Changeset 430 for trunk/help/gsasII.html


Ignore:
Timestamp:
Nov 30, 2011 5:02:08 PM (12 years ago)
Author:
vondreele
Message:

NB: There are a few stray print statements in this version
Some work on help stuff in GSASIIgrid.py
change default sum for constraints to 1.0
get data plots to include size & preferred orientation
modify plot toolbar - eliminate subplot button & add a Help button; doesn't do anything except recognize what plot it is from
Edited gsasII.html with Word - probably messed up all the bookmarks - but added a lot of text

File:
1 edited

Legend:

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  • trunk/help/gsasII.html

    r427 r430  
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    322<title>Help for GSAS-II</title>
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     25  <o:Author>Von Dreele</o:Author>
     26  <o:LastAuthor>Von Dreele</o:LastAuthor>
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     338  <w:LsdException Locked="false" Priority="32" SemiHidden="false"
     339   UnhideWhenUsed="false" QFormat="true" Name="Intense Reference"/>
     340  <w:LsdException Locked="false" Priority="33" SemiHidden="false"
     341   UnhideWhenUsed="false" QFormat="true" Name="Book Title"/>
     342  <w:LsdException Locked="false" Priority="37" Name="Bibliography"/>
     343  <w:LsdException Locked="false" Priority="39" QFormat="true" Name="TOC Heading"/>
     344 </w:LatentStyles>
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     354        mso-font-format:other;
     355        mso-font-pitch:variable;
     356        mso-font-signature:0 0 0 0 0 0;}
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     366        panose-1:2 11 6 4 3 5 4 4 2 4;
     367        mso-font-charset:0;
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     383h1
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     386        mso-style-qformat:yes;
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     396        mso-fareast-font-family:"Times New Roman";
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     398        font-weight:bold;}
     399h2
     400        {mso-style-priority:9;
     401        mso-style-unhide:no;
     402        mso-style-qformat:yes;
     403        mso-style-link:"Heading 2 Char";
     404        mso-margin-top-alt:auto;
     405        margin-right:0in;
     406        mso-margin-bottom-alt:auto;
     407        margin-left:0in;
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     409        mso-outline-level:2;
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     411        font-family:"Times New Roman","serif";
     412        mso-fareast-font-family:"Times New Roman";
     413        mso-fareast-theme-font:minor-fareast;
     414        font-weight:bold;}
     415h3
     416        {mso-style-priority:9;
     417        mso-style-unhide:no;
     418        mso-style-qformat:yes;
     419        mso-style-link:"Heading 3 Char";
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     421        margin-right:0in;
     422        mso-margin-bottom-alt:auto;
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     424        mso-pagination:widow-orphan;
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     426        font-size:13.5pt;
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     430        font-weight:bold;}
     431h4
     432        {mso-style-noshow:yes;
     433        mso-style-priority:9;
     434        mso-style-qformat:yes;
     435        mso-style-link:"Heading 4 Char";
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     441        margin-bottom:.0001pt;
     442        mso-pagination:widow-orphan lines-together;
     443        page-break-after:avoid;
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     449        mso-fareast-font-family:"Times New Roman";
     450        mso-fareast-theme-font:major-fareast;
     451        mso-hansi-font-family:Cambria;
     452        mso-hansi-theme-font:major-latin;
     453        mso-bidi-font-family:"Times New Roman";
     454        mso-bidi-theme-font:major-bidi;
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     456        mso-themecolor:accent1;
     457        font-weight:bold;
     458        font-style:italic;}
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     460        {mso-style-priority:99;
     461        color:blue;
     462        text-decoration:underline;
     463        text-underline:single;}
     464a:visited, span.MsoHyperlinkFollowed
     465        {mso-style-noshow:yes;
     466        mso-style-priority:99;
     467        color:purple;
     468        text-decoration:underline;
     469        text-underline:single;}
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     472        mso-style-priority:99;
     473        mso-margin-top-alt:auto;
     474        margin-right:0in;
     475        mso-margin-bottom-alt:auto;
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     480        mso-fareast-font-family:"Times New Roman";
     481        mso-fareast-theme-font:minor-fareast;}
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     483        {mso-style-noshow:yes;
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     485        mso-style-link:"HTML Preformatted Char";
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     491        font-family:"Courier New";
     492        mso-fareast-font-family:"Times New Roman";}
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     496        mso-style-link:"Balloon Text Char";
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     501        font-family:"Tahoma","sans-serif";
     502        mso-fareast-font-family:"Times New Roman";
     503        mso-fareast-theme-font:minor-fareast;}
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     506        mso-style-priority:99;
     507        mso-style-unhide:no;
     508        color:gray;}
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     512        mso-style-unhide:no;
     513        mso-style-qformat:yes;
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     516        margin-bottom:0in;
     517        margin-left:.5in;
     518        margin-bottom:.0001pt;
     519        mso-add-space:auto;
     520        mso-pagination:widow-orphan;
     521        font-size:12.0pt;
     522        font-family:"Times New Roman","serif";
     523        mso-fareast-font-family:"Times New Roman";
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     526        {mso-style-noshow:yes;
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     528        mso-style-unhide:no;
     529        mso-style-qformat:yes;
     530        mso-style-type:export-only;
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     534        margin-left:.5in;
     535        margin-bottom:.0001pt;
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     540        mso-fareast-font-family:"Times New Roman";
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     545        mso-style-unhide:no;
     546        mso-style-qformat:yes;
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     556        font-family:"Times New Roman","serif";
     557        mso-fareast-font-family:"Times New Roman";
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     563        mso-style-qformat:yes;
     564        mso-style-type:export-only;
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     567        margin-bottom:0in;
     568        margin-left:.5in;
     569        margin-bottom:.0001pt;
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     573        font-family:"Times New Roman","serif";
     574        mso-fareast-font-family:"Times New Roman";
     575        mso-fareast-theme-font:minor-fareast;}
     576span.Heading1Char
     577        {mso-style-name:"Heading 1 Char";
     578        mso-style-priority:9;
     579        mso-style-unhide:no;
     580        mso-style-locked:yes;
     581        mso-style-link:"Heading 1";
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     583        mso-bidi-font-size:14.0pt;
     584        font-family:"Cambria","serif";
     585        mso-ascii-font-family:Cambria;
     586        mso-ascii-theme-font:major-latin;
