Changeset 3354 for Tutorials/CWInstDemo/FindProfParamCW.htm
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- Apr 21, 2018 7:30:01 PM (5 years ago)
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Tutorials/CWInstDemo/FindProfParamCW.htm
r3342 r3354 25 25 <o:Author>Brian Toby</o:Author> 26 26 <o:LastAuthor>Brian Toby</o:LastAuthor> 27 <o:Revision> 4</o:Revision>28 <o:TotalTime> 168</o:TotalTime>29 <o:Created>2018-04- 12T21:09:00Z</o:Created>30 <o:LastSaved>2018-04- 12T21:19:00Z</o:LastSaved>31 <o:Pages> 7</o:Pages>32 <o:Words> 1353</o:Words>33 <o:Characters> 7717</o:Characters>27 <o:Revision>3</o:Revision> 28 <o:TotalTime>302</o:TotalTime> 29 <o:Created>2018-04-21T19:50:00Z</o:Created> 30 <o:LastSaved>2018-04-21T19:51:00Z</o:LastSaved> 31 <o:Pages>13</o:Pages> 32 <o:Words>2521</o:Words> 33 <o:Characters>14376</o:Characters> 34 34 <o:Company>Argonne National Laboratory</o:Company> 35 <o:Lines> 64</o:Lines>36 <o:Paragraphs> 18</o:Paragraphs>37 <o:CharactersWithSpaces> 9052</o:CharactersWithSpaces>35 <o:Lines>119</o:Lines> 36 <o:Paragraphs>33</o:Paragraphs> 37 <o:CharactersWithSpaces>16864</o:CharactersWithSpaces> 38 38 <o:Version>14.0</o:Version> 39 39 </o:DocumentProperties> … … 75 75 <w:HangulWidthLikeWW11/> 76 76 <w:UseNormalStyleForList/> 77 <w:SplitPgBreakAndParaMark/> 77 78 <w:DontVertAlignCellWithSp/> 78 79 <w:DontBreakConstrainedForcedTables/> … … 374 375 mso-generic-font-family:auto; 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… … 540 536 span.Heading2Char 541 537 {mso-style-name:"Heading 2 Char"; 538 mso-style-noshow:yes; 542 539 mso-style-priority:9; 543 540 mso-style-unhide:no; … … 556 553 span.Heading3Char 557 554 {mso-style-name:"Heading 3 Char"; 555 mso-style-noshow:yes; 558 556 mso-style-priority:9; 559 557 mso-style-unhide:no; … … 568 566 color:#4F81BD; 569 567 font-weight:bold;} 568 span.BalloonTextChar 569 {mso-style-name:"Balloon Text Char"; 570 mso-style-noshow:yes; 571 mso-style-priority:99; 572 mso-style-unhide:no; 573 mso-style-locked:yes; 574 mso-style-parent:""; 575 mso-style-link:"Balloon Text"; 576 mso-ansi-font-size:9.0pt; 577 mso-bidi-font-size:9.0pt; 578 font-family:"Lucida Grande"; 579 mso-ascii-font-family:"Lucida Grande"; 580 mso-hansi-font-family:"Lucida Grande"; 581 mso-bidi-font-family:"Lucida Grande";} 570 582 span.SpellE 571 583 {mso-style-name:""; … … 577 589 {mso-style-type:export-only; 578 590 mso-default-props:yes; 591 font-size:10.0pt; 592 mso-ansi-font-size:10.0pt; 593 mso-bidi-font-size:10.0pt; 594 font-family:Cambria; 579 595 mso-ascii-font-family:Cambria; 580 596 mso-fareast-font-family:"\FF2D\FF33 \660E\671D"; … … 683 699 </style> 684 700 <![endif]--><!--[if gte mso 9]><xml> 685 <o:shapedefaults v:ext="edit" spidmax=" 2050"/>701 <o:shapedefaults v:ext="edit" spidmax="1026"/> 686 702 </xml><![endif]--><!--[if gte mso 9]><xml> 687 703 <o:shapelayout v:ext="edit"> … … 694 710 <div class=WordSection1> 695 711 696 <h1>Determining Profile Parameters from a Standard</h1> 712 <h1><span style='mso-bidi-font-family:"Times New Roman"'>Determining Profile 713 Parameters from a Standard<o:p></o:p></span></h1> 697 714 698 715 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> … … 745 762 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 746 763 747 <h3><span style='font-size:14.0pt'>Step 2: Select Default Instrument Parameters<o:p></o:p></span></h3> 764 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 765 2: Select Default Instrument Parameters<o:p></o:p></span></h3> 748 766 749 767 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> … … 816 834 normal'>Click on the Limits</b> data tree item, and either change the <span 817 835 class=SpellE>Tmin</span> value from 10 to 20 or in the plot <b 818 style='mso-bidi-font-weight:normal'>ÒdragÓ the green line to the right</b> to approximately819 20 degrees. <o:p></o:p></span></p>836 style='mso-bidi-font-weight:normal'>ÒdragÓ the green line to the right</b> to 837 approximately 20 degrees. <o:p></o:p></span></p> 820 838 821 839 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; … … 829 847 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 830 848 831 <h3><span style='font-size:14.0pt'>Step 4: Add Peaks to Fit<o:p></o:p></span></h3> 849 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 850 4: Add Peaks to Fit<o:p></o:p></span></h3> 832 851 833 852 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 834 853 835 854 <p class=MsoNormal><span style='font-size:14.0pt'>To define peaks, <b 836 style='mso-bidi-font-weight:normal'>click on the ÒPeak List</b>Ó data tree item.837 Note that as below, the peak list is initially empty. <o:p></o:p></span></p>855 style='mso-bidi-font-weight:normal'>click on the ÒPeak List</b>Ó data tree 856 item. Note that as below, the peak list is initially empty. <o:p></o:p></span></p> 838 857 839 858 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; … … 868 887 style='font-size:14.0pt'> in the pattern. Note that if a peak is entered in the 869 888 wrong place <span class=GramE>it can be moved by ÒdraggingÓ it with the mouse</span>, 870 or use a right-click to delete it. Be careful to make sure two peaks are not entered871 in the same place by accident<span class=GramE>,.</span><o:p></o:p></span></p>889 or use a right-click to delete it. Be careful to make sure two peaks are not 890 entered in the same place by accident<span class=GramE>,.</span><o:p></o:p></span></p> 872 891 873 892 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; … … 891 910 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 892 911 893 <h3><span style='font-size:14.0pt'>Step 5: Refine Peak Areas<o:p></o:p></span></h3> 912 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 913 5: Refine Peak Areas<o:p></o:p></span></h3> 894 914 895 915 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 896 916 897 917 <p class=MsoNormal><span style='font-size:14.0pt'>By default, the peak 898 intensities <span class=GramE>are flagged as to be varied</span>, but not any 899 of the other parameters. It is wise to refine them all, but we want to make 900 sure the parameters have a chance to converge one step at a time and we should 901 start with only the intensities.