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56 | <div class="section" id="gsas-ii-export-modules"> |
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57 | <h1><em>GSAS-II Export Modules</em><a class="headerlink" href="#gsas-ii-export-modules" title="Permalink to this headline">¶</a></h1> |
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58 | <p>Exports are implemented by deriving a class from |
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59 | <tt class="xref py py-class docutils literal"><span class="pre">GSASIIIO.ExportBaseClass</span></tt>. Initialization of |
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60 | <tt class="docutils literal"><span class="pre">self.exporttype</span></tt> determines the type of export that will be performed |
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61 | (‘project’, ‘phase’, ‘single’, ‘powder’, ‘image’, ‘map’ or (someday) |
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62 | ‘pdf’) and of <tt class="docutils literal"><span class="pre">self.multiple</span></tt> |
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63 | determines if only a single phase, data set, etc. can be exported at a time (when False) or more than one can be selected.</p> |
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64 | <span class="target" id="module-G2export_examples"></span><div class="section" id="module-g2export-examples-examples"> |
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65 | <h2><em>Module G2export_examples: Examples</em><a class="headerlink" href="#module-g2export-examples-examples" title="Permalink to this headline">¶</a></h2> |
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66 | <p>Code to demonstrate how GSAS-II data export routines are created. The |
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67 | classes defined here, <a class="reference internal" href="#G2export_examples.ExportPhaseText" title="G2export_examples.ExportPhaseText"><tt class="xref py py-class docutils literal"><span class="pre">ExportPhaseText</span></tt></a>, |
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68 | <a class="reference internal" href="#G2export_examples.ExportSingleText" title="G2export_examples.ExportSingleText"><tt class="xref py py-class docutils literal"><span class="pre">ExportSingleText</span></tt></a>, <a class="reference internal" href="#G2export_examples.ExportPowderReflText" title="G2export_examples.ExportPowderReflText"><tt class="xref py py-class docutils literal"><span class="pre">ExportPowderReflText</span></tt></a>, |
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69 | and <a class="reference internal" href="#G2export_examples.ExportPowderText" title="G2export_examples.ExportPowderText"><tt class="xref py py-class docutils literal"><span class="pre">ExportPowderText</span></tt></a> each demonstrate a different type |
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70 | of export. Also see <a class="reference internal" href="#G2export_map.ExportMapASCII" title="G2export_map.ExportMapASCII"><tt class="xref py py-class docutils literal"><span class="pre">G2export_map.ExportMapASCII</span></tt></a> for an |
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71 | example of a map export.</p> |
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72 | <dl class="class"> |
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73 | <dt id="G2export_examples.ExportPhaseText"> |
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74 | <em class="property">class </em><tt class="descclassname">G2export_examples.</tt><tt class="descname">ExportPhaseText</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_examples.html#ExportPhaseText"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_examples.ExportPhaseText" title="Permalink to this definition">¶</a></dt> |
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75 | <dd><p>Used to create a text file for a phase</p> |
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76 | <table class="docutils field-list" frame="void" rules="none"> |
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77 | <col class="field-name" /> |
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78 | <col class="field-body" /> |
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79 | <tbody valign="top"> |
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80 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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81 | </tr> |
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82 | </tbody> |
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83 | </table> |
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84 | <dl class="method"> |
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85 | <dt id="G2export_examples.ExportPhaseText.Exporter"> |
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86 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_examples.html#ExportPhaseText.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_examples.ExportPhaseText.Exporter" title="Permalink to this definition">¶</a></dt> |
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87 | <dd><p>Export a phase as a text file</p> |
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88 | </dd></dl> |
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89 | |
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90 | </dd></dl> |
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91 | |
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92 | <dl class="class"> |
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93 | <dt id="G2export_examples.ExportPowderReflText"> |
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94 | <em class="property">class </em><tt class="descclassname">G2export_examples.</tt><tt class="descname">ExportPowderReflText</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_examples.html#ExportPowderReflText"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_examples.ExportPowderReflText" title="Permalink to this definition">¶</a></dt> |
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95 | <dd><p>Used to create a text file of reflections from a powder data set</p> |
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96 | <table class="docutils field-list" frame="void" rules="none"> |
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97 | <col class="field-name" /> |
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98 | <col class="field-body" /> |
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99 | <tbody valign="top"> |
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100 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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101 | </tr> |
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102 | </tbody> |
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103 | </table> |
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104 | <dl class="method"> |
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105 | <dt id="G2export_examples.ExportPowderReflText.Exporter"> |
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106 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_examples.html#ExportPowderReflText.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_examples.ExportPowderReflText.Exporter" title="Permalink to this definition">¶</a></dt> |
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107 | <dd><p>Export a set of powder reflections as a text file</p> |
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108 | </dd></dl> |
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109 | |
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110 | </dd></dl> |
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111 | |
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112 | <dl class="class"> |
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113 | <dt id="G2export_examples.ExportPowderText"> |
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114 | <em class="property">class </em><tt class="descclassname">G2export_examples.</tt><tt class="descname">ExportPowderText</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_examples.html#ExportPowderText"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_examples.ExportPowderText" title="Permalink to this definition">¶</a></dt> |
