Changeset 4580 for Tutorials

Oct 1, 2020 9:49:14 AM (3 years ago)

minor tutorial changes

2 edited


  • Tutorials/Magnetic-V/Magnetic-V.htm

    r4457 r4580  
    21812181Do <b style='mso-bidi-font-weight:normal'><span style='font-family:"Calibri",sans-serif;
    2183 minor-latin'>Cell Index/Refine/Load Cell</span></b> from the menu; a Phase
     2183minor-latin'>"Cell Index/Refine"/"Load Phase"</span></b> from the menu; a Phase
    21842184selection box will appear with only one choice (<b style='mso-bidi-font-weight:
    21852185normal'><span style='font-family:"Calibri",sans-serif;mso-ascii-theme-font:
    22482248<p class=MsoNormal>In this next step, you will be accessing the Bilbao
    2249 crystallographic server so you must be connected to the internet. In the Cell
     2249crystallographic server so you must be connected to the internet.
     2250First, reset to the initial I41/amd symmetry and cell parameters
     2251for the Mn3O4 phase,
     2252which can be done easily reusing the "Cell Index/Refine"/"Load Phase"
     2253menu item again. Then, in the Cell
    22502254Index/Refine menu select <b style='mso-bidi-font-weight:normal'><span
  • Tutorials/RigidBody/RigidBodyRef.html

    r4575 r4580  
    13421342<p class=MsoNormal align=right dir=RTL style='text-align:left;direction:rtl;
    1343 unicode-bidi:embed'><span dir=LTR style='mso-bidi-font-size:14.0pt'>Note that
    1344 ignoring H atom positioning, because the phenyl ring defines the relative
    1345 positions of the 6 component atoms and 3 atoms directly bonded to the ring, and
    1346 since bond distances and angles are well known, this molecule has only four
    1347 torsional degrees of freedom, where rotation is possible around the four bonds
     1343unicode-bidi:embed'><span dir=LTR style='mso-bidi-font-size:14.0pt'>
     1344Since the phenyl ring defines a plane for the 6 atoms in the ring, as well as the 3 atoms directly bonded to the ring, and
     1345since bond distances and angles are well known, the relative
     1346positions of these atoms are fixed. The positions for the
     1347remaining non-H atom can be determined with only 4 additional
     1348parameters, because rotation is possible around the four bonds
    13481349circled below. </span><span lang=HE style='mso-bidi-font-size:14.0pt;
    13491350font-family:"Times New Roman",serif;mso-ascii-font-family:Calibri;mso-ascii-theme-font:
    13861387irregular. Since this distorted structure is not physically reasonable, this
    13871388model is far from optimal. This well-fitting but <span class=GramE>poor quality</span>
    1388 model is due to use of too many parameters, which is sometimes called
     1389model arises because too many parameters were introduced,
     1390which is sometimes called
    13891391overfitting. In this tutorial, a better model will be developed using rigid
    1390 bodies for the two molecules. <o:p></o:p></span></p>
     1392bodies for the two molecules, providing a more chemically reasonable
     1393representation with fewer parameters -- and a better fit.
    13921396<p class=MsoNormal align=right dir=RTL style='text-align:left;direction:rtl;
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