Changeset 3265
- Timestamp:
- Feb 6, 2018 5:28:42 PM (5 years ago)
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trunk/help/gsasII.html
r3193 r3265 3226 3226 The leftmost entries in the GSAS-II menu provide access to many 3227 3227 features of GSAS-II. Other menu items will change depending on what 3228 type of entry is selected in the data tree. The menu commands that are3229 always3228 type of entry is selected in the data tree. The menu commands that 3229 do not change and are described below in the 3230 3230 <A href="#main_menu">main menu commands</a> section.</p> 3231 . Depending on They do not change and are described below as the3232 3231 3233 3232 <hr size=2 width="100%" align=center> … … 3263 3262 3264 3263 <p class=MsoNormal style='margin-left:.5in'><span><span 3265 style='mso-fareast-font-family:"Times New Roman"'>The first nine icons3266 are named: <b3264 style='mso-fareast-font-family:"Times New Roman"'>The first nine or ten 3265 icons have the following functions: <b 3267 3266 style='mso-bidi-font-weight:normal'>Home</b>, <b style='mso-bidi-font-weight: 3268 3267 normal'>Back</b>, <b style='mso-bidi-font-weight:normal'>Forward</b>, <b 3269 3268 style='mso-bidi-font-weight:normal'>Pan</b>, <b style='mso-bidi-font-weight: 3270 normal'>Zoom</b>, <b style='mso-bidi-font-weight:normal'>Save</b>, <B>Key Press</B> and <b 3271 style='mso-bidi-font-weight:normal'>Help</b>, respectively. The 3272 remainder move or rescale the plot. <span 3269 normal'>Zoom</b>, 3270 <B>Resize plot</B>, 3271 <b style='mso-bidi-font-weight:normal'>Save</b>, <B>Key Press</B> and <b 3272 style='mso-bidi-font-weight:normal'>Help</b>, respectively and are 3273 described below. The 3274 remainder (yellow arrows) move or rescale the plot. Note that 3275 <B>Resize plot</B> is removed from the toolbar where matplotlib 3276 allows this and should not be used. 3277 <span 3273 3278 class=MsoHyperlink><span style='color:windowtext;text-decoration:none; 3274 3279 text-underline:none'><o:p></o:p></span></span></span></span></p> … … 3334 3339 yet been saved, you will be prompted for a new name in a file 3335 3340 dialog (you may optionally change the directory in that 3336 dialog). If the file exists, you will be asked if it OK to3341 dialog). If the file exists, you will be asked if it is OK to 3337 3342 overwrite it. Once a file name has been used to read or save a 3338 3343 project, the name is shown … … 3342 3347 specified project file. You will be prompted for a new name in a file 3343 3348 dialog (you may optionally change the directory in that 3344 dialog). If the file exists, you will be asked if it OK to3349 dialog). If the file exists, you will be asked if it is OK to 3345 3350 overwrite it. 3346 3351 <DT><b>New Project</b> … … 3385 3390 space group names must have spaces between the axial fields 3386 3391 (e.g. use ‘P n a 21’ not ‘Pna21’). 3387 <DT><b>Delete data</b>3392 <DT><b>Delete phase</b> 3388 3393 <DD>This will remove a phase from the data tree. A dialog box will 3389 3394 present the list of phases; pick one (or more) to delete. 3390 <DT><b>Rename data</b>3395 <DT><b>Rename tree item</b> 3391 3396 <DD>Rename a histogram entry. This should only be done before the 3392 3397 histogram is used in any phases: e.g. only rename data 3393 3398 immediately after reading. 3394 <DT><b>Delete data</b>3399 <DT><b>Delete tree item</b> 3395 3400 <DD>This will remove an item from the data tree. A dialog box with 3396 a list of choices for histograms is presented. Do not remove 3397 histograms that are used in phases. 3401 a list of choices for histograms is presented. Be sure to remove 3402 a histograms from all phases before deleting it from the tree. 3403 <DT><b>Expand tree item</b> 3404 <DD>This will show child entries for specified type of items 3405 (Images, Powder patterns, etc.)</DD> 3406 <DT><b>Move tree item</b> 3407 <DD>Move classes of Tree items around in the tree. Individual 3408 top-level tree items can be moved using the left mouse button. 