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115 | <dd><p>Used to create a text file for a powder data set</p> |
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116 | <table class="docutils field-list" frame="void" rules="none"> |
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117 | <col class="field-name" /> |
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118 | <col class="field-body" /> |
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119 | <tbody valign="top"> |
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120 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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121 | </tr> |
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122 | </tbody> |
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123 | </table> |
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124 | <dl class="method"> |
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125 | <dt id="G2export_examples.ExportPowderText.Exporter"> |
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126 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_examples.html#ExportPowderText.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_examples.ExportPowderText.Exporter" title="Permalink to this definition">¶</a></dt> |
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127 | <dd><p>Export a set of powder data as a text file</p> |
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128 | </dd></dl> |
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129 | |
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130 | </dd></dl> |
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131 | |
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132 | <dl class="class"> |
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133 | <dt id="G2export_examples.ExportSingleText"> |
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134 | <em class="property">class </em><tt class="descclassname">G2export_examples.</tt><tt class="descname">ExportSingleText</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_examples.html#ExportSingleText"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_examples.ExportSingleText" title="Permalink to this definition">¶</a></dt> |
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135 | <dd><p>Used to create a text file with single crystal reflection data</p> |
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136 | <table class="docutils field-list" frame="void" rules="none"> |
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137 | <col class="field-name" /> |
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138 | <col class="field-body" /> |
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139 | <tbody valign="top"> |
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140 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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141 | </tr> |
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142 | </tbody> |
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143 | </table> |
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144 | <dl class="method"> |
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145 | <dt id="G2export_examples.ExportSingleText.Exporter"> |
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146 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_examples.html#ExportSingleText.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_examples.ExportSingleText.Exporter" title="Permalink to this definition">¶</a></dt> |
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147 | <dd><p>Export a set of single crystal data as a text file</p> |
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148 | </dd></dl> |
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149 | |
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150 | </dd></dl> |
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151 | |
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152 | </div> |
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153 | <span class="target" id="module-G2export_csv"></span><div class="section" id="module-g2export-csv-spreadsheet-export"> |
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154 | <h2><em>Module G2export_csv: Spreadsheet export</em><a class="headerlink" href="#module-g2export-csv-spreadsheet-export" title="Permalink to this headline">¶</a></h2> |
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155 | <p>Code to create .csv (comma-separated variable) files for |
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156 | GSAS-II data export to a spreadsheet program, etc.</p> |
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157 | <dl class="class"> |
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158 | <dt id="G2export_csv.ExportPhaseCSV"> |
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159 | <em class="property">class </em><tt class="descclassname">G2export_csv.</tt><tt class="descname">ExportPhaseCSV</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#ExportPhaseCSV"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.ExportPhaseCSV" title="Permalink to this definition">¶</a></dt> |
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160 | <dd><p>Used to create a csv file for a phase</p> |
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161 | <table class="docutils field-list" frame="void" rules="none"> |
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162 | <col class="field-name" /> |
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163 | <col class="field-body" /> |
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164 | <tbody valign="top"> |
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165 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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166 | </tr> |
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167 | </tbody> |
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168 | </table> |
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169 | <dl class="method"> |
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170 | <dt id="G2export_csv.ExportPhaseCSV.Exporter"> |
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171 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#ExportPhaseCSV.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.ExportPhaseCSV.Exporter" title="Permalink to this definition">¶</a></dt> |
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172 | <dd><p>Export a phase as a csv file</p> |
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173 | </dd></dl> |
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174 | |
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175 | </dd></dl> |
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176 | |
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177 | <dl class="class"> |
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178 | <dt id="G2export_csv.ExportPowderCSV"> |
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179 | <em class="property">class </em><tt class="descclassname">G2export_csv.</tt><tt class="descname">ExportPowderCSV</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#ExportPowderCSV"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.ExportPowderCSV" title="Permalink to this definition">¶</a></dt> |
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180 | <dd><p>Used to create a csv file for a powder data set</p> |
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181 | <table class="docutils field-list" frame="void" rules="none"> |
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182 | <col class="field-name" /> |
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183 | <col class="field-body" /> |
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184 | <tbody valign="top"> |
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185 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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186 | </tr> |
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187 | </tbody> |
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188 | </table> |
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189 | <dl class="method"> |
