifts to </span>Map 4340 peaks<span style='font-weight:normal'> to show them.</span></span></span><span 4341 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 4342 none'><o:p></o:p></span></a></span></b></p> 4343 4344 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4345 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4346 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4347 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4348 font-weight:normal;text-decoration:none;text-underline:none'><span 4733 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 4734 style='mso-fareast-font-family:"Times New Roman"'><a href="#Data_tree"><span 4735 style='color:windowtext;text-decoration:none;text-underline:none'><span 4736 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Charge flipping <span 4737 style='font-weight:normal'>– This performs a charge flipping <i 4738 style='mso-bidi-font-style:normal'>ab initio</i> structure solution using the 4739 method of Oszlanyi & Suto (Acta Cryst. A60, 134-141, 2004). You will need 4740 to select a source for the reflection set and perhaps select an element for 4741 normalization by its form factor, a resolution limit (usually 0.5A) and a charge 4742 flip threshold (usually 0.1); these are found at the bottom of the </span>General<span 4743 style='font-weight:normal'> window. A progress bar showing the charge flip 4744 residual is shown while the charge flip is in operation. When the residual is 4745 no longer decreasing (be patient – it doesn’t necessarily fall 4746 continuously), press the </span>Cancel<span style='font-weight:normal'> button 4747 to stop the charge flipping. The resulting map will be positioned to properly 4748 place symmetry operators (NB: depends on the quality of the resulting phases), 4749 searched for peaks and the display shifts to </span>Map peaks<span 4750 style='font-weight:normal'> to show them.</span></span></span></a></span></b><span 4751 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4752 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 4753 4754 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4755 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4756 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4757 color:windowtext;text-decoration:none;text-underline:none'><span 4349 4758 style='mso-list:Ignore'>d.<span style='font:7.0pt "Times New Roman"'> 4350 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4351 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Clear 4352 map <span style='font-weight:normal'>– This clears any Fourier/charge 4353 flip map from memory; the Fourier map controls are also cleared.</span></span></span><span 4354 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 4355 none'><o:p></o:p></span></a></span></b></p> 4356 4357 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l0 level1 lfo18'><span 4358 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><![if !supportLists]><span 4759 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 4760 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 4359 4761 style='color:windowtext;text-decoration:none;text-underline:none'><span 4762 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Clear map <span 4763 style='font-weight:normal'>– This clears any Fourier/charge flip map from 4764 memory; the Fourier map controls are also cleared.</span></span></span></a></span></b><span 4765 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4766 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 4767 4768 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 level1 lfo18'><![if !supportLists]><span 4769 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4770 color:windowtext;text-decoration:none;text-underline:none'><span 4360 4771 style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'> 4361 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4362 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>The 4772 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 4773 "Times New Roman"'><a href="gsasII.html"><span style='color:windowtext; 4774 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>The 4363 4775 items in the upper part of the General page that can be changed are Phase name, 4364 4776 Phase type, Space group, unit cell parameters & refine flag. These are 4365 described in turn:</span></span>< span style='color:windowtext'><o:p></o:p></span></a></span></p>4366 4367 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4368 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight:4369 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4370 href="gsasII.html"><![if !supportLists]><span style='color:windowtext;4371 font-weight:normal;text-decoration:none;text-underline:none'><span4777 described in turn:</span></span></a><span class=MsoHyperlink><span 4778 style='color:windowtext'><o:p></o:p></span></span></span></p> 4779 4780 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4781 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4782 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4783 color:windowtext;text-decoration:none;text-underline:none'><span 4372 4784 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 4373 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4374 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Phase 4375 name<span style='font-weight:normal'> – this is the name assigned to this 4376 phase. It should only be changed when the phase is initialized or imported.</span></span></span><span 4377 style='color:windowtext;font-weight:normal'><o:p></o:p></span></a></span></b></p> 4378 4379 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4380 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4381 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4382 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4383 font-weight:normal;text-decoration:none;text-underline:none'><span 4785 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 4786 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 4787 style='color:windowtext;text-decoration:none;text-underline:none'><span 4788 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Phase name<span 4789 style='font-weight:normal'> – this is the name assigned to this phase. It 4790 should only be changed when the phase is initialized or imported.