     587        mso-fareast-font-family:"Times New Roman";
     588        mso-fareast-theme-font:major-fareast;
     589        mso-hansi-font-family:Cambria;
     590        mso-hansi-theme-font:major-latin;
     591        mso-bidi-font-family:"Times New Roman";
     592        mso-bidi-theme-font:major-bidi;
     593        color:#365F91;
     594        mso-themecolor:accent1;
     595        mso-themeshade:191;
     596        font-weight:bold;}
     597span.Heading2Char
     598        {mso-style-name:"Heading 2 Char";
     599        mso-style-noshow:yes;
     600        mso-style-priority:9;
     601        mso-style-unhide:no;
     602        mso-style-locked:yes;
     603        mso-style-link:"Heading 2";
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     605        mso-bidi-font-size:13.0pt;
     606        font-family:"Cambria","serif";
     607        mso-ascii-font-family:Cambria;
     608        mso-ascii-theme-font:major-latin;
     609        mso-fareast-font-family:"Times New Roman";
     610        mso-fareast-theme-font:major-fareast;
     611        mso-hansi-font-family:Cambria;
     612        mso-hansi-theme-font:major-latin;
     613        mso-bidi-font-family:"Times New Roman";
     614        mso-bidi-theme-font:major-bidi;
     615        color:#4F81BD;
     616        mso-themecolor:accent1;
     617        font-weight:bold;}
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     620        mso-style-noshow:yes;
     621        mso-style-priority:9;
     622        mso-style-unhide:no;
     623        mso-style-locked:yes;
     624        mso-style-link:"Heading 3";
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     626        mso-bidi-font-size:12.0pt;
     627        font-family:"Cambria","serif";
     628        mso-ascii-font-family:Cambria;
     629        mso-ascii-theme-font:major-latin;
     630        mso-fareast-font-family:"Times New Roman";
     631        mso-fareast-theme-font:major-fareast;
     632        mso-hansi-font-family:Cambria;
     633        mso-hansi-theme-font:major-latin;
     634        mso-bidi-font-family:"Times New Roman";
     635        mso-bidi-theme-font:major-bidi;
     636        color:#4F81BD;
     637        mso-themecolor:accent1;
     638        font-weight:bold;}
     639span.Heading4Char
     640        {mso-style-name:"Heading 4 Char";
     641        mso-style-noshow:yes;
     642        mso-style-priority:9;
     643        mso-style-unhide:no;
     644        mso-style-locked:yes;
     645        mso-style-link:"Heading 4";
     646        mso-ansi-font-size:12.0pt;
     647        mso-bidi-font-size:12.0pt;
     648        font-family:"Cambria","serif";
     649        mso-ascii-font-family:Cambria;
     650        mso-ascii-theme-font:major-latin;
     651        mso-fareast-font-family:"Times New Roman";
     652        mso-fareast-theme-font:major-fareast;
     653        mso-hansi-font-family:Cambria;
     654        mso-hansi-theme-font:major-latin;
     655        mso-bidi-font-family:"Times New Roman";
     656        mso-bidi-theme-font:major-bidi;
     657        color:#4F81BD;
     658        mso-themecolor:accent1;
     659        font-weight:bold;
     660        font-style:italic;}
     661span.HTMLPreformattedChar
     662        {mso-style-name:"HTML Preformatted Char";
     663        mso-style-noshow:yes;
     664        mso-style-priority:99;
     665        mso-style-unhide:no;
     666        mso-style-locked:yes;
     667        mso-style-link:"HTML Preformatted";
     668        font-family:"Courier New";
     669        mso-ascii-font-family:"Courier New";
     670        mso-hansi-font-family:"Courier New";
     671        mso-bidi-font-family:"Courier New";}
     672span.BalloonTextChar
     673        {mso-style-name:"Balloon Text Char";
     674        mso-style-noshow:yes;
     675        mso-style-priority:99;
     676        mso-style-unhide:no;
     677        mso-style-locked:yes;
     678        mso-style-link:"Balloon Text";
     679        mso-ansi-font-size:8.0pt;
     680        mso-bidi-font-size:8.0pt;
     681        font-family:"Tahoma","sans-serif";
     682        mso-ascii-font-family:Tahoma;
     683        mso-fareast-font-family:"Times New Roman";
     684        mso-fareast-theme-font:minor-fareast;
     685        mso-hansi-font-family:Tahoma;
     686        mso-bidi-font-family:Tahoma;}
     687span.SpellE
     688        {mso-style-name:"";
     689        mso-spl-e:yes;}
     690span.GramE
     691        {mso-style-name:"";
     692        mso-gram-e:yes;}
     693.MsoChpDefault
     694        {mso-style-type:export-only;
     695        mso-default-props:yes;
     696        font-size:10.0pt;
     697        mso-ansi-font-size:10.0pt;
     698        mso-bidi-font-size:10.0pt;}
     699@page WordSection1
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     701        margin:1.0in 1.0in 1.0in 1.0in;
     702        mso-header-margin:.5in;
     703        mso-footer-margin:.5in;
     704        mso-paper-source:0;}
     705div.WordSection1
     706        {page:WordSection1;}
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     708 @list l0
     709        {mso-list-id:359092647;
     710        mso-list-type:hybrid;
     711        mso-list-template-ids:1777530928 67698703 67698713 67698715 67698703 67698713 67698715 67698703 67698713 67698715;}
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     713        {mso-level-tab-stop:none;
     714        mso-level-number-position:left;
     715        text-indent:-.25in;}
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     717        {mso-level-tab-stop:1.0in;
     718        mso-level-number-position:left;
     719        text-indent:-.25in;}
     720@list l0:level3
     721        {mso-level-tab-stop:1.5in;
     722        mso-level-number-position:left;
     723        text-indent:-.25in;}
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     725        {mso-level-tab-stop:2.0in;
     726        mso-level-number-position:left;
     727        text-indent:-.25in;}
     728@list l0:level5
     729        {mso-level-tab-stop:2.5in;
     730        mso-level-number-position:left;
     731        text-indent:-.25in;}
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     734        mso-level-number-position:left;
     735        text-indent:-.25in;}
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     738        mso-level-number-position:left;
     739        text-indent:-.25in;}
     740@list l0:level8
     741        {mso-level-tab-stop:4.0in;
     742        mso-level-number-position:left;
     743        text-indent:-.25in;}
     744@list l0:level9
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     746        mso-level-number-position:left;
     747        text-indent:-.25in;}
     748@list l1
     749        {mso-list-id:656106218;
     750        mso-list-type:hybrid;
     751        mso-list-template-ids:185874704 67698703 67698713 67698715 67698703 67698713 67698715 67698703 67698713 67698715;}
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     990ol
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     992ul
     993        {margin-bottom:0in;}
     994-->
     995</style>
     996<!--[if gte mso 10]>
     997<style>
     998 /* Style Definitions */
     999 table.MsoNormalTable
     1000        {mso-style-name:"Table Normal";
     1001        mso-tstyle-rowband-size:0;
     1002        mso-tstyle-colband-size:0;
     1003        mso-style-noshow:yes;
     1004        mso-style-priority:99;
     1005        mso-style-qformat:yes;
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     1012        font-family:"Times New Roman","serif";}
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     1014<![endif]--><!--[if gte mso 9]><xml>
     1015 <o:shapedefaults v:ext="edit" spidmax="6146"/>
     1016</xml><![endif]--><!--[if gte mso 9]><xml>
     1017 <o:shapelayout v:ext="edit">
     1018  <o:idmap v:ext="edit" data="1"/>
     1019 </o:shapelayout></xml><![endif]-->
    41020</head>
    51021
    6 <body>
    7 <P align="RIGHT"><IMG SRC="gsas2logo.png" alt="GSAS-II logo" align="RIGHT"></P>