<span style="mso-spacerun:yes"> 902 </span>Use the <b style='mso-bidi-font-weight:normal'>Peak Fitting/<span 903 class=SpellE>Peakfit</span></b> menu item to perform a peak refinement. You 904 will be asked for a name to save the project (enter a name such as <span 905 class=SpellE>peakfit.gpx</span> and press Save). The peaks are then fit, here 906 optimizing only the intensity values. The console window shows the details of 907 the refinement:<o:p></o:p></span></p> 918 intensities <span class=GramE>are flagged as to be varied</span>, but not any of 919 the other parameters. It is wise to refine them all, but we want to make sure 920 the parameters have a chance to converge one step at a time and we should start 921 with only the intensities.<span style="mso-spacerun:yes"> </span>Use the <b 922 style='mso-bidi-font-weight:normal'>Peak Fitting/<span class=SpellE>Peakfit</span></b> 923 menu item to perform a peak refinement. You will be asked for a name to save 924 the project (enter a name such as <span class=SpellE>peakfit.gpx</span> and 925 press Save). The peaks are then fit, here optimizing only the intensity values. 926 The console window shows the details of the refinement:<o:p></o:p></span></p> 908 927 909 928 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> … … 917 936 style='font-size:14.0pt'><o:p></o:p></span></p> 918 937 919 <p class=MsoNormal><span style='font-size:14.0pt'>The warning at the end is 920 because the default peak parameters describe a peak shape that is significantly 921 sharper than what is actually present for these data; the step size is actually 922 fine. This warning will later go away, but if it did not this would indicate 923 that it would be better to recollect the data with a step size decreased by a 924 factor of 3-4. <o:p></o:p></span></p> 925 926 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 927 928 <h3><span style='font-size:14.0pt'>Step 6: Refine peak areas and heights<o:p></o:p></span></h3> 938 <p class=MsoNormal><span style='font-size:14.0pt'>The warning at the end is because 939 the default peak parameters describe a peak shape that is significantly sharper 940 than what is actually present for these data; the step size is actually fine. 941 This warning will later go away, but if it did not this would indicate that it 942 would be better to recollect the data with a step size decreased by a factor of 943 3-4. <o:p></o:p></span></p> 944 945 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 946 947 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 948 6: Refine peak areas and heights<o:p></o:p></span></h3> 929 949 930 950 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> … … 973 993 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 974 994 975 <h3><span style='font-size:14.0pt '>Step 7: Refine peak areas, heights and976 widths (optional)<o:p></o:p></span></h3>995 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 996 7: Refine peak areas, heights and widths (optional)<o:p></o:p></span></h3> 977 997 978 998 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> … … 985 1005 style='mso-bidi-font-weight:normal'>Peak Fitting/<span class=SpellE>Peakfit</span></b> 986 1006 menu item to start peak refinement. The results in the console window are as 987 below. <span style="mso-spacerun:yes"> </span>This is being done here just1007 below.<span style="mso-spacerun:yes"> </span>This is being done here just 988 1008 to see how the individual peaks vary before we fit them with a parametric 989 1009 equation. This step is not necessary, but provides a useful graphical reference 990 to look for any anomalous peaks that one might not want to use. 991 style="mso-spacerun:yes"> </span><o:p></o:p></span></p>1010 to look for any anomalous peaks that one might not want to use.<span 1011 style="mso-spacerun:yes"> </span><o:p></o:p></span></p> 992 1012 993 1013 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> … … 1001 1021 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1002 1022 1003 <h3><span style='font-size:14.0pt'>Step 8: Add more Background terms<o:p></o:p></span></h3> 1023 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 1024 8: Add more Background terms<o:p></o:p></span></h3> 1004 1025 1005 1026 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> … … 1061 1082 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1062 1083 1063 <h3><span style='font-size:14.0pt'>Step 9: Refine Profile Parameters<o:p></o:p></span></h3> 1084 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 1085 9: Refine Profile Parameters<o:p></o:p></span></h3> 1064 1086 1065 1087 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> … … 1125 1147 also quite well fit now. <o:p></o:p></span></p> 1126 1148 1127 <h3><span style='font-size:14.0pt'>Step 10: Save the Profile Parameters<o:p></o:p></span></h3> 1149 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 1150 10: Save the Profile Parameters<o:p></o:p></span></h3> 1128 1151 1129 1152 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> … … 1147 1170 independently again, as shown in the next section. <o:p></o:p></span></p> 1148 1171 1149 <h3><span style='font-size:14.0pt '>Step 11: Plot Profile Parameters with1150 Individual Peak Widths (optional)<o:p></o:p></span></h3>1172 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 1173 11: Plot Profile Parameters with Individual Peak Widths (optional)<o:p></o:p></span></h3> 1151 1174 1152 1175 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> … … 1158 1181 1159 1182 <p class=MsoNormal><span style='font-size:14.0pt'><!