</span></span></span></a></span></b><span 4791 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4792 color:windowtext'><o:p></o:p></span></span></p> 4793 4794 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4795 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4796 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4797 color:windowtext;text-decoration:none;text-underline:none'><span 4384 4798 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> 4385 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4386 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Phase 4387 type – <span style='font-weight:normal'>this can only be set when there 4388 are no atoms in the Atoms page for this phase. Select it when the phase is 4389 initialized.</span></span></span><span style='color:windowtext;font-weight: 4390 normal'><o:p></o:p></span></a></span></b></p> 4391 4392 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4393 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4394 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4395 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4396 font-weight:normal;text-decoration:none;text-underline:none'><span 4799 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 4800 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 4801 style='color:windowtext;text-decoration:none;text-underline:none'><span 4802 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Phase type – <span 4803 style='font-weight:normal'>this can only be set when there are no atoms in the 4804 Atoms page for this phase. Select it when the phase is initialized.</span></span></span></a></span></b><span 4805 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4806 color:windowtext'><o:p></o:p></span></span></p> 4807 4808 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4809 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4810 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4811 color:windowtext;text-decoration:none;text-underline:none'><span 4397 4812 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> 4398 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4399 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Space 4400 group<span style='font-weight:normal'> – this should be set when the 4401 phase is initialized; it can be changed later. Be careful about the impact on 4402 Atom site symmetry and multiplicity if you do. GSAS-II will recognize any legal 4403 space group symbol using the short Hermann-<span class=SpellE>Mauguin</span> 4404 forms; put a space between the axial fields (e.g. ‘F d 3 m’ not 4405 ‘Fd3m’). For space groups with a choice of origin (e.g. F d 3 m), 4406 GSAS-II always uses the 2<sup>nd</sup> setting where the center of inversion is 4407 located at the origin. The choice of space group will set the available unit 4408 cell parameters.</span></span></span><span style='color:windowtext;font-weight: 4409 normal'><o:p></o:p></span></a></span></b></p> 4410 4411 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4412 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4413 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4414 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4415 font-weight:normal;text-decoration:none;text-underline:none'><span 4416 style='mso-list:Ignore'>d.<span style='font:7.0pt "Times New Roman"'> 4417 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4418 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Refine 4419 unit cell<span style='font-weight:normal'> – set this flag to refine the 4420 unit cell parameters in a Rietveld or Pawley refinement. The actual parameters 4421 refined are the symmetry allowed terms (A<sub>0</sub>-A<sub>5</sub>) in the expression</span><i 4422 style='mso-bidi-font-style:normal'><span style='font-family:"Cambria Math","serif"; 4423 font-weight:normal'><br> 4813 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 4814 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 4815 style='color:windowtext;text-decoration:none;text-underline:none'><span 4816 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Space group<span 4817 style='font-weight:normal'> – this should be set when the phase is 4818 initialized; it can be changed later. Be careful about the impact on Atom site 4819 symmetry and multiplicity if you do. GSAS-II will recognize any legal space 4820 group symbol using the short Hermann-Mauguin forms; put a space between the 4821 axial fields (e.g. ‘F d 3 m’ not ‘Fd3m’). For space 4822 groups with a choice of origin (e.g. F d 3 m), GSAS-II always uses the 2<sup>nd</sup> 4823 setting where the center of inversion is located at the origin. The choice of 4824 space group will set the available unit cell parameters.</span></span></span></a></span></b><span 4825 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4826 color:windowtext'><o:p></o:p></span></span></p> 4827 4828 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4829 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4830 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span 4831 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 4832 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4833 href="gsasII.html"><span style='color:windowtext;text-decoration:none; 4834 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Refine 4835 unit cell<span style='font-weight:normal'> – set this flag to refine the unit 4836 cell parameters in a Rietveld or Pawley refinement. The actual parameters 4837 refined are the symmetry allowed terms (A<sub>0</sub>-A<sub>5</sub>) in the 4838 expression</span><i style='mso-bidi-font-style:normal'><span style='font-family: 4839 "Cambria Math","serif";font-weight:normal'><br> 4424 4840 </span></i></span></span></a></span></b><!--[if gte msEquation 12]><m:oMath><m:sSup><m:sSupPr><span 4425 4841 style='font-family:"Cambria Math","serif";mso-ascii-font-family:"Cambria Math"; … … 4517 4933 4518 4934 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4519 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4520 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4521 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4522 font-weight:normal;text-decoration:none;text-underline:none'><span 4935 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4936 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4937 color:windowtext;text-decoration:none;text-underline:none'><span 4523 4938 style='mso-list:Ignore'>e.<span style='font:7.0pt "Times New Roman"'> 4524 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4525 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'><span 4526 class=GramE>a</span>, b, c, alpha, beta, gamma<span style='font-weight:normal'> 4527 – lattice parameters; only those permitted by the space group are shown. 4528 The <span class=GramE>volume<span style='mso-spacerun:yes'> </span>is</span> 4529 computed from the values entered.