    8 <h1>Help for GSAS-II</h1>
    9 
    10 This is where to find help on various GSAS-II windows.
    11 <A name="Data tree"><h2>GSAS-II data tree</h2></A>
    12 This is a hierarchical view of the data items in the current
    13 project. Clicking on any item in the window opens a view where
    14 information in that item can be viewed or edited. For example, the
    15 <a href="#Sample Parameters">"Sample Parameters"</A>
    16 item contains information about how data were
    17 collected, such as the sample temperature
    18 <a href="#Sample Parameters">(see below)</A>.
    19 
    20 
    21 <A name="Atoms"><h3>Atoms Control Window</H3></A>
    22 This window...
    23 <A name="Constraints"><h3>Constraints Control Window</H3></A>
    24 This window...
    25 <A name="Restraints"><h3>Restraints Control Window</H3></A>
    26 This window...
    27 <A name="Data"><h3>DiffractionData Control Window</H3></A>
    28 This window...
    29 <A name="Draw Atoms"><h3>Draw Atoms Control Window</H3></A>
    30 This window...
    31 <A name="Pawley"><h3>Pawley Control Window</H3></A>
    32 This window...
    33 <A name="Index Peaks"><h3>Index Peaks Control Window</H3></A>
    34 This window...
    35 <A name="Images"><h3>Images Control Window</H3></A>
    36 This window...
    37 <A name="Background"><h3>Background Control Window</H3></A>
    38 This window...
    39 <A name="Limits"><h3>Limits Control Window</H3></A>
    40 This window...
    41 <A name="Instrument Parameters"><h3>Instrument Parameters Control Window</H3></A>
    42 This window...
    43 <A name="Image Masks"><h3>Image Masks Control Window</H3></A>
    44 This window...
    45 <A name="Sample Parameters"><h3>Sample Parameters Control Window</H3></A>
    46 This window...
    47 <A name="Powder Peaks"><h3>Powder Peaks Control Window</H3></A>
    48 This window...
    49 <A name="Cell Indexing/Refine"><h3>Cell Indexing/Refine Control Window</H3></A>
    50 This window...
    51 <A name="Reflection List"><h3>Reflection List Control Window</H3></A>
    52 This window...
    53 <A name="Texture"><h3>Texture Control Window</H3></A>
    54 This window...
    55 <A name="PDF Controls"><h3>PDF Controls Control Window</H3></A>
    56 This window...
    57 
    58 <hr>
    59 <!-- hhmts start --> Last modified: Tue Nov 22 13:19:47 CST 2011 <!-- hhmts end -->
    60 </body> </html>
     1022<body lang=EN-US link=blue vlink=purple style='tab-interval:.5in'>
     1023
     1024<div class=WordSection1>
     1025
     1026<h1><!--[if gte vml 1]><v:shapetype id="_x0000_t75" coordsize="21600,21600"
     1027 o:spt="75" o:preferrelative="t" path="m@4@5l@4@11@9@11@9@5xe" filled="f"
     1028 stroked="f">
     1029 <v:stroke joinstyle="miter"/>
     1030 <v:formulas>
     1031  <v:f eqn="if lineDrawn pixelLineWidth 0"/>
     1032  <v:f eqn="sum @0 1 0"/>
     1033  <v:f eqn="sum 0 0 @1"/>
     1034  <v:f eqn="prod @2 1 2"/>
     1035  <v:f eqn="prod @3 21600 pixelWidth"/>
     1036  <v:f eqn="prod @3 21600 pixelHeight"/>
     1037  <v:f eqn="sum @0 0 1"/>
     1038  <v:f eqn="prod @6 1 2"/>
     1039  <v:f eqn="prod @7 21600 pixelWidth"/>
     1040  <v:f eqn="sum @8 21600 0"/>
     1041  <v:f eqn="prod @7 21600 pixelHeight"/>
     1042  <v:f eqn="sum @10 21600 0"/>
     1043 </v:formulas>
     1044 <v:path o:extrusionok="f" gradientshapeok="t" o:connecttype="rect"/>
     1045 <o:lock v:ext="edit" aspectratio="t"/>
     1046</v:shapetype><v:shape id="Picture_x0020_2" o:spid="_x0000_s1035" type="#_x0000_t75"
     1047 alt="GSAS-II logo" style='position:absolute;margin-left:56pt;margin-top:0;
     1048 width:96pt;height:96pt;z-index:1;visibility:visible;mso-wrap-style:square;
     1049 mso-wrap-distance-left:0;mso-wrap-distance-top:0;mso-wrap-distance-right:0;
     1050 mso-wrap-distance-bottom:0;mso-position-horizontal:right;
     1051 mso-position-horizontal-relative:text;mso-position-vertical:absolute;
     1052 mso-position-vertical-relative:line' o:allowoverlap="f">
     1053 <v:imagedata src="gsas2logo.png"/>
     1054 <w:wrap type="square" anchory="line"/>
     1055</v:shape><![endif]--><![if !vml]><img width=128 height=128 src=gsas2logo.png
     1056align=right alt="GSAS-II logo" v:shapes="Picture_x0020_2"><![endif]><span
     1057style='mso-fareast-font-family:"Times New Roman"'>Help for GSAS-II<o:p></o:p></span></h1>
     1058
     1059<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1060is where to find help on various GSAS-II windows and plots. <o:p></o:p></span></p>
     1061
     1062<h2><a name="Data_tree"><span style='mso-fareast-font-family:"Times New Roman"'>GSAS-II
     1063data tree</span></a><span style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h2>
     1064
     1065<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1066is a hierarchical view of the data items in your GSAS-II project (name.gpx). Clicking
     1067on any item in the window opens a view where information in that item can be
     1068viewed or edited. For example, the <a href="#Sample_Parameters">&quot;Sample
     1069Parameters&quot;</a> item contains information about how data were collected,
     1070such as the sample temperature <a href="#Sample_Parameters">(see below)</a>. <o:p></o:p></span></p>
     1071
     1072<h4><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h4>
     1073
     1074<p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l3 level1 lfo2'><![if !supportLists]><span
     1075style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span
     1076style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Menu
     1077&#8216;<b style='mso-bidi-font-weight:normal'>File</b>&#8217; &#8211;</p>
     1078
     1079<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1080auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1081style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span
     1082style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1083style='mso-bidi-font-weight:normal'>Open project&#8230;</b> - Open a previously
     1084saved GSAS-II project file (name.gpx). If you currently have a project file
     1085open, you are asked if it is OK to over write it; Cancel will cancel the
     1086process.</p>
     1087
     1088<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1089auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1090style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span
     1091style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1092style='mso-bidi-font-weight:normal'>Save project</b> &#8211; Save the current
     1093project. If a file name is shown after &#8216;Loaded <span class=GramE>Data:&#8217;<span
     1094style='mso-fareast-font-family:"Times New Roman"'>,</span></span><span
     1095style='mso-fareast-font-family:"Times New Roman"'> it will be saved there.