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190 | <dt id="G2export_csv.ExportPowderCSV.Exporter"> |
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191 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#ExportPowderCSV.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.ExportPowderCSV.Exporter" title="Permalink to this definition">¶</a></dt> |
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192 | <dd><p>Export a set of powder data as a csv file</p> |
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193 | </dd></dl> |
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194 | |
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195 | </dd></dl> |
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196 | |
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197 | <dl class="class"> |
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198 | <dt id="G2export_csv.ExportPowderReflCSV"> |
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199 | <em class="property">class </em><tt class="descclassname">G2export_csv.</tt><tt class="descname">ExportPowderReflCSV</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#ExportPowderReflCSV"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.ExportPowderReflCSV" title="Permalink to this definition">¶</a></dt> |
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200 | <dd><p>Used to create a csv file of reflections from a powder data set</p> |
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201 | <table class="docutils field-list" frame="void" rules="none"> |
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202 | <col class="field-name" /> |
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203 | <col class="field-body" /> |
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204 | <tbody valign="top"> |
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205 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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206 | </tr> |
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207 | </tbody> |
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208 | </table> |
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209 | <dl class="method"> |
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210 | <dt id="G2export_csv.ExportPowderReflCSV.Exporter"> |
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211 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#ExportPowderReflCSV.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.ExportPowderReflCSV.Exporter" title="Permalink to this definition">¶</a></dt> |
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212 | <dd><p>Export a set of powder reflections as a csv file</p> |
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213 | </dd></dl> |
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214 | |
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215 | </dd></dl> |
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216 | |
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217 | <dl class="class"> |
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218 | <dt id="G2export_csv.ExportSingleCSV"> |
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219 | <em class="property">class </em><tt class="descclassname">G2export_csv.</tt><tt class="descname">ExportSingleCSV</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#ExportSingleCSV"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.ExportSingleCSV" title="Permalink to this definition">¶</a></dt> |
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220 | <dd><p>Used to create a csv file with single crystal reflection data</p> |
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221 | <table class="docutils field-list" frame="void" rules="none"> |
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222 | <col class="field-name" /> |
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223 | <col class="field-body" /> |
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224 | <tbody valign="top"> |
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225 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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226 | </tr> |
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227 | </tbody> |
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228 | </table> |
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229 | <dl class="method"> |
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230 | <dt id="G2export_csv.ExportSingleCSV.Exporter"> |
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231 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#ExportSingleCSV.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.ExportSingleCSV.Exporter" title="Permalink to this definition">¶</a></dt> |
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232 | <dd><p>Export a set of single crystal data as a csv file</p> |
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233 | </dd></dl> |
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234 | |
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235 | </dd></dl> |
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236 | |
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237 | <dl class="class"> |
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238 | <dt id="G2export_csv.ExportStrainCSV"> |
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239 | <em class="property">class </em><tt class="descclassname">G2export_csv.</tt><tt class="descname">ExportStrainCSV</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#ExportStrainCSV"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.ExportStrainCSV" title="Permalink to this definition">¶</a></dt> |
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240 | <dd><p>Used to create a csv file with single crystal reflection data</p> |
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241 | <table class="docutils field-list" frame="void" rules="none"> |
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242 | <col class="field-name" /> |
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243 | <col class="field-body" /> |
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244 | <tbody valign="top"> |
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245 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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246 | </tr> |
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247 | </tbody> |
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248 | </table> |
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249 | <dl class="method"> |
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250 | <dt id="G2export_csv.ExportStrainCSV.Exporter"> |
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251 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#ExportStrainCSV.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.ExportStrainCSV.Exporter" title="Permalink to this definition">¶</a></dt> |
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252 | <dd><p>Export a set of single crystal data as a csv file</p> |
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253 | </dd></dl> |
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254 | |
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255 | </dd></dl> |
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256 | |
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257 | <dl class="function"> |
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258 | <dt id="G2export_csv.WriteList"> |
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259 | <tt class="descclassname">G2export_csv.</tt><tt class="descname">WriteList</tt><big>(</big><em>obj</em>, <em>headerItems</em><big>)</big><a class="reference internal" href="_modules/G2export_csv.html#WriteList"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_csv.WriteList" title="Permalink to this definition">¶</a></dt> |
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260 | <dd><p>Write a CSV header</p> |
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261 | <table class="docutils field-list" frame="void" rules="none"> |
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262 | <col class="field-name" /> |
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263 | <col class="field-body" /> |