</span></span></span><span style='mso-fareast-font-family: 4530 "Times New Roman";mso-fareast-theme-font:minor-fareast;color:windowtext; 4531 font-weight:normal'><o:p></o:p></span></a></span></b></p> 4532 4533 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l0 level1 lfo18'><span 4534 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><![if !supportLists]><span 4939 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 4940 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 4535 4941 style='color:windowtext;text-decoration:none;text-underline:none'><span 4942 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>a, b, c, alpha, 4943 beta, gamma<span style='font-weight:normal'> – lattice parameters; only 4944 those permitted by the space group are shown. The volume<span 4945 style='mso-spacerun:yes'> </span>is computed from the values entered.</span></span></span></a></span></b><span 4946 class=MsoHyperlink><span style='color:windowtext'><o:p></o:p></span></span></p> 4947 4948 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 level1 lfo18'><![if !supportLists]><span 4949 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4950 color:windowtext;text-decoration:none;text-underline:none'><span 4536 4951 style='mso-list:Ignore'>3.<span style='font:7.0pt "Times New Roman"'> 4537 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4538 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>If 4952 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 4953 "Times New Roman"'><a href="gsasII.html"><span style='color:windowtext; 4954 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>If 4539 4955 there are entries in the Atoms page then the Elements table is shown next on 4540 4956 the General page; you may select the isotope (only relevant for neutron 4541 4957 diffraction experiments). The density (just above the Elements) is computed 4542 4958 depending on this choice, the unit cell volume and the atom fractions/site 4543 multiplicities in the entries on the Atoms page.</span></span><span 4544 style='color:windowtext'><o:p></o:p></span></a></span></p> 4545 4546 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l0 level1 lfo18'><span 4547 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><![if !supportLists]><span 4959 multiplicities in the entries on the Atoms page.</span></span></a><span 4960 class=MsoHyperlink><span style='color:windowtext'><o:p></o:p></span></span></span></p> 4961 4962 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 level1 lfo18'><![if !supportLists]><span 4963 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4964 color:windowtext;text-decoration:none;text-underline:none'><span 4965 style='mso-list:Ignore'>4.<span style='font:7.0pt "Times New Roman"'> 4966 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 4967 "Times New Roman"'><a href="gsasII.html"><span style='color:windowtext; 4968 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Next 4969 are the Pawley controls.</span></span></a><span class=MsoHyperlink><span 4970 style='color:windowtext'><o:p></o:p></span></span></span></p> 4971 4972 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4973 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4974 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4975 color:windowtext;text-decoration:none;text-underline:none'><span 4976 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 4977 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 4978 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 4548 4979 style='color:windowtext;text-decoration:none;text-underline:none'><span 4549 style='mso-list:Ignore'>4.<span style='font:7.0pt "Times New Roman"'> 4550 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4551 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Next 4552 are the Pawley controls.</span></span><span style='color:windowtext'><o:p></o:p></span></a></span></p> 4553 4554 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4555 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4556 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4557 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4558 font-weight:normal;text-decoration:none;text-underline:none'><span 4559 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 4560 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4561 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Do 4562 Pawley refinement?<span style='font-weight:normal'> – This must be chosen 4563 to perform a Pawley refinement as opposed to a Rietveld refinement for this 4564 phase. </span>NB:<span style='font-weight:normal'> you probably should clear 4565 the </span>Histogram scale factor<span style='font-weight:normal'> refinement 4566 flag (found in </span>Sample parameters<span style='font-weight:normal'> for 4567 the powder data set) as it cannot be refined simultaneously with the Pawley 4568 reflection intensities.</span></span></span><span style='color:windowtext; 4569 font-weight:normal'><o:p></o:p></span></a></span></b></p> 4570 4571 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4572 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4573 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4574 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4575 font-weight:normal;text-decoration:none;text-underline:none'><span 4980 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Do Pawley 4981 refinement?<span style='font-weight:normal'> – This must be chosen to 4982 perform a Pawley refinement as opposed to a Rietveld refinement for this phase. 4983 </span>NB:<span style='font-weight:normal'> you probably should clear the </span>Histogram 4984 scale factor<span style='font-weight:normal'> refinement flag (found in </span>Sample 4985 parameters<span style='font-weight:normal'> for the powder data set) as it 4986 cannot be refined simultaneously with the Pawley reflection intensities.</span></span></span></a></span></b><span 4987 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4988 color:windowtext'><o:p></o:p></span></span></p> 4989 4990 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4991 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 4992 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 4993 color:windowtext;text-decoration:none;text-underline:none'><span 4576 4994 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> 4577 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4578 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Pawley 4579 <span class=SpellE>dmin</span><span style='font-weight:normal'> – This is 4580 the minimum d-spacing to be used in a Pawley refinement. </span>NB:<span 4581 style='font-weight:normal'> be sure to set this to match the minimum d-spacing 4582 indicated by the powder pattern limits (see </span>Limits<span 4583 style='font-weight:normal'> for the powder data set).