     1096Otherwise, you will be prompted for a new name in a file dialog (you may change
     1097directory as well). If the file exists, you will be asked if it OK to
     1098overwrite.</span></p>
     1099
     1100<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1101auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1102style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span
     1103style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1104style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Save
     1105As&#8230;</span></b><span style='mso-fareast-font-family:"Times New Roman"'> -
     1106Save the current project to a new file. A file dialog will be shown to enter
     1107the name (and change directory if desired). If the file exists, you will be
     1108asked if it OK to overwrite.</span></p>
     1109
     1110<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1111auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1112style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span
     1113style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1114style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Close
     1115project</span></b><span style='mso-fareast-font-family:"Times New Roman"'>
     1116&#8211; Close the current project; you will be asked if you want to save it
     1117first.</span></p>
     1118
     1119<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1120auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1121style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>e.<span
     1122style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1123style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Exit</span></b><span
     1124style='mso-fareast-font-family:"Times New Roman"'> &#8211; Exit the GSAS-II
     1125program; if there is a current project you will be asked if you want to save it
     1126first. Pressing the red X in the upper right (Windows) also exits (no save
     1127option) GSAS-II; useful for escaping from GSAS-II if needed.</span></p>
     1128
     1129<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l3 level1 lfo2'><![if !supportLists]><span
     1130style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span
     1131style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Menu
     1132&#8216;<b style='mso-bidi-font-weight:normal'>Data</b>&#8217; &#8211; </p>
     1133
     1134<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1135auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1136style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span
     1137style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1138style='mso-bidi-font-weight:normal'>Read powder data&#8230;</b> - Read in
     1139powder diffraction patterns (multiple patterns can be selected). GSAS-II can
     1140read most of the old GSAS powder format files with the position in <span
     1141class=SpellE>centidegrees</span> 2-theta. It can also read &#8220;<span
     1142class=SpellE>xye</span>&#8221; format files used by <span class=SpellE>topas</span>
     1143where the position is in degrees 2-theta. As each file is read, an old GSAS
     1144style &#8220;instrument parameter file&#8221; is searched for; if not found a <span
     1145class=SpellE>CuK</span><span style='font-family:Symbol'>a</span> laboratory
     1146data set is assumed. </p>
     1147
     1148<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1149auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1150style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span
     1151style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1152style='mso-bidi-font-weight:normal'>Read image data&#8230;</b> - </p>
     1153
     1154<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1155auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1156style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span
     1157style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1158style='mso-bidi-font-weight:normal'>Read Powder Pattern Peaks&#8230;</b> - </p>
     1159
     1160<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1161auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1162style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span
     1163style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1164style='mso-bidi-font-weight:normal'>Read single crystal data&#8230;</b> - </p>
     1165
     1166<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1167auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1168style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>e.<span
     1169style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1170style='mso-bidi-font-weight:normal'>Sum powder data</b> - </p>
     1171
     1172<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1173auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1174style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>f.<span
     1175style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1176style='mso-bidi-font-weight:normal'>Sum image data</b> - </p>
     1177
     1178<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1179auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1180style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>g.<span
     1181style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1182style='mso-bidi-font-weight:normal'>Add phase</b> - </p>
     1183
     1184<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1185auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1186style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>h.<span
     1187style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1188style='mso-bidi-font-weight:normal'>Delete phase</b> - </p>
     1189
     1190<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1191auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1192style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>i.<span
     1193style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     1194</span></span></span><![endif]><b style='mso-bidi-font-weight:normal'>Rename
     1195data</b> - </p>
     1196
     1197<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1198auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1199style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>j.<span
     1200style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
     1201</span></span></span><![endif]><b style='mso-bidi-font-weight:normal'>Delete
     1202data</b> - </p>
     1203
     1204<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l3 level1 lfo2'><![if !supportLists]><span
     1205style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span
     1206style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Menu
     1207&#8216;<b style='mso-bidi-font-weight:normal'>Calculate</b>&#8217; &#8211; </p>
     1208
     1209<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1210auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1211style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span
     1212style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1213style='mso-bidi-font-weight:normal'>Make new PDFs</b> - </p>
     1214
     1215<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1216auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1217style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span
     1218style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1219style='mso-bidi-font-weight:normal'>View LS <span class=SpellE>parms</span></b>
     1220- </p>
     1221
     1222<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1223auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1224style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span
     1225style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1226style='mso-bidi-font-weight:normal'>Refine</b> - </p>
     1227
     1228<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1229auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1230style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span
     1231style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1232style='mso-bidi-font-weight:normal'>Sequential refine</b> - </p>
     1233
     1234<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1235auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1236style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>e.<span
     1237style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1238style='mso-bidi-font-weight:normal'>Solve</b> - </p>
     1239
     1240<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l3 level1 lfo2'><![if !supportLists]><span
     1241style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>4.<span
     1242style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Menu
     1243&#8216;<b style='mso-bidi-font-weight:normal'>Import</b>&#8217; &#8211; </p>
     1244
     1245<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1246auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1247style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span
     1248style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1249style='mso-bidi-font-weight:normal'>Import GSAS Exp phase&#8230;</b> - </p>
     1250
     1251<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1252auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1253style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span
     1254style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1255style='mso-bidi-font-weight:normal'>Import PDB phase&#8230;</b> - </p>
     1256
     1257<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1258auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1259style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span
     1260style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1261style='mso-bidi-font-weight:normal'>Import CIF phase&#8230;</b> - </p>
     1262
     1263<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1264auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1265style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span
     1266style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1267style='mso-bidi-font-weight:normal'>Import HKLs&#8230;</b> - </p>
     1268
     1269<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l3 level1 lfo2'><![if !supportLists]><span
     1270style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>5.<span
     1271style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Menu
     1272&#8216;<b style='mso-bidi-font-weight:normal'>Export</b>&#8217; &#8211;</p>
     1273
     1274<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1275auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1276style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span
     1277style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1278style='mso-bidi-font-weight:normal'>Export Powder Patterns&#8230;</b> - </p>
     1279
     1280<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1281auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1282style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span
     1283style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1284style='mso-bidi-font-weight:normal'>Export All Peak Lists&#8230;</b> - </p>
     1285
     1286<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1287auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1288style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span
     1289style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1290style='mso-bidi-font-weight:normal'>Export HKLs&#8230;</b> - </p>
     1291
     1292<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1293auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1294style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span
     1295style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1296style='mso-bidi-font-weight:normal'>Export PDF&#8230;</b> - </p>
     1297
     1298<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1299auto;text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1300style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>e.<span
     1301style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1302style='mso-bidi-font-weight:normal'>Export Phase&#8230;</b> - </p>
     1303
     1304<p class=MsoListParagraphCxSpLast style='margin-left:1.0in;mso-add-space:auto;
     1305text-indent:-.25in;mso-list:l3 level2 lfo2'><![if !supportLists]><span
     1306style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>f.<span
     1307style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1308style='mso-bidi-font-weight:normal'>Export CIF&#8230;</b> - </p>
     1309
     1310<h3><a name=Notebook><span style='mso-fareast-font-family:"Times New Roman"'>Notebook</span></a><span
     1311style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1312
     1313<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1314window provides a place for you to enter whatever text commentary you wish.