3409 </DD> 3410 3398 3411 </DL> 3399 3412 … … 3418 3431 not a refinable parameter, but the shift in the value is. Position 3419 3432 names are, e.g. ‘0::Ax:0’ for the x-position of the 0th atom in 3420 the 0th phase while shift names have a ‘d’ in the n,3433 the 0th phase while shift names have a ‘d’ in them, 3421 3434 e.g. ‘0::dAx:0’. Press the window exit button to exit this dialog box. 3422 3435 <DT><b>Refine</b> … … 3503 3516 extension) or a new GSAS-II .instparm file. 3504 3517 <P>Note that it is possible to apply corrections to the 2-theta, 3505 intensity or weight values by creating a addingPython command(s) to3518 intensity or weight values by adding a Python command(s) to 3506 3519 the instrument (.instprm) parameter with a variable named 3507 3520 CorrectionCode. See the <tt>CorrectionCode.instprm.sample</tt> file … … 3575 3588 <LI>Menu <B>Export</B> 3576 3589 <P>GSAS-II uses separate routines to write out files with 3577 information in formation inside GSAS-II. These routines can be3590 information inside GSAS-II. These routines can be 3578 3591 created and customized easily. See the GSAS-II Export Modules 3579 3592 section of the <a href=#Programmers><strong>Programmers … … 4097 4110 4098 4111 <h4 style='margin-left:0.25in'><a name="Sequential"></a><u><span style='mso-fareast-font-family: 4099 "Times New Roman"'>Sequential</span></u><span style='mso-fareast-font-family: 4100 "Times New Roman"'> refinement results<o:p></o:p></span></h4> 4101 4102 <p class=MsoNormal style='margin-left:.5in'>In this window is tabulated the 4103 results of your sequential refinement. The columns are the parameter names; the 4112 "Times New Roman"'>Sequential refinement results</span></u></h4> 4113 4114 <p class=MsoNormal style='margin-left:.5in'>This tree entry is 4115 available after a sequential refinement has been run. (See the <a 4116 href="#Controls">Controls tree item</a> to set the histograms to be 4117 used in a sequential refinement and use the Calculate/Sequential 4118 refine menu command to run the refinement.) 4119 When this is selected, the window tabulates the 4120 sequential refinement results. The columns are the parameter names; the 4104 4121 naming convention is ‘p:h:name:n’ where ‘p’ is the phase number,’ h’ is the 4105 4122 histogram number, ‘name’ is the parameter name, and ‘n’ (if needed) is the item … … 4231 4248 powder patterns taken at different wavelengths/types on the same x-axis scale. 4232 4249 4233 <DT><B> t: toggle Qplot</b><dd>changes the x-axis from 2Theta to d-space.4250 <DT><B> t: toggle D-space plot</b><dd>changes the x-axis from 2Theta to d-space. 4234 4251 This will put multiple 4235 4252 powder patterns taken at different wavelengths/types on the same … … 4259 4276 <DT><B>l: offset left</b><dd> 4260 4277 for a waterfall plot of multiple powder profiles, increase the 4261 offset to the left. 4278 offset so that later plots are shifted more to the left relative to 4279 previous plots. 4262 4280 4263 4281 <DT><B>r: offset right</b><dd> 4264 4282 for a waterfall plot of multiple powder profiles, increase the 4265 offset to the left.4283 offset to the right (or decrease the left offset.) 4266 4284 4267 4285 <DT><B> d: offset down</b><dd>for a waterfall plot of multiple … … 4894 4912 4895 4913 <DT>Peak copy</DT> 4896 <DD>Copy the curre bt set of peaks to other histogram(s)4914 <DD>Copy the current set of peaks to other histogram(s) 4897 4915 </DD> 4898 4916 … … 5404 5422 <a href="#PDF_G_R">G(R) functions</a> to be plotted, as described 5405 5423 separately, below. 5406 below. 5424 5407 5425 </P> 5408 5426 … … 5440 5458 <DT><B>l: offset left</b><dd> 5441 5459 for a waterfall plot of multiple powder profiles, increase the 5442 offset to the left. 5460 offset so that later plots are shifted more to the left relative to 5461 previous plots. 5443 5462 5444 5463 <DT><B>r: offset right</b><dd> 5445 5464 for a waterfall plot of multiple powder profiles, increase the 5446 offset to the left.5465 offset to the right (or decrease the left offset.) 5447 5466 5448 5467 <DT><B> d: offset down</b><dd>for a waterfall plot of multiple … … 5532 5551 location and thickness of the ring are specified in degrees 5533 5552 2-theta. 5534 <LI style='margin-left:.5in'>Arc masks: occlude sa section of a Bragg5553 <LI style='margin-left:.5in'>Arc masks: occlude a section of a Bragg 5535 5554 reflection, similar to a ring mask, except that in addition to the 5536 5555 location and thickness of the ring, the mask has a starting and ending 5537 5556 azimuthal angle. 