--[if gte vml 1]><v:shape 1160 id="_x0000_i104 6" type="#_x0000_t75" style='width:393pt;height:254pt'>1183 id="_x0000_i1045" type="#_x0000_t75" style='width:393pt;height:254pt'> 1161 1184 <v:imagedata src="FindProfParamCW_files/image041.png" o:title=""/> 1162 1185 </v:shape><![endif]--><![if !vml]><img border=0 width=395 height=256 1163 src="FindProfParamCW_files/image042.png" v:shapes="_x0000_i104 6"><![endif]><o:p></o:p></span></p>1186 src="FindProfParamCW_files/image042.png" v:shapes="_x0000_i1045"><![endif]><o:p></o:p></span></p> 1164 1187 1165 1188 <p class=MsoNormal><span style='font-size:14.0pt'>In the <b style='mso-bidi-font-weight: … … 1169 1192 1170 1193 <p class=MsoNormal><span style='font-size:14.0pt'><!--[if gte vml 1]><v:shape 1171 id="_x0000_i104 7" type="#_x0000_t75" style='width:545pt;height:195pt'>1194 id="_x0000_i1046" type="#_x0000_t75" style='width:545pt;height:195pt'> 1172 1195 <v:imagedata src="FindProfParamCW_files/image043.png" o:title=""/> 1173 1196 </v:shape><![endif]--><![if !vml]><img border=0 width=547 height=197 1174 src="FindProfParamCW_files/image044.png" v:shapes="_x0000_i104 7"><![endif]><o:p></o:p></span></p>1197 src="FindProfParamCW_files/image044.png" v:shapes="_x0000_i1046"><![endif]><o:p></o:p></span></p> 1175 1198 1176 1199 <p class=MsoNormal><span class=GramE><span style='font-size:14.0pt'>and</span></span><span … … 1184 1207 1185 1208 <p class=MsoNormal><span style='font-size:14.0pt'><!--[if gte vml 1]><v:shape 1186 id="_x0000_i104 8" type="#_x0000_t75" style='width:537pt;height:426pt'>1209 id="_x0000_i1047" type="#_x0000_t75" style='width:537pt;height:426pt'> 1187 1210 <v:imagedata src="FindProfParamCW_files/image045.png" o:title=""/> 1188 1211 </v:shape><![endif]--><![if !vml]><img border=0 width=539 height=428 1189 src="FindProfParamCW_files/image046.png" v:shapes="_x0000_i104 8"><![endif]><o:p></o:p></span></p>1212 src="FindProfParamCW_files/image046.png" v:shapes="_x0000_i1047"><![endif]><o:p></o:p></span></p> 1190 1213 1191 1214 <p class=MsoNormal><span style='font-size:14.0pt'>The displayed lines and … … 1193 1216 widths are in red and their convolution (total broadening) is shown in blue: <o:p></o:p></span></p> 1194 1217 1195 <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l0 level1 lfo 1'><![if !supportLists]><span1218 <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l0 level1 lfo2'><![if !supportLists]><span 1196 1219 style='font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:Symbol; 1197 1220 mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>á<span … … 1203 1226 is exactly the same as the Gaussian so the blue curve hides the red one. <o:p></o:p></span></p> 1204 1227 1205 <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l0 level1 lfo 1'><![if !supportLists]><span1228 <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l0 level1 lfo2'><![if !supportLists]><span 1206 1229 style='font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:Symbol; 1207 1230 mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>á<span … … 1212 1235 from this instrument is significantly greater than the default</span> values. <o:p></o:p></span></p> 1213 1236 1214 <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l0 level1 lfo 1'><![if !supportLists]><span1237 <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l0 level1 lfo2'><![if !supportLists]><span 1215 1238 style='font-size:14.0pt;font-family:Symbol;mso-fareast-font-family:Symbol; 1216 1239 mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>á<span 1217 1240 style='font:7.0pt "Times New Roman"'> </span></span></span><![endif]><b 1218 style='mso-bidi-font-weight:normal'><span style='font-size:14.0pt'>Plus signs 1219 (points):</span></b><span style='font-size:14.0pt'> these are the widths for 1220 the individual reflections unconstrained. Note that they agree well with the 1221 fitted curves (dashed lines).<span style="mso-spacerun:yes"> </span><o:p></o:p></span></p> 1241 style='mso-bidi-font-weight:normal'><span style='font-size:14.0pt'>Plus signs (points):</span></b><span 1242 style='font-size:14.0pt'> these are the widths for the individual reflections 1243 unconstrained. Note that they agree well with the fitted curves (dashed 1244 lines).<span style="mso-spacerun:yes"> </span><o:p></o:p></span></p> 1245 1246 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1247 1248 <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span 1249 style='font-size:14.0pt'>These profile terms are more than adequate for most structural 1250 fitting problems, but it should be noted that these values are not sufficient 1251 to obtain quantitative measurements of <span class=SpellE>microstrain</span> and/or 1252 crystallite size. To obtain even better terms the instrument profile is best 1253 determined by a Rietveld fit for (with a standard where <span class=SpellE>microstrain</span> 1254 and size are known to be negligible or at least have certified values) Those certified 1255 values should be set as input values and not refined to allow U, V, W, X, and Y 1256 to be further refined. Ideally, in addition to higher angle data, the sample would 1257 also have lower angle peaks and SH/L can also be refined. <o:p></o:p></span></i></p> 1258 1259 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1260 1261 <h1>Part 2: Test the Profile Parameters</h1> 1262 1263 <p class=MsoNormal><o:p> </o:p></p> 1264 1265 <p class=MsoNormal><span style='font-size:14.0pt'>The obvious question will be 1266 how well do these parameters fit the data? To test this, we can start a new refinement 1267 using these parameters and see how well they do. <o:p></o:p></span></p> 1268 1269 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1270 1271 <p class=MsoNormal><span class=Heading3Char><span style='font-size:14.0pt'>Step 1272 2.1: Read in the Diffraction Data</span></span><span style='font-size:14.0pt'><o:p></o:p></span></p> 1273 1274 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1275 1276 <p class=MsoNormal style='mso-pagination:none;tab-stops:28.0pt 56.0pt 84.0pt 112.0pt 140.0pt 168.0pt 196.0pt 224.0pt 3.5in 