     1315Each time you enter this window, a date/time entry is provided for you. A
     1316possibly useful technique is to select a portion of the console window after a
     1317refinement completes (it will contain refinement results with residuals, new
     1318values &amp; <span class=SpellE>esds</span>) and paste it into this Notebook
     1319window so it becomes a part of your project file.<o:p></o:p></span></p>
     1320
     1321<h3><a name=Controls><span style='mso-fareast-font-family:"Times New Roman"'>Controls</span></a><span
     1322style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1323
     1324<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1325window provides the main controls for the major calculations in GSAS-II. At
     1326present only Refinement Controls are presented.<o:p></o:p></span></p>
     1327
     1328<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>The
     1329main refinement tools are the <span class=SpellE><span class=GramE>fortran</span></span>
     1330MINPACK <span class=SpellE>lmdif</span> and <span class=SpellE>lmder</span>
     1331algorithms wrapped in python as provided in the <span class=SpellE>Scipy</span>
     1332package. Their purpose is to </span>minimize the sum of the squares of M<span
     1333style='mso-fareast-font-family:"Times New Roman"'> nonlinear functions in N
     1334variables by a modification of the <span class=SpellE>Levenberg</span>-Marquardt
     1335algorithm as written by </span>Burton S. <span class=SpellE>Garbow</span>,
     1336Kenneth E. <span class=SpellE>Hillstrom</span>, <span class=GramE>Jorge</span>
     1337J. <span class=GramE>More (Argonne National Laboratory, 1980).</span></p>
     1338
     1339<h4><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h4>
     1340
     1341<p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l4 level1 lfo4'><![if !supportLists]><span
     1342style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span
     1343style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1344style='mso-fareast-font-family:"Times New Roman"'>Select whether the refinement
     1345uses &#8216;analytic&#8217; or &#8216;numeric&#8217; derivatives. The latter is
     1346slower and perhaps a bit less accurate, but may be needed if the analytic
     1347functions are not fully developed. Generally use &#8216;analytic&#8217; for
     1348routine work.<o:p></o:p></span></p>
     1349
     1350<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l4 level1 lfo4'><![if !supportLists]><span
     1351style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span
     1352style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1353style='mso-fareast-font-family:"Times New Roman"'>Select &#8216;Min
     1354delta-M/M&#8217; for convergence; the refinement will stop when the change in
     1355the minimization function is less than this value. Set Min delta-M/M = 1.0 to
     1356force just a single cycle to be performed. A value less than 10<sup>-4</sup>
     1357(the default) generally gives no better result. The allowed range is 10<sup>-9</sup>
     1358to 1.0.<o:p></o:p></span></p>
     1359
     1360<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l4 level1 lfo4'><![if !supportLists]><span
     1361style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span
     1362style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1363style='mso-fareast-font-family:"Times New Roman"'>Select &#8216;Initial shift
     1364factor&#8217; for the first cycle of refinement. This value is modified by the
     1365least squares routine. The allowed range is 10<sup>-5</sup> to 100. Smaller
     1366values may be needed if your initial <span class=GramE>refinement</span> trials
     1367immediately diverge, however make sure your starting parameter values are
     1368&#8216;reasonable&#8217;. The selected default (=1.0) normally gives good
     1369performance.<o:p></o:p></span></p>
     1370
     1371<p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l4 level1 lfo4'><![if !supportLists]><span
     1372style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>4.<span
     1373style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1374style='mso-fareast-font-family:"Times New Roman"'>Select data for sequential
     1375refinement; the data sets may be done in &#8216;reverse order&#8217;. <o:p></o:p></span></p>
     1376
     1377<h3><span style='mso-fareast-font-family:"Times New Roman"'>Covariance<o:p></o:p></span></h3>
     1378
     1379<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1380window is blank; the GSASII Plots window &#8216;<a href="#Covariance">Covariance&#8217;</a>
     1381shows a graphical representation of the variance-covariance matrix <o:p></o:p></span></p>
     1382
     1383<h3><a name=Constraints><span style='mso-fareast-font-family:"Times New Roman"'>Constraints<o:p></o:p></span></a></h3>
     1384
     1385<span style='mso-bookmark:Constraints'></span>
     1386
     1387<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1388window shows the constraints to be used in a refinement. It is organized into
     1389three tabbed pages. &#8216;Phase constraints&#8217; contain those involving
     1390parameters that describe aspects of the crystalline phases to be used in the
     1391refinement (e.g. atom coordinates, thermal motion and site fraction
     1392parameters). &#8216;Histogram/Phase constraints&#8217; are those which describe
     1393aspects of the pattern that depend on both the phase and the data set used in
     1394the refinement (e.g. </span><span style='font-family:Symbol;mso-fareast-font-family:
     1395"Times New Roman"'>m</span><span style='mso-fareast-font-family:"Times New Roman"'>strain
     1396and crystallite size parameters). &#8216;Histogram constraints&#8217; are those
     1397that depend only on the data set (e.g. profile coefficients U<span class=GramE>,V,W,X</span>
     1398and Y).<o:p></o:p></span></p>
     1399
     1400<h4><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h4>
     1401
     1402<p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l5 level1 lfo6'><![if !supportLists]><span
     1403style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span
     1404style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1405style='mso-fareast-font-family:"Times New Roman"'>Select the tab for the parameter
     1406types you wish to constrain. Each will have the same possibilities in the
     1407&#8216;Edit menu.<o:p></o:p></span></p>
     1408
     1409<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l5 level1 lfo6'><![if !supportLists]><span
     1410style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span
     1411style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1412style='mso-fareast-font-family:"Times New Roman"'>Menu &#8216;<b
     1413style='mso-bidi-font-weight:normal'>Edit</b>&#8217; &#8211; <o:p></o:p></span></p>
     1414
     1415<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1416auto;text-indent:-.25in;mso-list:l5 level2 lfo6'><![if !supportLists]><span
     1417style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>a.<span
     1418style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1419class=GramE><b style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:
     1420"Times New Roman"'>Add</span></b></span><b style='mso-bidi-font-weight:normal'><span
     1421style='mso-fareast-font-family:"Times New Roman"'> Hold</span></b><span
     1422style='mso-fareast-font-family:"Times New Roman"'> &#8211; select a parameter
     1423that you wish to remain fixed although other parameters of the same type may be
     1424selected as a group for refinement. For example, if the space group for a phase
     1425has a polar axis (e.g. the b-axis in P2<sub>1</sub>), then one atom y-parameter
     1426is arbitrary and should be selected for a Hold to keep the structure from
     1427drifting up or down the y-axis during refinement. If selected, a dialog box
     1428will appear showing the list of available parameters; select one and then OK to
     1429implement it, Cancel will cancel the operation. The held parameter will be
     1430shown in the constraint window with the keyword &#8216;FIXED&#8217;. A Delete
     1431button can be used to remove it.<o:p></o:p></span></p>
     1432
     1433<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1434auto;text-indent:-.25in;mso-list:l5 level2 lfo6'><![if !supportLists]><span
     1435style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>b.<span
     1436style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1437style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Add
     1438equivalence</span></b><span style='mso-fareast-font-family:"Times New Roman"'>
     1439&#8211; select a list of parameters that should have the same value (possibly
     1440with a non-unitary multiplier for some). Examples are a list of atoms with the
     1441same thermal motion <span class=SpellE>Uiso</span>, sets of profile
     1442coefficients U<span class=GramE>,V,W</span> across multiple data sets. If
     1443selected, a dialog box will appear with a list of the available parameters.