</span></span></span><span 4584 style='color:windowtext;font-weight:normal'><o:p></o:p></span></a></span></b></p> 4585 4586 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4587 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4588 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4589 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4590 font-weight:normal;text-decoration:none;text-underline:none'><span 4995 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 4996 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 4997 style='color:windowtext;text-decoration:none;text-underline:none'><span 4998 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Pawley dmin<span 4999 style='font-weight:normal'> – This is the minimum d-spacing to be used in 5000 a Pawley refinement. </span>NB:<span style='font-weight:normal'> be sure to set 5001 this to match the minimum d-spacing indicated by the powder pattern limits (see 5002 </span>Limits<span style='font-weight:normal'> for the powder data set).</span></span></span></a></span></b><span 5003 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5004 color:windowtext'><o:p></o:p></span></span></p> 5005 5006 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5007 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5008 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5009 color:windowtext;text-decoration:none;text-underline:none'><span 4591 5010 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> 4592 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4593 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Pawley 4594 neg. wt.<span style='font-weight:normal'> – This is the weight for a 4595 penalty function applied during a Pawley refinement on resulting negative 4596 intensities. Use with caution; initially try very small values (e.g. 10<sup>-8</sup>). 4597 A value of zero means no penalty is applied.</span></span></span><span 4598 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 4599 none'><o:p></o:p></span></a></span></b></p> 4600 4601 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l0 level1 lfo18'><span 4602 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><![if !supportLists]><span 5011 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 5012 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 4603 5013 style='color:windowtext;text-decoration:none;text-underline:none'><span 5014 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Pawley neg. wt.<span 5015 style='font-weight:normal'> – This is the weight for a penalty function 5016 applied during a Pawley refinement on resulting negative intensities. Use with 5017 caution; initially try very small values (e.g. .01). A value of zero means no 5018 penalty is applied.</span></span></span></a></span></b><span 5019 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5020 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 5021 5022 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 level1 lfo18'><![if !supportLists]><span 5023 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5024 color:windowtext;text-decoration:none;text-underline:none'><span 4604 5025 style='mso-list:Ignore'>5.<span style='font:7.0pt "Times New Roman"'> 4605 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4606 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Fourier 5026 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 5027 "Times New Roman"'><a href="gsasII.html"><span style='color:windowtext; 5028 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Fourier 4607 5029 map controls are shown next on the General page. A completed Rietveld or Pawley 4608 5030 refinement is required before a Fourier map can be computed. Select the desired 4609 5031 type of map, the source of the reflection set and the map resolution desired. 4610 5032 The peak cutoff is defined as a percentage of the maximum and defines the 4611 lowest level considered in the peak search.</span></span><span 4612 style='color:windowtext'><o:p></o:p></span></a></span></p> 4613 4614 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l0 level1 lfo18'><span 4615 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><![if !supportLists]><span 5033 lowest level considered in the peak search.</span></span></a><span 5034 class=MsoHyperlink><span style='color:windowtext'><o:p></o:p></span></span></span></p> 5035 5036 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 level1 lfo18'><![if !supportLists]><span 5037 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5038 color:windowtext;text-decoration:none;text-underline:none'><span 5039 style='mso-list:Ignore'>6.<span style='font:7.0pt "Times New Roman"'> 5040 </span></span></span></span><![endif]><span style='mso-fareast-font-family: 5041 "Times New Roman"'><a href="gsasII.html"><span style='color:windowtext; 5042 text-decoration:none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Charge 5043 flip controls are below the Fourier map controls.</span></span></a><span 5044 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 5045 text-underline:none'><o:p></o:p></span></span></span></p> 5046 5047 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5048 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5049 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5050 color:windowtext;text-decoration:none;text-underline:none'><span 5051 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 5052 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 5053 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 4616 5054 style='color:windowtext;text-decoration:none;text-underline:none'><span 4617 style='mso-list:Ignore'>6.<span style='font:7.0pt "Times New Roman"'> 4618 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4619 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Charge 4620 flip controls are below the Fourier map controls.</span><o:p></o:p></span></a></span></p> 4621 4622 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4623 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4624 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4625 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4626 font-weight:normal;text-decoration:none;text-underline:none'><span 4627 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 4628 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4629 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Reflection 5055 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Reflection set from<span 5056 style='font-weight:normal'> – This is the source of structure factors to 5057 be used in a charge flip calculation. These may be either a single crystal data 5058 set, or structure factors extracted from a powder pattern via a Pawley 5059 refinement or a Rietveld refinement.