280.0pt 308.0pt 336.0pt; 1277 mso-layout-grid-align:none;text-autospace:none'><span style='font-size:14.0pt'>Use 1278 File/New Project to create an empty project. You can say <span class=GramE>Yes</span> 1279 to the prompt to save the current project (No would not hurt.) As before, <span 1280 class=GramE>use <b style='mso-bidi-font-weight:normal'>Import/Powder Data/from <span 1281 class=SpellE>Brucker</span> RAW file</b> to read <span style='font-family:Courier'>file</span></span></span><span 1282 style='font-size:14.0pt;font-family:Courier'> </span><span style='font-size: 1283 14.0pt;font-family:Courier;mso-bidi-font-family:"Menlo Regular";color:black; 1284 mso-fareast-language:EN-US'>LaB6_Jan2018.raw</span><span style='font-size:14.0pt; 1285 font-family:"Menlo Regular";color:black;mso-fareast-language:EN-US'> </span><span 1286 style='font-size:14.0pt'>from the Tutorials <span class=SpellE>CWInstDemo</span>/data 1287 directory (downloaded already from <a 1288 href="https://subversion.xray.aps.anl.gov/pyGSAS/Tutorials/CWInstDemo/data/">https://subversion.xray.aps.anl.gov/pyGSAS/Tutorials/CWInstDemo/data/</a>). 1289 After selecting this file, answer yes to ÒIs this the file you want?Ó<o:p></o:p></span></p> 1290 1291 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1292 1293 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 1294 2.2: Select New Instrument Parameters<o:p></o:p></span></h3> 1295 1296 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1297 1298 <p class=MsoNormal><span style='font-size:14.0pt'>The next dialog to appear is 1299 titled, ÒChoose inst. <span class=SpellE>Param</span> file for LaB6_Jan2018.raw 1300 Scan 1 unlike before, we do have profile terms to read, from the file created 1301 in Step 10, above. Select the file written before (such as <<span 1302 class=SpellE><i style='mso-bidi-font-style:normal'>MyInstrument</i></span><i 1303 style='mso-bidi-font-style:normal'>></i>20-<span class=GramE>70deg.instparm )</span> 1304 and <b style='mso-bidi-font-weight:normal'>press OK</b>. <span 1305 style="mso-spacerun:yes"> </span>Note that you may need to change the file 1306 filter to see files of <span class=GramE>type .<span class=SpellE>instparm</span></span>. 1307 <o:p></o:p></span></p> 1308 1309 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1310 1311 <p class=MsoNormal><span style='font-size:14.0pt'>At present, the instrument 1312 type is not saved, so go to the Sample Parameters data tree item for the new 1313 histogram and change the <b style='mso-bidi-font-weight:normal'>Diffractometer 1314 type</b> from Debye-<span class=SpellE>Scherrer</span> <b style='mso-bidi-font-weight: 1315 normal'>to Bragg-Brentano</b>.<o:p></o:p></span></p> 1316 1317 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1318 1319 <p class=MsoNormal><span style='font-size:14.0pt'>(<span class=GramE>before</span>)<o:p></o:p></span></p> 1320 1321 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1322 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_24" o:spid="_x0000_i1070" 1323 type="#_x0000_t75" style='width:377pt;height:183pt;visibility:visible; 1324 mso-wrap-style:square'> 1325 <v:imagedata src="FindProfParamCW_files/image047.png" o:title=""/> 1326 </v:shape><![endif]--><![if !vml]><img border=0 width=379 height=185 1327 src="FindProfParamCW_files/image048.png" v:shapes="Picture_x0020_24"><![endif]></span><span 1328 style='font-size:14.0pt'><o:p></o:p></span></p> 1329 1330 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1331 1332 <p class=MsoNormal><span style='font-size:14.0pt'>(<span class=GramE>after</span>)<o:p></o:p></span></p> 1333 1334 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1335 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_25" o:spid="_x0000_i1069" 1336 type="#_x0000_t75" style='width:372pt;height:83pt;visibility:visible; 1337 mso-wrap-style:square'> 1338 <v:imagedata src="FindProfParamCW_files/image049.png" o:title=""/> 1339 </v:shape><![endif]--><![if !vml]><img border=0 width=374 height=85 1340 src="FindProfParamCW_files/image050.png" v:shapes="Picture_x0020_25"><![endif]></span><span 1341 style='font-size:14.0pt'><o:p></o:p></span></p> 1342 1343 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 2.3: 1344 Add Phase<o:p></o:p></span></h3> 1345 1346 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1347 1348 <p class=MsoNormal><span style='font-size:14.0pt'>We will add a phase for <span 1349 class=GramE>LaB6,</span> since this is a simple material we will input this by 1350 hand rather than trying to import it. <b style='mso-bidi-font-weight:normal'>Use 1351 Data/Add new phase</b> to create a new phase. <b style='mso-bidi-font-weight: 1352 normal'>Enter any name</b> you choose, though LaB6 is a good choice and <b 1353 style='mso-bidi-font-weight:normal'>press OK</b>. <o:p></o:p></span></p> 1354 1355 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1356 1357 <p class=MsoNormal><span style='font-size:14.0pt'>The symmetry and cell need to 1358 be edited on the new phaseÕs General tab. <b style='mso-bidi-font-weight:normal'>Click 1359 on the Space Group Button</b> (which defaults to P1) and <b style='mso-bidi-font-weight: 1360 normal'>enter P m -3 m</b> (note use of spaces to separate symmetry axes – 1361 though in this case since this is a standard setting, omitting the spaces works 1362 too. <span class=GramE>The space group symmetry information is displayed</span>, 1363 <span class=GramE><b style='mso-bidi-font-weight:normal'>click OK</b></span>. <o:p></o:p></span></p> 1364 1365 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1366 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_26" o:spid="_x0000_i1068" 1367 type="#_x0000_t75" style='width:191pt;height:246pt;visibility:visible; 1368 mso-wrap-style:square'> 1369 <v:imagedata src="FindProfParamCW_files/image051.png" o:title=""/> 1370 </v:shape><![endif]--><![if !vml]><img border=0 width=193 height=248 1371 src="FindProfParamCW_files/image052.png" v:shapes="Picture_x0020_26"><![endif]></span><span 1372 style='font-size:14.0pt'><o:p></o:p></span></p> 1373 1374 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1375 1376 <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span 1377 style='font-size:14.0pt'>Change the lattice constant</span></b><span 1378 style='font-size:14.0pt'> (<i style='mso-bidi-font-style:normal'>a</i>) from 1379 1.0 to <b style='mso-bidi-font-weight:normal'>4.15689</b> A. (The value for SRM 1380 660b)<o:p></o:p></span></p> 1381 1382 <p class=MsoNormal><span style="mso-spacerun:yes"> </span><span 1383 style='font-size:14.0pt;mso-fareast-language:EN-US;mso-no-proof:yes'><!