     1444Select one and press OK; a second dialog box will appear with only those
     1445parameters that can be made equivalent to the first one. Choose those and press
     1446OK. Cancel in either dialog will cancel the operation. The equivalenced
     1447parameters will show as an equation of the form M<sub>1</sub>*P<sub>1</sub>+M<sub>2</sub>*P<sub>2</sub>=0;
     1448usually M1=1.0 and M2=-1.0, but can be changed via the &#8216;Edit&#8217;
     1449button. The keyword &#8216;EQUIV&#8217; marks it as <span class=GramE>an
     1450equivalence</span>. A Delete button can be used to remove it.<o:p></o:p></span></p>
     1451
     1452<p class=MsoListParagraphCxSpMiddle style='margin-left:1.0in;mso-add-space:
     1453auto;text-indent:-.25in;mso-list:l5 level2 lfo6'><![if !supportLists]><span
     1454style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>c.<span
     1455style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1456style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Add
     1457constraint</span></b><span style='mso-fareast-font-family:"Times New Roman"'>
     1458&#8211; select a list of parameters whose sum (with possible non-unitary
     1459multipliers) is fixed. For example, the sum of site fractions for atoms on the
     1460same site could be fixed to unity. If selected, a dialog box will appear with a
     1461list of the available parameters. Select one and press OK; a second dialog box
     1462will appear with only those parameters that can be used in a constraint with
     1463the first one. Choose those and press OK. Cancel in either dialog will cancel
     1464the operation. The equivalenced parameters will show as an equation of the form
     1465M<sub>1</sub>*P<sub>1</sub>+M<sub>2</sub>*P<sub>2</sub>+&#8230;=C; the
     1466multipliers M1, <span class=GramE>M2, &#8230;</span> and C can be changed via
     1467the &#8216;Edit&#8217; button. The keyword &#8216;CONSTR&#8217; marks it as a
     1468constraint. A Delete button can be used to remove it.<o:p></o:p></span></p>
     1469
     1470<p class=MsoListParagraphCxSpLast style='margin-left:1.0in;mso-add-space:auto;
     1471text-indent:-.25in;mso-list:l5 level2 lfo6'><![if !supportLists]><span
     1472style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>d.<span
     1473style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><b
     1474style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:"Times New Roman"'>Add
     1475function</span></b><span style='mso-fareast-font-family:"Times New Roman"'>
     1476&#8211; this is very similar the &#8220;Add constraint&#8221; type except that
     1477the result of the sum can be varied in the refinement. The keyword
     1478&#8216;FUNCT&#8217; marks it as a function; the &#8216;Refine?&#8217; box
     1479indicates your choice to refine the result of the sum. A Delete button can be
     1480used to remove it.<o:p></o:p></span></p>
     1481
     1482<h3><a name=Restraints><span style='mso-fareast-font-family:"Times New Roman"'>Restraints</span></a><span
     1483style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1484
     1485<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1486window... <o:p></o:p></span></p>
     1487
     1488<h3><a name=Limits><span style='mso-fareast-font-family:"Times New Roman"'>Limits</span></a><span
     1489style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1490
     1491<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1492window shows the limits in position to be used in any fitting for this powder
     1493pattern. The &#8216;original&#8217; values are obtained from the minimum &amp;
     1494maximum values in the powder pattern. You can modify &#8216;changed&#8217; as
     1495needed.<o:p></o:p></span></p>
     1496
     1497<h4><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h4>
     1498
     1499<p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l0 level1 lfo8'><![if !supportLists]><span
     1500style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span
     1501style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1502style='mso-fareast-font-family:"Times New Roman"'>Menu &#8216;<b
     1503style='mso-bidi-font-weight:normal'>File</b>&#8217; &#8211; <b
     1504style='mso-bidi-font-weight:normal'>Copy</b> - this copies the limits shown to
     1505other selected powder patterns. If used, a dialog box (Copy Limits) will appear
     1506showing the list of available powder patterns, you can copy the limits to any
     1507or all of them; select &#8216;All&#8217; to copy them to all patterns. Then
     1508select &#8216;OK&#8217; to do the copy; &#8216;Cancel&#8217; to cancel the
     1509operation.<o:p></o:p></span></p>
     1510
     1511<p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l0 level1 lfo8'><![if !supportLists]><span
     1512style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span
     1513style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1514style='mso-fareast-font-family:"Times New Roman"'>You can change <span
     1515class=SpellE>Tmin</span> and <span class=SpellE>Tmax</span> in the
     1516&#8216;changed&#8217; row as needed. Use the mouse to select the value to be
     1517changed (the background on the box will be blue or have a black border or a
     1518vertical bar will appear in the value), then enter the new value and press
     1519Enter or click the mouse elsewhere in the Background window. This will set the
     1520new value.<o:p></o:p></span></p>
     1521
     1522<h3><a name=Background><span style='mso-fareast-font-family:"Times New Roman"'>Background</span></a><span
     1523style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1524
     1525<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1526window shows the choice of background function and coefficients to be used in
     1527fitting this powder pattern.<o:p></o:p></span></p>
     1528
     1529<h4><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h4>
     1530
     1531<p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l6 level1 lfo10'><![if !supportLists]><span
     1532style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span
     1533style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1534style='mso-fareast-font-family:"Times New Roman"'>Menu &#8216;<b
     1535style='mso-bidi-font-weight:normal'>File</b>&#8217; &#8211; <b
     1536style='mso-bidi-font-weight:normal'>Copy</b> &#8211; this copies the background
     1537parameters shown to other selected powder patterns. If used, a dialog box (Copy
     1538Parameters) will appear showing the list of available powder patterns, you can
     1539copy the background parameters to any or all of them; select &#8216;All&#8217;
     1540to copy them to all patterns. Then select &#8216;OK&#8217; to do the copy;
     1541&#8216;Cancel&#8217; to cancel the operation.<o:p></o:p></span></p>
     1542
     1543<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l6 level1 lfo10'><![if !supportLists]><span
     1544style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span
     1545style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1546style='mso-fareast-font-family:"Times New Roman"'>You can select a different