</span></span></span></a></span></b><span 5060 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5061 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 5062 5063 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5064 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5065 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5066 color:windowtext;text-decoration:none;text-underline:none'><span 5067 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> 5068 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 5069 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 5070 style='color:windowtext;text-decoration:none;text-underline:none'><span 5071 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Normalizing element 5072 <span style='font-weight:normal'>– This is an element form factor chosen 5073 to normalize the structure factors before charge flipping. </span>None<span 5074 style='font-weight:normal'> (the default) can be selected from the lower right 5075 of the Periodic Table display shown when this is selected.</span></span></span></a></span></b><span 5076 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5077 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 5078 5079 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5080 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5081 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5082 color:windowtext;text-decoration:none;text-underline:none'><span 5083 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> 5084 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 5085 style='mso-fareast-font-family:"Times New Roman"'><a href="gsasII.html"><span 5086 style='color:windowtext;text-decoration:none;text-underline:none'><span 5087 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Resolution <span 5088 style='font-weight:normal'>– This is the resolution of the charge flip 5089 map; default is 0.5A. The set of reflections is expanded to a full sphere and 5090 zero filled to this resolution limit; this suite of reflections is then used 5091 for charge flipping.</span></span></span></a></span></b><span 5092 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5093 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 5094 5095 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5096 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5097 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span 5098 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 5099 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 5100 href="gsasII.html"><span style='color:windowtext;text-decoration:none; 5101 text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>k-Factor<span 5102 style='font-weight:normal'> – This is the threshold on the density map, 5103 all densities below this are charge flipped.</span></span></span></a></span></b><span 5104 style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></p> 5105 5106 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5107 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5108 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>e.<span 5109 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 5110 class=GramE><b style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family: 5111 "Times New Roman"'>k-Max</span></b></span><span style='mso-fareast-font-family: 5112 "Times New Roman"'> – This is an upper threshold on the density may; all 5113 densities above this are charge flipped. In this way the “uranium 5114 solution” problem is avoided. Use k-Max = 10-12 for equal atom problems 5115 and larger for heavy atom ones.<o:p></o:p></span></p> 5116 5117 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l1 level1 lfo18'><![if !supportLists]><span 5118 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>7.<span 5119 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 5120 style='mso-fareast-font-family:"Times New Roman"'>Monte Carlo/Simulated 5121 Annealing controls are at the bottom of the window. (Future capability & 5122 under development).<o:p></o:p></span></p> 5123 5124 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5125 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5126 style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span 5127 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 5128 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 5129 href="gsasII.html"><span style='color:windowtext;text-decoration:none; 5130 text-underline:none'><span style='mso-field-code:"HYPERLINK \0022D\:\\\\GSASII\\\\help\\\\gsasII\.html\0022"'>Reflection 4630 5131 set from<span style='font-weight:normal'> – This is the source of 4631 5132 structure factors to be used in a charge flip calculation. These may be either 4632 5133 a single crystal data set, or structure factors extracted from a powder pattern 4633 via a Pawley refinement or a Rietveld refinement.</span></span></span><span 4634 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 4635 none'><o:p></o:p></span></a></span></b></p> 4636 4637 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4638 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4639 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4640 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4641 font-weight:normal;text-decoration:none;text-underline:none'><span 5134 via a Pawley refinement or a Rietveld refinement.</span></span></span></a></span></b><span 5135 style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></p> 5136 5137 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5138 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5139 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5140 color:windowtext;text-decoration:none;text-underline:none'><span 4642 5141 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> 4643 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4644 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Normalizing 4645 element <span style='font-weight:normal'>– This is an element form factor 4646 chosen to normalize the structure factors before charge flipping. </span>None<span 4647 style='font-weight:normal'> (the default) can be selected from the lower right 4648 of the Periodic Table display shown when this is selected.