5538 <LI style='margin-left:.5in'>Polygon masks: occlude san arbitary5557 <LI style='margin-left:.5in'>Polygon masks: occlude an arbitary 5539 5558 region created by line segments joining a series of points 5540 5559 specified in image coordinates (mm). Pixels inside the polygon mask are not … … 5581 5600 masks. Press the 's' key again or <a href="#Mac_rightclick">right-click*</a> 5582 5601 to stop adding spot masks. 5583 <LI style='margin-left:.2in'> Move the mouse to the position for a5602 <LI style='margin-left:.2in'>Alternately, move the mouse to the position for a 5584 5603 new spot mask and press the 't' key. (Note that 5585 5604 this can be used while the plot is in Zoom or Pan mode.) … … 6241 6260 are defined, one for along the axis and one for in the perpendicular 6242 6261 plane; with ellipsoidal, six terms are used to define a broadening 6243 tensor that mak havearbitrary orientation -- this model may require6262 tensor that has arbitrary orientation -- this model may require 6244 6263 constraints and is seldomly needed. 6245 6264 Note that size broadening is usually Lorentzian, which corresponds to … … 6434 6453 style='mso-bidi-font-weight:normal'>Shift</b> & <b style='mso-bidi-font-weight: 6435 6454 normal'>Ctrl</b> allow selection of multiple cells but no use is made of them). 6436 An individual data item can be cu p/pasted anywhere including from/to another6455 An individual data item can be cut/pasted anywhere including from/to another 6437 6456 document. Bad entries are rejected. If any entry is changed, press <b 6438 6457 style='mso-bidi-font-weight:normal'>Enter</b> key or select another atom entry … … 7082 7101 7083 7102 GSAS-II can be run on Windows, Linux and Macintosh/OS X computers, but 7084 due to the different nature of the Mac, the program behaves slightly 7085 differently. On Windows and Linux, there are two menu bars: (A) found 7086 at the top of the GSAS-II data tree and (B) on GSAS-II data editing 7087 window. The latter changes, based on which data item is selected in 7088 the data tree. On the Mac, these menus are combined located on the 7103 the GUI follows the native style of Mac OS X. 7104 On Windows and some versions of Linux, the menu bars appears on top of 7105 the main window. 7106 On the Mac, the menu appears at the 7089 7107 location that has been configured for menus (usually at the top of the 7090 screen). The main manu and the data editing menu (if present) are 7091 separated by a vertical bar. 7092 <P> 7093 GSAS-II uses both the left and right buttons on a two-button mouse. If 7094 a mac has a two or three-button mouse attached, these mouse buttons will be 7095 used on the other platforms. If using a Mac touchpad or single-button 7096 mouse, the control-key should be held down to simulate use of the 7097 right mouse button. The left button click is generated otherwise. 7108 screen). 7109 GSAS-II defines actions for both the left and right buttons on a two-button mouse, 7110 If a two or three-button mouse is used with a Mac, these mouse buttons 7111 will work as intended. If using 7112 a Mac touchpad or single-button 7113 mouse, clicking the touchpad or mouse button will generate a "left 7114 button" click. Hold down the control-key to generate a "right button" click. 7098 7115 7099 7116 <h3><a name="Preferences"><strong>Configuration Variables</strong></a><strong>:<o:p></o:p></strong></h3> … … 7103 7120 be changed via variables that can be set and saved. These are 7104 7121 controlled in the File/Preferences menu item (on Mac the Preferences 7105 menu is found in the usual place , in the main application menu). These7122 menu is found in the usual place on Macs, in the main application menu). These 7106 7123 settings are optionally saved from for subsequent runs in a file named 7107 7124 <tt>config.py</tt>. More information about this can be found in the … … 7125 7142 <hr size=2 width="100%" align=center> 7126 7143 7127 <!-- hhmts start -->Last modified: T hu Dec 14 23:57:16 CST 2017<!-- hhmts end -->7144 <!-- hhmts start -->Last modified: Tue Feb 6 17:27:23 CST 2018 <!-- hhmts end --> 7128 7145 7129 7146 </div>
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