     1547Background function from the pull down tab.<o:p></o:p></span></p>
     1548
     1549<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l6 level1 lfo10'><![if !supportLists]><span
     1550style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>3.<span
     1551style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1552style='mso-fareast-font-family:"Times New Roman"'>You can choose to refine/not
     1553refine the background coefficients.<o:p></o:p></span></p>
     1554
     1555<p class=MsoListParagraphCxSpMiddle style='text-indent:-.25in;mso-list:l6 level1 lfo10'><![if !supportLists]><span
     1556style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>4.<span
     1557style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1558style='mso-fareast-font-family:"Times New Roman"'>You can select the number of
     1559background coefficients to be used (1-36).<o:p></o:p></span></p>
     1560
     1561<p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l6 level1 lfo10'><![if !supportLists]><span
     1562style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>5.<span
     1563style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1564style='mso-fareast-font-family:"Times New Roman"'>You can change individual
     1565background coefficient values. Enter the value then press Enter or click the
     1566mouse elsewhere in the Background window. This will set the new value.<o:p></o:p></span></p>
     1567
     1568<h3><a name="Instrument_Parameters"><span style='mso-fareast-font-family:"Times New Roman"'>Instrument
     1569Parameters</span></a><span style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1570
     1571<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1572window... <o:p></o:p></span></p>
     1573
     1574<h3><a name="Sample_Parameters"><span style='mso-fareast-font-family:"Times New Roman"'>Sample
     1575Parameters</span></a><span style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1576
     1577<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1578window... <o:p></o:p></span></p>
     1579
     1580<h3><a name="Powder_Peaks"></a><a name="Peak_List"><span style='mso-bookmark:
     1581Powder_Peaks'><span style='mso-fareast-font-family:"Times New Roman"'>Peak List</span></span></a><span
     1582style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1583
     1584<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1585window shows the list of peaks that will be used by the peak fitting refinement.
     1586It is filled by picking peaks in the powder pattern displayed in the GSASII
     1587Plots window as a sequence of &#8216;+&#8217; marks. See <a
     1588href="#Powder_Patterns">Powder Patterns</a> below for details for what can be
     1589done on this plot.<o:p></o:p></span></p>
     1590
     1591<h3><a name="Index_Peaks"><span style='mso-fareast-font-family:"Times New Roman"'>Index
     1592Peak List</span></a><span style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1593
     1594<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1595window shows the list of peaks that will be used for indexing (see </span><a
     1596href="#Unit_Cells_List"><span style='mso-fareast-font-family:"Times New Roman"'>Unit
     1597Cells List</span></a><span style='mso-fareast-font-family:"Times New Roman"'>).
     1598It must be filled before indexing can proceed. When indexing is completed, this
     1599display will show the resulting <span class=SpellE>hkl</span> values for every
     1600indexed reflection along with the calculated d-spacing (&#8216;d-<span
     1601class=SpellE>calc</span>&#8217;) for the selected unit cell in </span><a
     1602href="#Unit_Cells_List"><span style='mso-fareast-font-family:"Times New Roman"'>Unit
     1603Cells List</span></a><span style='mso-fareast-font-family:"Times New Roman"'>.<o:p></o:p></span></p>
     1604
     1605<h4><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h4>
     1606
     1607<p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l2 level1 lfo12'><![if !supportLists]><span
     1608style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span
     1609style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1610style='mso-fareast-font-family:"Times New Roman"'>Menu &#8216;<b
     1611style='mso-bidi-font-weight:normal'>Operations</b>&#8217; &#8211; <b
     1612style='mso-bidi-font-weight:normal'>Load/Reload</b> &#8211; loads the peak
     1613positions &amp; intensities from the </span><a href="#Peak_List"><span
     1614style='mso-fareast-font-family:"Times New Roman"'>Peak List</span></a><span
     1615style='mso-fareast-font-family:"Times New Roman"'> to make them available for
     1616the indexing routine. The d-<span class=SpellE>obs</span> is obtained from
     1617Bragg&#8217;s Law after applying the Zero correction shown on the </span><a
     1618href="#Instrument_Parameters"><span style='mso-fareast-font-family:"Times New Roman"'>Instrument
     1619Parameters</span></a><span style='mso-fareast-font-family:"Times New Roman"'>
     1620table to the position shown here.<o:p></o:p></span></p>
     1621
     1622<p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l2 level1 lfo12'><![if !supportLists]><span
     1623style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span
     1624style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1625style='mso-fareast-font-family:"Times New Roman"'>You may deselect individual
     1626peaks from indexing by <span class=SpellE>unchecking</span> the corresponding
     1627&#8216;use&#8217; box.<o:p></o:p></span></p>
     1628
     1629<h3><a name="Cell_Indexing_Refine"><span style='mso-fareast-font-family:"Times New Roman"'>Unit
     1630Cells List</span></a><span style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1631
     1632<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1633window... <o:p></o:p></span></p>
     1634
     1635<h3><a name="Reflection_List"><span style='mso-fareast-font-family:"Times New Roman"'>Reflection
     1636List</span></a><span style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1637
     1638<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1639window... <o:p></o:p></span></p>
     1640
     1641<h3><span style='mso-fareast-font-family:"Times New Roman"'>Texture Control
     1642Window<o:p></o:p></span></h3>
     1643
     1644<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1645window... <o:p></o:p></span></p>
     1646
     1647<h3><span style='mso-fareast-font-family:"Times New Roman"'>Image Masks<o:p></o:p></span></h3>
     1648
     1649<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1650window... <o:p></o:p></span></p>
     1651
     1652<h3><span style='mso-fareast-font-family:"Times New Roman"'>Atoms Control
     1653Window<o:p></o:p></span></h3>
     1654
     1655<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1656window... <o:p></o:p></span></p>
     1657
     1658<h3><span style='mso-fareast-font-family:"Times New Roman"'>Diffraction Data
     1659Control Window<o:p></o:p></span></h3>
     1660
     1661<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1662window... <o:p></o:p></span></p>
     1663