</span></span></span><span 4649 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 4650 none'><o:p></o:p></span></a></span></b></p> 4651 4652 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4653 auto;text-indent:-.25in;mso-list:l0 level2 lfo18'><b style='mso-bidi-font-weight: 4654 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4655 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4656 font-weight:normal;text-decoration:none;text-underline:none'><span 5142 </span></span></span></span><![endif]><span class=GramE><b style='mso-bidi-font-weight: 5143 normal'><span style='mso-fareast-font-family:"Times New Roman"'>d-min</span></b></span><b 5144 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'> 5145 </span></b><span style='mso-fareast-font-family:"Times New Roman"'>- This 5146 restricts the set of reflections to be used in the MC/SA run.<span 5147 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 5148 text-underline:none'><o:p></o:p></span></span></span></p> 5149 5150 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5151 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5152 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5153 color:windowtext;text-decoration:none;text-underline:none'><span 4657 5154 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> 4658 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4659 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Resolution 4660 <span style='font-weight:normal'>– This is the resolution of the charge 4661 flip map; default is 0.5A. The set of reflections is expanded to a full sphere 4662 and zero filled to this resolution limit; this suite of reflections is then 4663 used for charge flipping.</span></span></span><span style='color:windowtext; 4664 font-weight:normal;text-decoration:none;text-underline:none'><o:p></o:p></span></a></span></b></p> 5155 </span></span></span></span><![endif]><span class=MsoHyperlink><b 5156 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"; 5157 color:windowtext;text-decoration:none;text-underline:none'>MC/SA algorithm</span></b></span><span 5158 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5159 color:windowtext;text-decoration:none;text-underline:none'> – This 5160 selects the type of jump to be used for each MC/SA trial.<o:p></o:p></span></span></p> 5161 5162 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5163 auto;text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5164 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5165 color:windowtext;text-decoration:none;text-underline:none'><span 5166 style='mso-list:Ignore'>d.<span style='font:7.0pt "Times New Roman"'> 5167 </span></span></span></span><![endif]><span class=MsoHyperlink><b 5168 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"; 5169 color:windowtext;text-decoration:none;text-underline:none'>Annealing schedule</span></b></span><span 5170 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5171 color:windowtext;text-decoration:none;text-underline:none'> – This selects 5172 the beginning MC/SA “temperature”, final “temperature”, 5173 slope and number of trials at each step.<o:p></o:p></span></span></p> 4665 5174 4666 5175 <p class=MsoListParagraphCxSpLast style='margin-left:1.0in;mso-add-space:auto; 4667 text-indent:-.25in;mso-list:l 0 level2 lfo18'><b style='mso-bidi-font-weight:4668 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4669 href="gsasII.html"><![if !supportLists]><span style='color:windowtext; 4670 font-weight:normal;text-decoration:none;text-underline:none'><span 4671 style='mso-list:Ignore'>d.<span style='font:7.0pt "Times New Roman"'> 4672 </span></span></span><![endif]><span style='color:windowtext;text-decoration: 4673 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'><span4674 class= GramE>k-Factor</span><span style='font-weight:normal'> – This is4675 the threshold on the density map, all densities below this are charge flipped.</span></span></span><span4676 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 4677 none'><o:p></o:p></span></a></span></b></p>5176 text-indent:-.25in;mso-list:l1 level2 lfo18'><![if !supportLists]><span 5177 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5178 color:windowtext;text-decoration:none;text-underline:none'><span 5179 style='mso-list:Ignore'>e.<span style='font:7.0pt "Times New Roman"'> 5180 </span></span></span></span><![endif]><span class=MsoHyperlink><b 5181 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"; 5182 color:windowtext;text-decoration:none;text-underline:none'>A-jump & B-jump</span></b></span><span 5183 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5184 color:windowtext;text-decoration:none;text-underline:none'> – If the “<span 5185 class=SpellE>Tremayne</span>” algorithm is chosen these determine the jump 5186 components for each trial.<o:p></o:p></span></span></p> 4678 5187 4679 5188 <h4><a name=Data></a><u><span style='mso-fareast-font-family:"Times New Roman"'><a 4680 5189 href="gsasII.html"><span style='color:#4F81BD;mso-themecolor:accent1'><span 4681 5190 style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'>Data <span 4682 style='text-decoration:none;text-underline:none'>sets</span></span><o:p></o:p></span></a></span></u></h4> 5191 style='text-decoration:none;text-underline:none'>sets</span></span></span></a><span 5192 class=MsoHyperlink><span style='color:#4F81BD;mso-themecolor:accent1'><o:p></o:p></span></span></span></u></h4> 4683 5193 4684 5194 <h5><span style='mso-fareast-font-family:"Times New Roman"'><a … … 4687 5197 can I do here?<i style='mso-bidi-font-style:normal'><span style='font-family: 4688 5198 "Cambria Math","serif"'><br> 4689 </span></i></span></span>< span style='mso-fareast-font-family:"Times New Roman";4690 mso-fareast-theme-font:minor-fareast;color:windowtext;font-weight:normal; 4691 text-decoration:none;text-underline:none'><o:p></o:p></span></a></span></h5>5199 </span></i></span></span></a></span><span class=MsoHyperlink><span 5200 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 5201 none'><o:p></o:p></span></span></h5> 4692 5202 4693 5203 <h4><a name=Atoms></a><u><a href="gsasII.html"><span style='color:#4F81BD; 4694 5204 mso-themecolor:accent1'><span style='mso-field-code:" HYPERLINK \0022gsasII\.html\0022 "'><span 4695 5205 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'><span 4696 style='color:blue'>Atoms</span></span></span></span><span style='font-size: 4697 12.0pt;font-family:"Times New Roman","serif";mso-fareast-font-family:"Times New Roman"; 4698 color:#4F4FFF;font-style:normal;text-decoration:none;text-underline:none'><o:p></o:p></span></a></u></h4> 5206 style='color:blue'>Atoms</span></span></span></span></a></u><span 5207 class=MsoHyperlink><span style='font-size:12.0pt;font-family:"Times New Roman","serif"; 5208 mso-fareast-font-family:"Times New Roman";color:#4F4FFF;font-style:normal; 5209 text-decoration:none;text-underline:none'><o:p></o:p></span></span></h4> 4699 5210 4700 5211 <p class=MsoNormal><a href="gsasII.html"><span style='color:windowtext; … … 4708 5219 target="_self"><span style='color:#4F4FFF;text-decoration:none;text-underline: 4709 5220 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>What 4710 can I do here?