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264 | <tbody valign="top"> |
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265 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> |
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266 | <li><strong>obj</strong> (<em>object</em>) – Exporter object</li> |
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267 | <li><strong>headerItems</strong> (<em>list</em>) – items to write as a header</li> |
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268 | </ul> |
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269 | </td> |
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270 | </tr> |
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271 | </tbody> |
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272 | </table> |
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273 | </dd></dl> |
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274 | |
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275 | </div> |
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276 | <span class="target" id="module-G2export_PDB"></span><div class="section" id="module-g2export-pdb-macromolecular-export"> |
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277 | <h2><em>Module G2export_PDB: Macromolecular export</em><a class="headerlink" href="#module-g2export-pdb-macromolecular-export" title="Permalink to this headline">¶</a></h2> |
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278 | <p>Code to export a phase into the venerated/obsolete (pick one) |
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279 | ASCII PDB format. Also defines exporter <a class="reference internal" href="#G2export_PDB.ExportPhaseCartXYZ" title="G2export_PDB.ExportPhaseCartXYZ"><tt class="xref py py-class docutils literal"><span class="pre">ExportPhaseCartXYZ</span></tt></a> |
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280 | which writes atom positions in orthogonal coordinates for a phase.</p> |
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281 | <dl class="class"> |
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282 | <dt id="G2export_PDB.ExportPhaseCartXYZ"> |
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283 | <em class="property">class </em><tt class="descclassname">G2export_PDB.</tt><tt class="descname">ExportPhaseCartXYZ</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_PDB.html#ExportPhaseCartXYZ"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_PDB.ExportPhaseCartXYZ" title="Permalink to this definition">¶</a></dt> |
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284 | <dd><p>Used to create a Cartesian XYZ file for a phase</p> |
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285 | <table class="docutils field-list" frame="void" rules="none"> |
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286 | <col class="field-name" /> |
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287 | <col class="field-body" /> |
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288 | <tbody valign="top"> |
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289 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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290 | </tr> |
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291 | </tbody> |
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292 | </table> |
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293 | <dl class="method"> |
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294 | <dt id="G2export_PDB.ExportPhaseCartXYZ.Exporter"> |
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295 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_PDB.html#ExportPhaseCartXYZ.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_PDB.ExportPhaseCartXYZ.Exporter" title="Permalink to this definition">¶</a></dt> |
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296 | <dd><p>Export as a XYZ file</p> |
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297 | </dd></dl> |
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298 | |
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299 | </dd></dl> |
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300 | |
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301 | <dl class="class"> |
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302 | <dt id="G2export_PDB.ExportPhasePDB"> |
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303 | <em class="property">class </em><tt class="descclassname">G2export_PDB.</tt><tt class="descname">ExportPhasePDB</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_PDB.html#ExportPhasePDB"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_PDB.ExportPhasePDB" title="Permalink to this definition">¶</a></dt> |
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304 | <dd><p>Used to create a PDB file for a phase</p> |
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305 | <table class="docutils field-list" frame="void" rules="none"> |
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306 | <col class="field-name" /> |
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307 | <col class="field-body" /> |
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308 | <tbody valign="top"> |
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309 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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310 | </tr> |
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311 | </tbody> |
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312 | </table> |
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313 | <dl class="method"> |
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314 | <dt id="G2export_PDB.ExportPhasePDB.Exporter"> |
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315 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_PDB.html#ExportPhasePDB.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_PDB.ExportPhasePDB.Exporter" title="Permalink to this definition">¶</a></dt> |
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316 | <dd><p>Export as a PDB file</p> |
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317 | </dd></dl> |
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318 | |
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319 | </dd></dl> |
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320 | |
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321 | </div> |
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322 | <span class="target" id="module-G2export_image"></span><div class="section" id="module-g2export-image-2d-image-data-export"> |
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323 | <h2><em>Module G2export_image: 2D Image data export</em><a class="headerlink" href="#module-g2export-image-2d-image-data-export" title="Permalink to this headline">¶</a></h2> |
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324 | <p>Demonstrates how an image is retrieved and written. Uses |
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325 | a SciPy routine to write a PNG format file.</p> |
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326 | <dl class="class"> |
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327 | <dt id="G2export_image.ExportImagePNG"> |
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328 | <em class="property">class </em><tt class="descclassname">G2export_image.</tt><tt class="descname">ExportImagePNG</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_image.html#ExportImagePNG"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_image.ExportImagePNG" title="Permalink to this definition">¶</a></dt> |
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329 | <dd><p>Used to create a PNG file for a GSAS-II image</p> |
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330 | <table class="docutils field-list" frame="void" rules="none"> |
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331 | <col class="field-name" /> |
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332 | <col class="field-body" /> |
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333 | <tbody valign="top"> |
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334 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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335 | </tr> |