--[if gte vml 1]><v:shape 1384 id="Picture_x0020_38" o:spid="_x0000_i1067" type="#_x0000_t75" style='width:5in; 1385 height:135pt;visibility:visible;mso-wrap-style:square'> 1386 <v:imagedata src="FindProfParamCW_files/image053.png" o:title=""/> 1387 </v:shape><![endif]--><![if !vml]><img border=0 width=362 height=137 1388 src="FindProfParamCW_files/image054.png" v:shapes="Picture_x0020_38"><![endif]></span><span 1389 style='font-size:14.0pt'><o:p></o:p></span></p> 1390 1391 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1392 1393 <p class=MsoNormal><span style='font-size:14.0pt'>Finally add atoms to the 1394 phase by <b style='mso-bidi-font-weight:normal'>clicking on the Atoms</b> <b 1395 style='mso-bidi-font-weight:normal'>tab</b>. Use the <b style='mso-bidi-font-weight: 1396 normal'>Edit Atoms/Append atom</b> menu item to insert an atom. A new atom is 1397 included in the table.<o:p></o:p></span></p> 1398 1399 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1400 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_29" o:spid="_x0000_i1066" 1401 type="#_x0000_t75" style='width:505pt;height:71pt;visibility:visible; 1402 mso-wrap-style:square'> 1403 <v:imagedata src="FindProfParamCW_files/image055.png" o:title=""/> 1404 </v:shape><![endif]--><![if !vml]><img border=0 width=507 height=73 1405 src="FindProfParamCW_files/image056.png" v:shapes="Picture_x0020_29"><![endif]></span><span 1406 style='font-size:14.0pt'><o:p></o:p></span></p> 1407 1408 <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span 1409 style='font-size:14.0pt'>Double-Click</span></b><span style='font-size:14.0pt'> 1410 on the <b style='mso-bidi-font-weight:normal'>Type</b> value (H) and which 1411 opens a periodic table window. Click on the <b style='mso-bidi-font-weight: 1412 normal'>arrow next to La</b> to bring up a menu of the defined valences<o:p></o:p></span></p> 1413 1414 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1415 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_30" o:spid="_x0000_i1065" 1416 type="#_x0000_t75" style='width:94pt;height:106pt;visibility:visible; 1417 mso-wrap-style:square'> 1418 <v:imagedata src="FindProfParamCW_files/image057.png" o:title=""/> 1419 </v:shape><![endif]--><![if !vml]><img border=0 width=96 height=108 1420 src="FindProfParamCW_files/image058.png" v:shapes="Picture_x0020_30"><![endif]></span><span 1421 style='font-size:14.0pt'><span style="mso-spacerun:yes"> </span><o:p></o:p></span></p> 1422 1423 <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span 1424 style='font-size:14.0pt'>Select La</span></b><span style='font-size:14.0pt'> (neutral 1425 atoms are usually preferred) from that pull-down and the period table window 1426 closes. This atom is located at position 0,0,0 so no further editing is needed. 1427 For completeness add the second by using the <b style='mso-bidi-font-weight: 1428 normal'>Edit Atoms/Append atom</b> menu item again. <span class=GramE>to</span> 1429 insert an atom. For the second atom, change the type to boron by <b 1430 style='mso-bidi-font-weight:normal'>Double-Clicking</b> on the <b 1431 style='mso-bidi-font-weight:normal'>Type</b> value (H) and selecting B (the 1432 only choice) from the pull-down. The coordinates for this atom are 0.1975,0.5,0.5 1433 so the x, y and z values must be edited.<o:p></o:p></span></p> 1434 1435 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1436 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_31" o:spid="_x0000_i1064" 1437 type="#_x0000_t75" style='width:513pt;height:56pt;visibility:visible; 1438 mso-wrap-style:square'> 1439 <v:imagedata src="FindProfParamCW_files/image059.png" o:title=""/> 1440 </v:shape><![endif]--><![if !vml]><img border=0 width=515 height=58 1441 src="FindProfParamCW_files/image060.png" v:shapes="Picture_x0020_31"><![endif]></span><span 1442 style='font-size:14.0pt'><o:p></o:p></span></p> 1443 1444 <p class=MsoNormal><span style='font-size:14.0pt'>Note that the site multiplicities 1445 indicate that the stoichiometry is La<sub>1</sub>B<sub>6</sub>, as is expected.<o:p></o:p></span></p> 1446 1447 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1448 1449 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 2.4: 1450 Link Histogram and Phase<o:p></o:p></span></h3> 1451 1452 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1453 1454 <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span 1455 style='font-size:14.0pt'>Click</span></b><span style='font-size:14.0pt'> on the 1456 <b style='mso-bidi-font-weight:normal'>Data tab</b> for the phase. Note that there 1457 are no associated histograms:<o:p></o:p></span></p> 1458 1459 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1460 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_35" o:spid="_x0000_i1063" 1461 type="#_x0000_t75" style='width:626pt;height:125pt;visibility:visible; 1462 mso-wrap-style:square'> 1463 <v:imagedata src="FindProfParamCW_files/image061.png" o:title=""/> 1464 </v:shape><![endif]--><![if !vml]><img border=0 width=628 height=127 1465 src="FindProfParamCW_files/image062.png" v:shapes="Picture_x0020_35"><![endif]></span><span 1466 style='font-size:14.0pt'><o:p></o:p></span></p> 1467 1468 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1469 1470 <p class=MsoNormal><span