</span><o:p></o:p></span></a></span></h5> 4711 4712 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l2 level1 lfo19'><b 4713 style='mso-bidi-font-weight:normal'><a href="#Atoms" target="_self"><![if !supportLists]><span 4714 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4715 normal;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>1.<span 4716 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4717 style='color:windowtext;text-decoration:none;text-underline:none'><span 4718 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Atom<span 5221 can I do here?</span></span></a><span class=MsoHyperlink><span 5222 style='color:#4F4FFF;text-decoration:none;text-underline:none'><o:p></o:p></span></span></span></h5> 5223 5224 <p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l3 level1 lfo19'><![if !supportLists]><span 5225 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5226 color:windowtext;text-decoration:none;text-underline:none'><span 5227 style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'> 5228 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><a 5229 href="#Atoms" target="_self"><span style='color:windowtext;text-decoration: 5230 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Atom<span 4719 5231 style='mso-fareast-font-family:"Times New Roman"'> selection from table</span><span 4720 5232 style='mso-fareast-font-family:"Times New Roman";font-weight:normal'> - These 4721 are controlled by the mouse and the Shift/Ctrl/Alt keys:</span></span></span><span 4722 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4723 normal;text-decoration:none;text-underline:none'><o:p></o:p></span></a></b></p> 4724 4725 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4726 auto;text-indent:-.25in;mso-list:l2 level2 lfo19'><b style='mso-bidi-font-weight: 4727 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a href="#Atoms" 4728 target="_self"><![if !supportLists]><span style='color:windowtext;font-weight: 4729 normal;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>a.<span 4730 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4731 style='color:windowtext;text-decoration:none;text-underline:none'><span 4732 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Left 5233 are controlled by the mouse and the Shift/Ctrl/Alt keys:</span></span></span></a></b><span 5234 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5235 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 5236 5237 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5238 auto;text-indent:-.25in;mso-list:l3 level2 lfo19'><![if !supportLists]><span 5239 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5240 color:windowtext;text-decoration:none;text-underline:none'><span 5241 style='mso-list:Ignore'>a.<span style='font:7.0pt "Times New Roman"'> 5242 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 5243 style='mso-fareast-font-family:"Times New Roman"'><a href="#Atoms" 5244 target="_self"><span style='color:windowtext;text-decoration:none;text-underline: 5245 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Left 4733 5246 Mouse Button (LMB)<span style='font-weight:normal'> – on a row number 4734 selects the atom.</span></span></span><span style='color:windowtext;font-weight: 4735 normal;text-decoration:none;text-underline:none'><o:p></o:p></span></a></span></b></p> 4736 4737 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4738 auto;text-indent:-.25in;mso-list:l2 level2 lfo19'><b style='mso-bidi-font-weight: 4739 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a href="#Atoms" 4740 target="_self"><![if !supportLists]><span style='color:windowtext;font-weight: 4741 normal;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>b.<span 4742 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4743 style='color:windowtext;text-decoration:none;text-underline:none'><span 4744 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Shift 5247 selects the atom.</span></span></span></a></span></b><span class=MsoHyperlink><span 5248 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 5249 none;text-underline:none'><o:p></o:p></span></span></p> 5250 5251 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5252 auto;text-indent:-.25in;mso-list:l3 level2 lfo19'><![if !supportLists]><span 5253 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5254 color:windowtext;text-decoration:none;text-underline:none'><span 5255 style='mso-list:Ignore'>b.<span style='font:7.0pt "Times New Roman"'> 5256 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 5257 style='mso-fareast-font-family:"Times New Roman"'><a href="#Atoms" 5258 target="_self"><span style='color:windowtext;text-decoration:none;text-underline: 5259 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Shift 4745 5260 LMB<span style='font-weight:normal'> – on a row number selects all atoms 4746 from last selection to the selected row (or top is none previously selected).</span></span></span><span 4747 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 4748 none'><o:p></o:p></span></a></span></b></p> 4749 4750 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4751 auto;text-indent:-.25in;mso-list:l2 level2 lfo19'><b style='mso-bidi-font-weight: 4752 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a href="#Atoms" 4753 target="_self"><![if !supportLists]><span style='color:windowtext;font-weight: 4754 normal;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>c.<span 4755 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4756 style='color:windowtext;text-decoration:none;text-underline:none'><span 4757 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Ctrl 5261 from last selection to the selected row (or top is none previously selected).