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336 | </tbody> |
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337 | </table> |
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338 | <dl class="method"> |
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339 | <dt id="G2export_image.ExportImagePNG.Exporter"> |
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340 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_image.html#ExportImagePNG.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_image.ExportImagePNG.Exporter" title="Permalink to this definition">¶</a></dt> |
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341 | <dd><p>Export an image</p> |
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342 | </dd></dl> |
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343 | |
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344 | </dd></dl> |
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345 | |
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346 | </div> |
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347 | <span class="target" id="module-G2export_map"></span><div class="section" id="module-g2export-map-map-export"> |
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348 | <h2><em>Module G2export_map: Map export</em><a class="headerlink" href="#module-g2export-map-map-export" title="Permalink to this headline">¶</a></h2> |
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349 | <p>Code to write Fourier/Charge-Flip atomic density maps out in formats that |
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350 | can be read by external programs. At present a GSAS format |
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351 | that is supported by FOX and DrawXTL |
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352 | (<a class="reference internal" href="#G2export_map.ExportMapASCII" title="G2export_map.ExportMapASCII"><tt class="xref py py-class docutils literal"><span class="pre">ExportMapASCII</span></tt></a>) and the CCP4 format that |
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353 | is used by COOT (<a class="reference internal" href="#G2export_map.ExportMapCCP4" title="G2export_map.ExportMapCCP4"><tt class="xref py py-class docutils literal"><span class="pre">ExportMapCCP4</span></tt></a>) are implemented.</p> |
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354 | <dl class="class"> |
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355 | <dt id="G2export_map.ExportMapASCII"> |
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356 | <em class="property">class </em><tt class="descclassname">G2export_map.</tt><tt class="descname">ExportMapASCII</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_map.html#ExportMapASCII"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_map.ExportMapASCII" title="Permalink to this definition">¶</a></dt> |
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357 | <dd><p>Used to create a text file for a phase</p> |
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358 | <table class="docutils field-list" frame="void" rules="none"> |
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359 | <col class="field-name" /> |
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360 | <col class="field-body" /> |
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361 | <tbody valign="top"> |
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362 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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363 | </tr> |
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364 | </tbody> |
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365 | </table> |
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366 | <dl class="method"> |
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367 | <dt id="G2export_map.ExportMapASCII.Exporter"> |
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368 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_map.html#ExportMapASCII.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_map.ExportMapASCII.Exporter" title="Permalink to this definition">¶</a></dt> |
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369 | <dd><p>Export a map as a text file</p> |
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370 | </dd></dl> |
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371 | |
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372 | </dd></dl> |
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373 | |
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374 | <dl class="class"> |
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375 | <dt id="G2export_map.ExportMapCCP4"> |
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376 | <em class="property">class </em><tt class="descclassname">G2export_map.</tt><tt class="descname">ExportMapCCP4</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_map.html#ExportMapCCP4"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_map.ExportMapCCP4" title="Permalink to this definition">¶</a></dt> |
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377 | <dd><p>Used to create a text file for a phase</p> |
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378 | <table class="docutils field-list" frame="void" rules="none"> |
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379 | <col class="field-name" /> |
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380 | <col class="field-body" /> |
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381 | <tbody valign="top"> |
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382 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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383 | </tr> |
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384 | </tbody> |
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385 | </table> |
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386 | <dl class="method"> |
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387 | <dt id="G2export_map.ExportMapCCP4.Exporter"> |
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388 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_map.html#ExportMapCCP4.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_map.ExportMapCCP4.Exporter" title="Permalink to this definition">¶</a></dt> |
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389 | <dd><p>Export a map as a text file</p> |
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390 | </dd></dl> |
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391 | |
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392 | </dd></dl> |
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393 | |
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394 | </div> |
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395 | <span class="target" id="module-G2export_shelx"></span><div class="section" id="module-g2export-shelx-examples"> |
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396 | <h2><em>Module G2export_shelx: Examples</em><a class="headerlink" href="#module-g2export-shelx-examples" title="Permalink to this headline">¶</a></h2> |
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397 | <p>Code to export coordinates in the SHELX .ins format |
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398 | (as best as I can makes sense of it).</p> |
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399 | <dl class="class"> |
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400 | <dt id="G2export_shelx.ExportPhaseShelx"> |
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401 | <em class="property">class </em><tt class="descclassname">G2export_shelx.</tt><tt class="descname">ExportPhaseShelx</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_shelx.html#ExportPhaseShelx"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_shelx.ExportPhaseShelx" title="Permalink to this definition">¶</a></dt> |
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402 | <dd><p>Used to create a SHELX .ins file for a phase</p> |
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403 | <table class="docutils field-list" frame="void" rules="none"> |
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404 | <col class="field-name" /> |
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405 | <col class="field-body" /> |