style='font-size:14.0pt'>Use the <b style='mso-bidi-font-weight: 1471 normal'>Edit Phase/Add Powder Histogram</b> menu command. <b style='mso-bidi-font-weight: 1472 normal'>Select</b> the one histogram and <b style='mso-bidi-font-weight:normal'>press 1473 OK</b>. <span style="mso-spacerun:yes"> </span><o:p></o:p></span></p> 1474 1475 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1476 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_36" o:spid="_x0000_i1062" 1477 type="#_x0000_t75" style='width:250pt;height:190pt;visibility:visible; 1478 mso-wrap-style:square'> 1479 <v:imagedata src="FindProfParamCW_files/image063.png" o:title=""/> 1480 </v:shape><![endif]--><![if !vml]><img border=0 width=252 height=192 1481 src="FindProfParamCW_files/image064.png" v:shapes="Picture_x0020_36"><![endif]></span><span 1482 style='font-size:14.0pt'><o:p></o:p></span></p> 1483 1484 <p class=MsoNormal><span style='font-size:14.0pt'>Nothing needs to be changed 1485 of the new parameters added here:<o:p></o:p></span></p> 1486 1487 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1488 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_37" o:spid="_x0000_i1061" 1489 type="#_x0000_t75" style='width:490pt;height:268pt;visibility:visible; 1490 mso-wrap-style:square'> 1491 <v:imagedata src="FindProfParamCW_files/image065.png" o:title=""/> 1492 </v:shape><![endif]--><![if !vml]><img border=0 width=492 height=270 1493 src="FindProfParamCW_files/image066.png" v:shapes="Picture_x0020_37"><![endif]></span><span 1494 style='font-size:14.0pt'><o:p></o:p></span></p> 1495 1496 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1497 1498 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 2.5: 1499 Refine Histogram Parameters<o:p></o:p></span></h3> 1500 1501 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1502 1503 <p class=MsoNormal><span style='font-size:14.0pt'>We will first change a few 1504 histogram parameters. For data tree item <b style='mso-bidi-font-weight:normal'>Limits 1505 change <span class=SpellE>Tmin</span> to 20</b> degrees, as was done before in 1506 step 3. <o:p></o:p></span></p> 1507 1508 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1509 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_32" o:spid="_x0000_i1060" 1510 type="#_x0000_t75" style='width:311pt;height:95pt;visibility:visible; 1511 mso-wrap-style:square'> 1512 <v:imagedata src="FindProfParamCW_files/image067.png" o:title=""/> 1513 </v:shape><![endif]--><![if !vml]><img border=0 width=313 height=97 1514 src="FindProfParamCW_files/image068.png" v:shapes="Picture_x0020_32"><![endif]></span><span 1515 style='font-size:14.0pt'><o:p></o:p></span></p> 1516 1517 <p class=MsoNormal><span style='font-size:14.0pt'>For data tree item <b 1518 style='mso-bidi-font-weight:normal'>Background change </b>the Number of <span 1519 class=SpellE><b style='mso-bidi-font-weight:normal'>coeff</b></span>. <span 1520 class=GramE><b style='mso-bidi-font-weight:normal'>to</b></span><b 1521 style='mso-bidi-font-weight:normal'> 6</b>, as was done before in step 8. <o:p></o:p></span></p> 1522 1523 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1524 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_33" o:spid="_x0000_i1059" 1525 type="#_x0000_t75" style='width:406pt;height:109pt;visibility:visible; 1526 mso-wrap-style:square'> 1527 <v:imagedata src="FindProfParamCW_files/image069.png" o:title=""/> 1528 </v:shape><![endif]--><![if !vml]><img border=0 width=408 height=111 1529 src="FindProfParamCW_files/image070.png" v:shapes="Picture_x0020_33"><![endif]></span><span 1530 style='font-size:14.0pt'><o:p></o:p></span></p> 1531 1532 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1533 1534 <p class=MsoNormal><span style='font-size:14.0pt'>Note that the refinement flag 1535 is on by default. We will <u>not refine</u> any of the Instrument parameters 1536 but we will refine the <b style='mso-bidi-font-weight:normal'>histogram scale 1537 factor (only)</b> on the <b style='mso-bidi-font-weight:normal'>Sample Parameters</b>.<o:p></o:p></span></p> 1538 1539 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1540 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_34" o:spid="_x0000_i1058" 1541 type="#_x0000_t75" style='width:391pt;height:177pt;visibility:visible; 1542 mso-wrap-style:square'> 1543 <v:imagedata src="FindProfParamCW_files/image071.png" o:title=""/> 1544 </v:shape><![endif]--><![if !vml]><img border=0 width=393 height=179 1545 src="FindProfParamCW_files/image072.png" v:shapes="Picture_x0020_34"><![endif]></span><span 1546 style='font-size:14.0pt'><o:p></o:p></span></p> 1547 1548 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1549 1550 <p class=MsoNormal><span style='font-size:14.0pt'>Use the <b style='mso-bidi-font-weight: 1551 normal'>Calculate/Refine</b> menu item to start refinement.<span 1552 style="mso-spacerun:yes"> </span>The program will prompt requesting a 1553 name for the <span class=GramE>newly-created</span> .<span class=SpellE>gpx</span> 1554 file. <o:p></o:p></span></p> 1555 1556 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1557 1558 <p class=MsoNormal><span style='font-size:14.0pt'>The fit is not very good. <b 1559 style='mso-bidi-font-weight:normal'>Clicking</b> on the histogramÕs (<b 1560 style='mso-bidi-font-weight:normal'>PWDR</b>) data tree item and zooming in 1561 shows that the <span class=GramE>tick are</span> not well aligned with the 1562 peaks. This is due to sample displacement. <o:p></o:p></span></p> 1563 1564 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1565 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_40" o:spid="_x0000_i1057" 1566 type="#_x0000_t75" style='width:419pt;height:309pt;visibility:visible; 1567 mso-wrap-style:square'> 1568 <v:imagedata src="FindProfParamCW_files/image073.png" o:title=""/> 1569 </v:shape><![endif]--><![if !vml]><img border=0 width=421 height=311 1570 src="FindProfParamCW_files/image074.png" v:shapes="Picture_x0020_40"><![endif]></span><span 1571 style='font-size:14.0pt'><o:p></o:p></span></p> 1572 1573 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1574 1575 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 2.6: 1576 Refine an additional Histogram Parameter<o:p></o:p></span></h3> 1577 1578 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1579 1580 <p class=MsoNormal><span style='font-size:14.0pt'>The position of the sample is 1581 never well determined in a Bragg-Brentano instrument, so the sample 1582 displacement should always be varied. Click on <b style='mso-bidi-font-weight: 1583 normal'>Sample Parameters </b>and turn on refinement of <b style='mso-bidi-font-weight: 1584 normal'>Sample displacement</b>.