     1664<h3><span style='mso-fareast-font-family:"Times New Roman"'>Draw Atoms Control
     1665Window<o:p></o:p></span></h3>
     1666
     1667<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1668window... <o:p></o:p></span></p>
     1669
     1670<h3><span style='mso-fareast-font-family:"Times New Roman"'>Pawley Control
     1671Window<o:p></o:p></span></h3>
     1672
     1673<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1674window... <o:p></o:p></span></p>
     1675
     1676<h3><a name=Images><span style='mso-fareast-font-family:"Times New Roman"'>Images
     1677Control<o:p></o:p></span></a></h3>
     1678
     1679<span style='mso-bookmark:Images'></span>
     1680
     1681<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1682window... <o:p></o:p></span></p>
     1683
     1684<h3><span style='mso-fareast-font-family:"Times New Roman"'>PDF Controls
     1685Control Window<o:p></o:p></span></h3>
     1686
     1687<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1688window... <o:p></o:p></span></p>
     1689
     1690<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><o:p>&nbsp;</o:p></span></p>
     1691
     1692<h2><a name=Plots><span style='mso-fareast-font-family:"Times New Roman"'>GSASII
     1693Plots</span></a><span style='mso-bookmark:Plots'></span><span style='mso-fareast-font-family:
     1694"Times New Roman";font-weight:normal'> </span><span style='mso-fareast-font-family:
     1695"Times New Roman"'><o:p></o:p></span></h2>
     1696
     1697<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>This
     1698window presents all the graphical material as a multipage tabbed set of plots
     1699utilizing the <span class=SpellE>matplotlib</span> python package. Each page
     1700has a tool bar (at bottom in Windows) with the controls<o:p></o:p></span></p>
     1701
     1702<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman";
     1703mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_3" o:spid="_x0000_i1026"
     1704 type="#_x0000_t75" style='width:168.75pt;height:23.25pt;visibility:visible;
     1705 mso-wrap-style:square'>
     1706 <v:imagedata src="gsasII_files/image001.png" o:title="" croptop="44118f"
     1707  cropbottom="18773f" cropleft="22405f" cropright="32288f"/>
     1708</v:shape><![endif]--><![if !vml]><img border=0 width=225 height=31
     1709src="gsasII_files/image002.jpg" v:shapes="Picture_x0020_3"><![endif]></span><span
     1710style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></p>
     1711
     1712<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>These
     1713are Home, Back, Forward, Pan, Zoom, Save and Help, respectively. The Pan option
     1714allows you to control panning across the plot (press left mouse button) and
     1715zooming (press right mouse button), the Zoom option allows you to select a
     1716portion of the plot (press right mouse button &amp; drag for zoom box) for the
     1717next plot. The Save allows you to save the currently displayed plot in one of
     1718several graphical formats suitable for printing or insertion in a document. The
     1719Help icon is for access to this GSASII help.<o:p></o:p></span></p>
     1720
     1721<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>Below
     1722the toolbar may be a status bar that on the left may show either an instruction
     1723for a keyed input or a pull down selection of keyed input; on the right may be
     1724displayed position dependent information that is updated as the mouse is moved
     1725over the plot region.<o:p></o:p></span></p>
     1726
     1727<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><o:p>&nbsp;</o:p></span></p>
     1728
     1729<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>The
     1730specific types of plots that are pages in the GSASII Plots windows are next.<o:p></o:p></span></p>
     1731
     1732<h3><a name="Powder_Patterns"><span style='mso-fareast-font-family:"Times New Roman"'>Powder
     1733Patterns</span></a><span style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1734
     1735<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>The
     1736powder patterns that are part of your project are shown on this page. They can
     1737be displayed as a stack of powder patterns, just a single pattern or as a
     1738contour image of the peak intensities. What can be done here will depend on
     1739which is displayed and on which item in the GSAS-II data tree you have
     1740selected.<o:p></o:p></span></p>
     1741
     1742<h3><a name=Covariance><span style='mso-fareast-font-family:"Times New Roman"'>Covariance</span></a><span
     1743style='mso-fareast-font-family:"Times New Roman"'><o:p></o:p></span></h3>
     1744
     1745<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'>The
     1746variance-covariance matrix as a color coded array is shown on this page. The
     1747color bar to the right shows the range of <span class=SpellE>covariances</span>
     1748(-1 to 1) and corresponding colors. The parameter names are to the right and
     1749the parameter numbers are below the plot.<o:p></o:p></span></p>
     1750
     1751<h4><span style='mso-fareast-font-family:"Times New Roman"'>What can I do here?<o:p></o:p></span></h4>
     1752
     1753<p class=MsoListParagraphCxSpFirst style='text-indent:-.25in;mso-list:l1 level1 lfo14'><![if !supportLists]><span
     1754style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>1.<span
     1755style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Move
     1756the mouse cursor across the plot. If on a diagonal cell, the parameter name,
     1757value and <span class=SpellE>esd</span> is shown both as a tool tip and in the
     1758right hand portion of the status bar. If the cursor is off the diagonal, the
     1759two parameter names and their covariance are shown in the tool tip and the
     1760status bar.</p>
     1761
     1762<p class=MsoListParagraphCxSpLast style='text-indent:-.25in;mso-list:l1 level1 lfo14'><![if !supportLists]><span
     1763style='mso-fareast-font-family:"Times New Roman"'><span style='mso-list:Ignore'>2.<span
     1764style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span
     1765class=GramE>Type &#8216;s&#8217;</span> &#8211; A color scheme selection dialog
     1766is shown. Select a color scheme and press <span class=GramE>OK,</span> the new
     1767color scheme will be plotted. The default is &#8216;<span class=SpellE>RdYlGn</span>&#8217;.</p>
     1768
     1769<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><o:p>&nbsp;</o:p></span></p>
     1770
     1771<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><o:p>&nbsp;</o:p></span></p>
     1772
     1773<div class=MsoNormal align=center style='text-align:center'><span
     1774style='mso-fareast-font-family:"Times New Roman"'>
     1775
     1776<hr size=2 width="100%" align=center>
     1777
     1778</span></div>
     1779
     1780<p class=MsoNormal><span style='mso-fareast-font-family:"Times New Roman"'><!-- hhmts start -->Last
     1781modified: Tue Nov 22 13:19:47 CST 2011 <o:p></o:p></span></p>
     1782
     1783<!-- hhmts end --></div>
     1784
     1785</body>
     1786
     1787</html>
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