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406 | <tbody valign="top"> |
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407 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
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408 | </tr> |
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409 | </tbody> |
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410 | </table> |
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411 | <dl class="method"> |
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412 | <dt id="G2export_shelx.ExportPhaseShelx.Exporter"> |
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413 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_shelx.html#ExportPhaseShelx.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_shelx.ExportPhaseShelx.Exporter" title="Permalink to this definition">¶</a></dt> |
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414 | <dd><p>Export as a SHELX .ins file</p> |
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415 | </dd></dl> |
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416 | |
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417 | </dd></dl> |
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418 | |
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419 | </div> |
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420 | <span class="target" id="module-G2export_CIF"></span><div class="section" id="module-g2export-cif-cif-exports"> |
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421 | <h2><em>Module G2export_CIF: CIF Exports</em><a class="headerlink" href="#module-g2export-cif-cif-exports" title="Permalink to this headline">¶</a></h2> |
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422 | <p>This implements a complex exporter <a class="reference internal" href="#G2export_CIF.ExportCIF" title="G2export_CIF.ExportCIF"><tt class="xref py py-class docutils literal"><span class="pre">ExportCIF</span></tt></a> that can implement an |
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423 | entire project in a complete CIF intended for submission as a |
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424 | publication. In addition, there are two subclasses of <a class="reference internal" href="#G2export_CIF.ExportCIF" title="G2export_CIF.ExportCIF"><tt class="xref py py-class docutils literal"><span class="pre">ExportCIF</span></tt></a>: |
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425 | <a class="reference internal" href="#G2export_CIF.ExportPhaseCIF" title="G2export_CIF.ExportPhaseCIF"><tt class="xref py py-class docutils literal"><span class="pre">ExportPhaseCIF</span></tt></a> and <a class="reference internal" href="#G2export_CIF.ExportDataCIF" title="G2export_CIF.ExportDataCIF"><tt class="xref py py-class docutils literal"><span class="pre">ExportDataCIF</span></tt></a> that |
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426 | export a single phase or data set. Note that <tt class="docutils literal"><span class="pre">self.mode</span></tt> determines |
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427 | what is written:</p> |
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428 | <blockquote> |
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429 | <div><ul class="simple"> |
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430 | <li><cite>self.mode=”simple”</cite> creates a simple CIF with only coordinates |
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431 | or data, while</li> |
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432 | <li><cite>self.mode=”full”</cite> creates a complete CIF of project.</li> |
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433 | </ul> |
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434 | </div></blockquote> |
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435 | <dl class="function"> |
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436 | <dt id="G2export_CIF.CIF2dict"> |
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437 | <tt class="descclassname">G2export_CIF.</tt><tt class="descname">CIF2dict</tt><big>(</big><em>cf</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#CIF2dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.CIF2dict" title="Permalink to this definition">¶</a></dt> |
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438 | <dd><p>copy the contents of a CIF out from a PyCifRW block object |
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439 | into a dict</p> |
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440 | <table class="docutils field-list" frame="void" rules="none"> |
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441 | <col class="field-name" /> |
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442 | <col class="field-body" /> |
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443 | <tbody valign="top"> |
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444 | <tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">cifblk, loopstructure where cifblk is a dict with |
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445 | CIF items and loopstructure is a list of lists that defines |
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446 | which items are in which loops.</td> |
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447 | </tr> |
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448 | </tbody> |
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449 | </table> |
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450 | </dd></dl> |
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451 | |
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452 | <dl class="class"> |
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453 | <dt id="G2export_CIF.CIFdefHelp"> |
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454 | <em class="property">class </em><tt class="descclassname">G2export_CIF.</tt><tt class="descname">CIFdefHelp</tt><big>(</big><em>parent</em>, <em>msg</em>, <em>helpwin</em>, <em>helptxt</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#CIFdefHelp"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.CIFdefHelp" title="Permalink to this definition">¶</a></dt> |
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455 | <dd><p>Create a help button that displays help information on |
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456 | the current data item</p> |
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457 | <table class="docutils field-list" frame="void" rules="none"> |
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458 | <col class="field-name" /> |
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459 | <col class="field-body" /> |
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460 | <tbody valign="top"> |
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461 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> |
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462 | <li><strong>parent</strong> – the panel which will be the parent of the button</li> |
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463 | <li><strong>msg</strong> (<em>str</em>) – the help text to be displayed</li> |
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464 | <li><strong>helpwin</strong> (<em>wx.Dialog</em>) – Frame for CIF editing dialog</li> |
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465 | <li><strong>helptxt</strong> (<em>wx.TextCtrl</em>) – TextCtrl where help text is placed</li> |
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466 | </ul> |
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467 | </td> |
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468 | </tr> |
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469 | </tbody> |
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470 | </table> |
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471 | </dd></dl> |
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472 | |
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473 | <dl class="class"> |
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474 | <dt id="G2export_CIF.CIFtemplateSelect"> |