<o:p></o:p></span></p> 1585 1586 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1587 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_41" o:spid="_x0000_i1056" 1588 type="#_x0000_t75" style='width:338pt;height:192pt;visibility:visible; 1589 mso-wrap-style:square'> 1590 <v:imagedata src="FindProfParamCW_files/image075.png" o:title=""/> 1591 </v:shape><![endif]--><![if !vml]><img border=0 width=340 height=194 1592 src="FindProfParamCW_files/image076.png" v:shapes="Picture_x0020_41"><![endif]></span><span 1593 style='font-size:14.0pt'><o:p></o:p></span></p> 1594 1595 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1596 1597 <p class=MsoNormal><span style='font-size:14.0pt'>Use the <b style='mso-bidi-font-weight: 1598 normal'>Calculate/Refine</b> menu item to start another refinement.<span 1599 style="mso-spacerun:yes"> </span>Significant improvement is seen and even 1600 more if <b style='mso-bidi-font-weight:normal'>Calculate/Refine</b> is used a 1601 second time. <o:p></o:p></span></p> 1602 1603 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1604 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_42" o:spid="_x0000_i1055" 1605 type="#_x0000_t75" style='width:425pt;height:315pt;visibility:visible; 1606 mso-wrap-style:square'> 1607 <v:imagedata src="FindProfParamCW_files/image077.png" o:title=""/> 1608 </v:shape><![endif]--><![if !vml]><img border=0 width=427 height=317 1609 src="FindProfParamCW_files/image078.png" v:shapes="Picture_x0020_42"><![endif]></span><span 1610 style='font-size:14.0pt'><o:p></o:p></span></p> 1611 1612 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1613 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_43" o:spid="_x0000_i1054" 1614 type="#_x0000_t75" style='width:425pt;height:296pt;visibility:visible; 1615 mso-wrap-style:square'> 1616 <v:imagedata src="FindProfParamCW_files/image079.png" o:title=""/> 1617 </v:shape><![endif]--><![if !vml]><img border=0 width=427 height=298 1618 src="FindProfParamCW_files/image080.png" v:shapes="Picture_x0020_43"><![endif]></span><span 1619 style='font-size:14.0pt'><o:p></o:p></span></p> 1620 1621 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 2.6: 1622 Turn on Le Bail fitting<o:p></o:p></span></h3> 1623 1624 <p class=MsoNormal><span style='font-size:14.0pt'>Part of the problem in the 1625 fit is that the intensities are not well fit in the model. Rather than fitting 1626 the few free structural parameters (x for B and <span class=SpellE>Uiso</span> 1627 values), we will treat the intensities are arbitrary using Le Bail fitting. <span 1628 class=GramE>This is done by clicking on the <b style='mso-bidi-font-weight: 1629 normal'>Phase tree item</b></span> and the <b style='mso-bidi-font-weight:normal'>Data 1630 tab</b> and <b style='mso-bidi-font-weight:normal'>setting</b> the <b 1631 style='mso-bidi-font-weight:normal'>do <span class=SpellE>LeBail</span></b> 1632 extraction flag.<o:p></o:p></span></p> 1633 1634 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1635 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_44" o:spid="_x0000_i1053" 1636 type="#_x0000_t75" style='width:469pt;height:97pt;visibility:visible; 1637 mso-wrap-style:square'> 1638 <v:imagedata src="FindProfParamCW_files/image081.png" o:title=""/> 1639 </v:shape><![endif]--><![if !vml]><img border=0 width=471 height=99 1640 src="FindProfParamCW_files/image082.png" v:shapes="Picture_x0020_44"><![endif]></span><span 1641 style='font-size:14.0pt'><span style="mso-spacerun:yes"> </span><o:p></o:p></span></p> 1642 1643 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1644 1645 <p class=MsoNormal><span style='font-size:14.0pt'>Use the <b style='mso-bidi-font-weight: 1646 normal'>Calculate/Refine</b> menu item to start another refinement.<span 1647 style="mso-spacerun:yes"> </span>A warning message that ÒSteepest 1648 Descents dominatesÓ this is because a high degree of parameter correlation 1649 occurs as the reflection intensities change. The fit does not improve very much 1650 if <b style='mso-bidi-font-weight:normal'>Calculate/Refine</b> is used a second 1651 time but the warning goes away. <o:p></o:p></span></p> 1652 1653 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'><o:p> </o:p></span></h3> 1654 1655 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 2.7: 1656 Fit Lattice<o:p></o:p></span></h3> 1657 1658 <p class=MsoNormal><span style='font-size:14.0pt'>While this should not be 1659 needed for a standard, it is clear by looking at the plots that peaks are still 1660 not quite line up. In a less dense sample it might be reasonable to refine the 1661 sample transparency, but here the only reasonable parameter is to refine the 1662 lattice. On the <b style='mso-bidi-font-weight:normal'>Phase</b>Õs <b 1663 style='mso-bidi-font-weight:normal'>General</b> tab press the <b 1664 style='mso-bidi-font-weight:normal'>Refine unit cell</b> control.