</span></span></span></a></span></b><span 5262 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5263 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 5264 5265 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5266 auto;text-indent:-.25in;mso-list:l3 level2 lfo19'><![if !supportLists]><span 5267 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5268 color:windowtext;text-decoration:none;text-underline:none'><span 5269 style='mso-list:Ignore'>c.<span style='font:7.0pt "Times New Roman"'> 5270 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 5271 style='mso-fareast-font-family:"Times New Roman"'><a href="#Atoms" 5272 target="_self"><span style='color:windowtext;text-decoration:none;text-underline: 5273 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Ctrl 4758 5274 LMB<span style='font-weight:normal'> – on a row number selects/deselects 4759 the atom.</span></span></span><span style='color:windowtext;font-weight:normal; 4760 text-decoration:none;text-underline:none'><o:p></o:p></span></a></span></b></p> 4761 4762 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 4763 auto;text-indent:-.25in;mso-list:l2 level2 lfo19'><b style='mso-bidi-font-weight: 4764 normal'><span style='mso-fareast-font-family:"Times New Roman"'><a href="#Atoms" 4765 target="_self"><![if !supportLists]><span style='color:windowtext;font-weight: 4766 normal;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>d.<span 4767 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4768 style='color:windowtext;text-decoration:none;text-underline:none'><span 4769 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Alt 5275 the atom.</span></span></span></a></span></b><span class=MsoHyperlink><span 5276 style='mso-fareast-font-family:"Times New Roman";color:windowtext;text-decoration: 5277 none;text-underline:none'><o:p></o:p></span></span></p> 5278 5279 <p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space: 5280 auto;text-indent:-.25in;mso-list:l3 level2 lfo19'><![if !supportLists]><span 5281 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5282 color:windowtext;text-decoration:none;text-underline:none'><span 5283 style='mso-list:Ignore'>d.<span style='font:7.0pt "Times New Roman"'> 5284 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><span 5285 style='mso-fareast-font-family:"Times New Roman"'><a href="#Atoms" 5286 target="_self"><span style='color:windowtext;text-decoration:none;text-underline: 5287 none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Alt 4770 5288 LMB<span style='font-weight:normal'> – on a row number selects that atom 4771 5289 for moving; the status line at bottom of window will show name of atom … … 4773 5291 target row for this atom; insertion will be before this row and the table will 4774 5292 be updated to show the change. NB: the </span>Draw Atoms<span style='font-weight: 4775 normal'> list is not updated by this change.</span></span></span>< span4776 style='color:windowtext;font-weight:normal;text-decoration:none;text-underline: 4777 none'><o:p></o:p></span></a></span></b></p>4778 4779 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l 2 level1 lfo19'><b4780 style='mso-bidi-font-weight:normal'><a href="#Atoms" target="_self"><![if !supportLists]><span 4781 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4782 normal;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>2.<span 4783 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4784 style='color:windowtext;text-decoration:none;text-underline:none'><span 4785 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Double5293 normal'> list is not updated by this change.</span></span></span></a></span></b><span 5294 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5295 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 5296 5297 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l3 level1 lfo19'><![if !supportLists]><span 5298 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5299 color:windowtext;text-decoration:none;text-underline:none'><span 5300 style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'> 5301 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><a 5302 href="#Atoms" target="_self"><span style='color:windowtext;text-decoration: 5303 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Double 4786 5304 left click a Type column heading<span style='font-weight:normal'>: a dialog box 4787 is shown that allows you to select all atoms with that type. </span></span></span>< span4788 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4789 normal;text-decoration:none;text-underline:none'><o:p></o:p></span></a></b></p>4790 4791 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l 2 level1 lfo19'><b4792 style='mso-bidi-font-weight:normal'><a href="#Atoms" target="_self"><![if !supportLists]><span 4793 style='mso-fareast-font-family:"Times New Roman";color:windowtext;font-weight: 4794 normal;text-decoration:none;text-underline:none'><span style='mso-list:Ignore'>3.<span 4795 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><span 4796 style='color:windowtext;text-decoration:none;text-underline:none'><span 4797 style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Double5305 is shown that allows you to select all atoms with that type. </span></span></span></a></b><span 5306 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5307 color:windowtext;text-decoration:none;text-underline:none'><o:p></o:p></span></span></p> 5308 5309 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l3 level1 lfo19'><![if !supportLists]><span 5310 class=MsoHyperlink><span style='mso-fareast-font-family:"Times New Roman"; 5311 color:windowtext;text-decoration:none;text-underline:none'><span 5312 style='mso-list:Ignore'>3.<span style='font:7.0pt "Times New Roman"'> 5313 </span></span></span></span><![endif]><b style='mso-bidi-font-weight:normal'><a 5314 href="#Atoms" target="_self"><span style='color:windowtext;text-decoration: 5315 none;text-underline:none'><span style='mso-field-code:" HYPERLINK \0022\0022 \\l \0022Atoms\0022 \\t \0022_self\0022 "'>Double 4798 5316 click a refine or I/A column heading<span style='mso-fareast-font-family:"Times New Roman"; 4799 5317 font-weight:normal'>: a dialog box will be shown with choices to be applied to 4800 every atom in the list.</span></span></span><span style='mso-fareast-font-family: 4801 "Times New Roman";color:windowtext;font-weight:normal;text-decoration:none; 4802 text-underline:none'><o:p></o:p></span></a></b></p> 4803 4804 <p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l2 level1 lfo19'><b 4805 style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'><a 4806 href="#Atoms" target="_self"><![if !supportLists]><span style='color:windowtext; 4807 font-weight:normal;text-decoration:none;text-underline:none'><span