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475 | <em class="property">class </em><tt class="descclassname">G2export_CIF.</tt><tt class="descname">CIFtemplateSelect</tt><big>(</big><em>frame</em>, <em>panel</em>, <em>tmplate</em>, <em>G2dict</em>, <em>repaint</em>, <em>title</em>, <em>defaultname=''</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#CIFtemplateSelect"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.CIFtemplateSelect" title="Permalink to this definition">¶</a></dt> |
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476 | <dd><p>Create a set of buttons to show, select and edit a CIF template</p> |
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477 | <table class="docutils field-list" frame="void" rules="none"> |
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478 | <col class="field-name" /> |
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479 | <col class="field-body" /> |
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480 | <tbody valign="top"> |
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481 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> |
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482 | <li><strong>frame</strong> – wx.Frame object of parent</li> |
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483 | <li><strong>panel</strong> – wx.Panel object where widgets should be placed</li> |
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484 | <li><strong>tmplate</strong> (<em>str</em>) – one of ‘publ’, ‘phase’, or ‘instrument’ to determine |
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485 | the type of template</li> |
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486 | <li><strong>G2dict</strong> (<em>dict</em>) – GSAS-II dict where CIF should be placed. The key |
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487 | “CIF_template” will be used to store either a list or a string. |
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488 | If a list, it will contain a dict and a list defining loops. If |
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489 | an str, it will contain a file name.</li> |
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490 | <li><strong>repaint</strong> (<em>function</em>) – reference to a routine to be called to repaint |
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491 | the frame after a change has been made</li> |
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492 | <li><strong>title</strong> (<em>str</em>) – A line of text to show at the top of the window</li> |
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493 | <li><strong>defaultname</strong> (<em>str</em>) – specifies the default file name to be used for |
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494 | saving the CIF.</li> |
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495 | </ul> |
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496 | </td> |
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497 | </tr> |
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498 | </tbody> |
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499 | </table> |
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500 | </dd></dl> |
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501 | |
---|
502 | <dl class="class"> |
---|
503 | <dt id="G2export_CIF.EditCIFpanel"> |
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504 | <em class="property">class </em><tt class="descclassname">G2export_CIF.</tt><tt class="descname">EditCIFpanel</tt><big>(</big><em>parent</em>, <em>cifblk</em>, <em>loopstructure</em>, <em>cifdic={}</em>, <em>OKbuttons=</em>, <span class="optional">[</span><span class="optional">]</span><em>**kw</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#EditCIFpanel"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.EditCIFpanel" title="Permalink to this definition">¶</a></dt> |
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505 | <dd><p>Creates a scrolled panel for editing CIF template items</p> |
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506 | <table class="docutils field-list" frame="void" rules="none"> |
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507 | <col class="field-name" /> |
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508 | <col class="field-body" /> |
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509 | <tbody valign="top"> |
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510 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> |
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511 | <li><strong>parent</strong> (<em>wx.Frame</em>) – parent frame where panel will be placed</li> |
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512 | <li><strong>cifblk</strong> – dict or PyCifRW block containing values for each CIF item</li> |
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513 | <li><strong>loopstructure</strong> (<em>list</em>) – <p>a list of lists containing the contents of |
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514 | each loop, as an example:</p> |
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515 | <div class="highlight-python"><div class="highlight"><pre><span class="p">[</span> <span class="p">[</span><span class="s">"_a"</span><span class="p">,</span><span class="s">"_b"</span><span class="p">],</span> <span class="p">[</span><span class="s">"_c"</span><span class="p">],</span> <span class="p">[</span><span class="s">"_d_1"</span><span class="p">,</span><span class="s">"_d_2"</span><span class="p">,</span><span class="s">"_d_3"</span><span class="p">]]</span> |
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516 | </pre></div> |
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517 | </div> |
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518 | <p>this describes a CIF with this type of structure:</p> |
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519 | <div class="highlight-python"><div class="highlight"><pre>loop_ _a _b <a1> <b1> <a2> ... |
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520 | loop_ _c <c1> <c2>... |
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521 | loop _d_1 _d_2 _d_3 ... |
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522 | </pre></div> |
---|
523 | </div> |
---|
524 | <p>Note that the values for each looped CIF item, such as _a, |
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525 | are contained in a list, for example as cifblk[“_a”]</p> |
---|
526 | </li> |
---|
527 | <li><strong>cifdic</strong> (<em>dict</em>) – optional CIF dictionary definitions</li> |
---|
528 | <li><strong>OKbuttons</strong> (<em>list</em>) – A list of wx.Button objects that should |
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529 | be disabled when information in the CIF is invalid</li> |
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530 | <li><strong>(other)</strong> – optional keyword parameters for wx.ScrolledPanel</li> |
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531 | </ul> |
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532 | </td> |
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533 | </tr> |
---|
534 | </tbody> |
---|
535 | </table> |
---|
536 | <dl class="method"> |
---|
537 | <dt id="G2export_CIF.EditCIFpanel.CIFEntryWidget"> |
---|
538 | <tt class="descname">CIFEntryWidget</tt><big>(</big><em>dct</em>, <em>item</em>, <em>dataname</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#EditCIFpanel.CIFEntryWidget"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.EditCIFpanel.CIFEntryWidget" title="Permalink to this definition">¶</a></dt> |
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539 | <dd><p>Create an entry widget for a CIF item. Use a validated entry for numb values |
---|
540 | where int is required when limits are integers and floats otherwise. |
---|
541 | At present this does not allow entry of the special CIF values of ”.” and ”?” for |
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542 | numerical values and highlights them as invalid. |
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543 | Use a selection widget when there are specific enumerated values for a string.</p> |
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544 | </dd></dl> |
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545 | |
---|
546 | <dl class="method"> |
---|
547 | <dt id="G2export_CIF.EditCIFpanel.ControlOKButton"> |
---|