<o:p></o:p></span></p> 1665 1666 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1667 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_46" o:spid="_x0000_i1052" 1668 type="#_x0000_t75" style='width:354pt;height:129pt;visibility:visible; 1669 mso-wrap-style:square'> 1670 <v:imagedata src="FindProfParamCW_files/image083.png" o:title=""/> 1671 </v:shape><![endif]--><![if !vml]><img border=0 width=356 height=131 1672 src="FindProfParamCW_files/image084.png" v:shapes="Picture_x0020_46"><![endif]></span><span 1673 style='font-size:14.0pt'><o:p></o:p></span></p> 1674 1675 <p class=MsoNormal><span style='font-size:14.0pt'>Use the <b style='mso-bidi-font-weight: 1676 normal'>Calculate/Refine</b> menu item to start another refinement and the 1677 positioning of the peaks improves significantly. <o:p></o:p></span></p> 1678 1679 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 2.8: 1680 Fit <span class=SpellE>MicroStrain</span><o:p></o:p></span></h3> 1681 1682 <p class=MsoNormal><span style='font-size:14.0pt'>The remaining major problem 1683 is that we have not treated the sample broadening and LaB6 does have some <span 1684 class=SpellE>microstrain</span>. That can be refined on <span class=GramE>the <span 1685 style="mso-spacerun:yes"> </span>s</span>. One is that can be refined with 1686 the <b style='mso-bidi-font-weight:normal'>Phase</b>Õs <b style='mso-bidi-font-weight: 1687 normal'>Data</b> tab with the <span class=SpellE>microstrain</span> control.<o:p></o:p></span></p> 1688 1689 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1690 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_45" o:spid="_x0000_i1051" 1691 type="#_x0000_t75" style='width:729pt;height:104pt;visibility:visible; 1692 mso-wrap-style:square'> 1693 <v:imagedata src="FindProfParamCW_files/image085.png" o:title=""/> 1694 </v:shape><![endif]--><![if !vml]><img border=0 width=731 height=106 1695 src="FindProfParamCW_files/image086.png" v:shapes="Picture_x0020_45"><![endif]></span><span 1696 style='font-size:14.0pt'><o:p></o:p></span></p> 1697 1698 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1699 1700 <p class=MsoNormal><span style='font-size:14.0pt'>Use the <b style='mso-bidi-font-weight: 1701 normal'>Calculate/Refine</b> menu item to start another refinement. A second 1702 refinement cycle brings the <span class=SpellE>Rw</span> to circa 5.8%. The fit 1703 improves dramatically and <span class=SpellE>microstrain</span> refines to a 1704 non-physical negative value. This is because our somewhat nave approach above 1705 assumed no sample broadening. <o:p></o:p></span></p> 1706 1707 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1708 1709 <p class=MsoNormal><i style='mso-bidi-font-style:normal'><span 1710 style='font-size:14.0pt'>This shows why if determination of <span class=SpellE>microstrain</span> 1711 and/or crystallite size broadening <span class=GramE>is intended to be measured</span> 1712 quantitatively, the instrument profile is best determined by a Rietveld fit and 1713 with fixed (known) values for the <span class=SpellE>microstrain</span> and 1714 size in the standard. <o:p></o:p></span></i></p> 1715 1716 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 2.9: 1717 Additional Parameters<o:p></o:p></span></h3> 1718 1719 <p class=MsoNormal><span style='font-size:14.0pt'>For these data, it appears 1720 the ratio of Kalpha1 and Kalpha2 is not exactly the theoretical value of 0.5. 1721 This can happen due to monochromator tuning. Allowing this to shift slightly by 1722 including brings the <span class=SpellE>Rw</span> to circa 4.9%.<o:p></o:p></span></p> 1723 1724 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1725 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_47" o:spid="_x0000_i1050" 1726 type="#_x0000_t75" style='width:277pt;height:88pt;visibility:visible; 1727 mso-wrap-style:square'> 1728 <v:imagedata src="FindProfParamCW_files/image087.png" o:title=""/> 1729 </v:shape><![endif]--><![if !vml]><img border=0 width=279 height=90 1730 src="FindProfParamCW_files/image088.png" v:shapes="Picture_x0020_47"><![endif]></span><span 1731 style='font-size:14.0pt'><o:p></o:p></span></p> 1732 1733 <p class=MsoNormal><span style='font-size:14.0pt'>The fit is quite good without 1734 fitting the instrumental profile terms: <o:p></o:p></span></p> 1735 1736 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1737 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_49" o:spid="_x0000_i1049" 1738 type="#_x0000_t75" style='width:627pt;height:363pt;visibility:visible; 1739 mso-wrap-style:square'> 1740 <v:imagedata src="FindProfParamCW_files/image089.png" o:title=""/> 1741 </v:shape><![endif]--><![if !vml]><img border=0 width=629 height=365 1742 src="FindProfParamCW_files/image090.png" v:shapes="Picture_x0020_49"><![endif]></span><span 1743 style='font-size:14.0pt'><o:p></o:p></span></p> 1744 1745 <p class=MsoNormal><span style='font-size:14.0pt'><o:p> </o:p></span></p> 1746 1747 <h3><span style='font-size:14.0pt;mso-bidi-font-family:"Times New Roman"'>Step 2.10: 1748 Profile Term Quality Check<o:p></o:p></span></h3> 1749 1750 <p class=MsoNormal><span style='font-size:14.0pt'>The quality of the profile 1751 parameters we previously fit can be demonstrated by turning off refinement of the 1752 <span class=SpellE>microstrain</span> term and refining the U, V, W and X & 1753 Y terms. This produces a small improvement in the fit (expected as one fitting 1754 parameter as been replaced by 5), but the changes are very small, as noted by 1755 the Instrument Parameter terms plot:<o:p></o:p></span></p> 1756 1757 <p class=MsoNormal><span style='font-size:14.0pt;mso-fareast-language:EN-US; 1758 mso-no-proof:yes'><!--[if gte vml 1]><v:shape id="Picture_x0020_48" o:spid="_x0000_i1048" 1759 type="#_x0000_t75" style='width:531pt;height:395pt;visibility:visible; 1760 mso-wrap-style:square'> 1761 <v:imagedata src="FindProfParamCW_files/image091.png" o:title=""/> 1762 </v:shape><![endif]--><![if !vml]><img border=0 width=533 height=397 1763 src="FindProfParamCW_files/image092.png" v:shapes="Picture_x0020_48"><![endif]></span><span 1764 style='font-size:14.0pt'><o:p></o:p></span></p> 1222 1765 1223 1766 </div>
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