548 | <tt class="descname">ControlOKButton</tt><big>(</big><em>setvalue</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#EditCIFpanel.ControlOKButton"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.EditCIFpanel.ControlOKButton" title="Permalink to this definition">¶</a></dt> |
---|
549 | <dd><p>Enable or Disable the OK button(s) for the dialog. Note that this is |
---|
550 | passed into the ValidatedTxtCtrl for use by validators.</p> |
---|
551 | <table class="docutils field-list" frame="void" rules="none"> |
---|
552 | <col class="field-name" /> |
---|
553 | <col class="field-body" /> |
---|
554 | <tbody valign="top"> |
---|
555 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>setvalue</strong> (<em>bool</em>) – if True, all entries in the dialog are |
---|
556 | checked for validity. The first invalid control triggers |
---|
557 | disabling of buttons. |
---|
558 | If False then the OK button(s) are disabled with no checking |
---|
559 | of the invalid flag for each control.</td> |
---|
560 | </tr> |
---|
561 | </tbody> |
---|
562 | </table> |
---|
563 | </dd></dl> |
---|
564 | |
---|
565 | <dl class="method"> |
---|
566 | <dt id="G2export_CIF.EditCIFpanel.DoLayout"> |
---|
567 | <tt class="descname">DoLayout</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#EditCIFpanel.DoLayout"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.EditCIFpanel.DoLayout" title="Permalink to this definition">¶</a></dt> |
---|
568 | <dd><p>Update the Layout and scroll bars for the Panel. Clears |
---|
569 | self.LayoutCalled so that next change to panel can |
---|
570 | request a new update</p> |
---|
571 | </dd></dl> |
---|
572 | |
---|
573 | <dl class="method"> |
---|
574 | <dt id="G2export_CIF.EditCIFpanel.OnAddRow"> |
---|
575 | <tt class="descname">OnAddRow</tt><big>(</big><em>event</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#EditCIFpanel.OnAddRow"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.EditCIFpanel.OnAddRow" title="Permalink to this definition">¶</a></dt> |
---|
576 | <dd><p>add a row to a loop</p> |
---|
577 | </dd></dl> |
---|
578 | |
---|
579 | <dl class="method"> |
---|
580 | <dt id="G2export_CIF.EditCIFpanel.OnLayoutNeeded"> |
---|
581 | <tt class="descname">OnLayoutNeeded</tt><big>(</big><em>event</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#EditCIFpanel.OnLayoutNeeded"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.EditCIFpanel.OnLayoutNeeded" title="Permalink to this definition">¶</a></dt> |
---|
582 | <dd><p>Called when an update of the panel layout is needed. Calls |
---|
583 | self.DoLayout after the current operations are complete using |
---|
584 | CallAfter. This is called only once, according to flag |
---|
585 | self.LayoutCalled, which is cleared in self.DoLayout.</p> |
---|
586 | </dd></dl> |
---|
587 | |
---|
588 | </dd></dl> |
---|
589 | |
---|
590 | <dl class="class"> |
---|
591 | <dt id="G2export_CIF.EditCIFtemplate"> |
---|
592 | <em class="property">class </em><tt class="descclassname">G2export_CIF.</tt><tt class="descname">EditCIFtemplate</tt><big>(</big><em>parent</em>, <em>cifblk</em>, <em>loopstructure</em>, <em>defaultname</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#EditCIFtemplate"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.EditCIFtemplate" title="Permalink to this definition">¶</a></dt> |
---|
593 | <dd><p>Create a dialog for editing a CIF template. The edited information is |
---|
594 | placed in cifblk. If the CIF is saved as a file, the name of that file |
---|
595 | is saved as <tt class="docutils literal"><span class="pre">self.newfile</span></tt>.</p> |
---|
596 | <table class="docutils field-list" frame="void" rules="none"> |
---|
597 | <col class="field-name" /> |
---|
598 | <col class="field-body" /> |
---|
599 | <tbody valign="top"> |
---|
600 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple"> |
---|
601 | <li><strong>parent</strong> (<em>wx.Frame</em>) – parent frame or None</li> |
---|
602 | <li><strong>cifblk</strong> – dict or PyCifRW block containing values for each CIF item</li> |
---|
603 | <li><strong>loopstructure</strong> (<em>list</em>) – <p>a list of lists containing the contents of |
---|
604 | each loop, as an example:</p> |
---|
605 | <div class="highlight-python"><div class="highlight"><pre><span class="p">[</span> <span class="p">[</span><span class="s">"_a"</span><span class="p">,</span><span class="s">"_b"</span><span class="p">],</span> <span class="p">[</span><span class="s">"_c"</span><span class="p">],</span> <span class="p">[</span><span class="s">"_d_1"</span><span class="p">,</span><span class="s">"_d_2"</span><span class="p">,</span><span class="s">"_d_3"</span><span class="p">]]</span> |
---|
606 | </pre></div> |
---|
607 | </div> |
---|
608 | <p>this describes a CIF with this type of structure:</p> |
---|
609 | <div class="highlight-python"><div class="highlight"><pre>loop_ _a _b <a1> <b1> <a2> ... |
---|
610 | loop_ _c <c1> <c2>... |
---|
611 | loop _d_1 _d_2 _d_3 ... |
---|
612 | </pre></div> |
---|
613 | </div> |
---|
614 | <p>Note that the values for each looped CIF item, such as _a, |
---|
615 | are contained in a list, for example as cifblk[“_a”]</p> |
---|
616 | </li> |
---|
617 | <li><strong>defaultname</strong> (<em>str</em>) – specifies the default file name to be used for |
---|
618 | saving the CIF.</li> |
---|
619 | </ul> |
---|
620 | </td> |
---|
621 | </tr> |
---|
622 | </tbody> |
---|
623 | </table> |
---|
624 | <dl class="method"> |
---|
625 | <dt id="G2export_CIF.EditCIFtemplate.Post"> |
---|
626 | <tt class="descname">Post</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#EditCIFtemplate.Post"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.EditCIFtemplate.Post" title="Permalink to this definition">¶</a></dt> |
---|
627 | <dd><p>Display the dialog</p> |
---|
628 | <table class="docutils field-list" frame="void" rules="none"> |
---|
629 | <col class="field-name" /> |
---|
630 | <col class="field-body" /> |
---|
631 | <tbody valign="top"> |
---|
632 | <tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">True unless Cancel has been pressed.</td> |
---|
633 | </tr> |
---|
634 | </tbody> |
---|
635 | </table> |
---|
636 | </dd></dl> |
---|
637 | |
---|
638 | </dd></dl> |
---|
639 | |
---|
640 | <dl class="class"> |
---|
641 | <dt id="G2export_CIF.ExportCIF"> |
---|
642 | <em class="property">class </em><tt class="descclassname">G2export_CIF.</tt><tt class="descname">ExportCIF</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#ExportCIF"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.ExportCIF" title="Permalink to this definition">¶</a></dt> |
---|
643 | <dd><p>Used to create a CIF of an entire project</p> |
---|
644 | <table class="docutils field-list" frame="void" rules="none"> |
---|
645 | <col class="field-name" /> |
---|
646 | <col class="field-body" /> |
---|
647 | <tbody valign="top"> |
---|
648 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
---|
649 | </tr> |
---|
650 | </tbody> |
---|
651 | </table> |
---|
652 | <dl class="method"> |
---|
653 | <dt id="G2export_CIF.ExportCIF.Exporter"> |
---|
654 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#ExportCIF.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.ExportCIF.Exporter" title="Permalink to this definition">¶</a></dt> |
---|
655 | <dd><p>Export a CIF. Export can be full or simple (as set by self.mode). |
---|
656 | “simple” skips data, distances & angles, etc. and can only include |
---|
657 | a single phase while “full” is intended for for publication submission.</p> |
---|
658 | </dd></dl> |
---|
659 | |
---|
660 | </dd></dl> |
---|
661 | |
---|
662 | <dl class="class"> |
---|
663 | <dt id="G2export_CIF.ExportDataCIF"> |
---|
664 | <em class="property">class </em><tt class="descclassname">G2export_CIF.</tt><tt class="descname">ExportDataCIF</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#ExportDataCIF"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.ExportDataCIF" title="Permalink to this definition">¶</a></dt> |
---|
665 | <dd><p>Used to create a simple CIF containing diffraction data only. Uses exact same code as |
---|
666 | <a class="reference internal" href="#G2export_CIF.ExportCIF" title="G2export_CIF.ExportCIF"><tt class="xref py py-class docutils literal"><span class="pre">ExportCIF</span></tt></a> except that <cite>self.mode</cite> is set to “simple” and <cite>self.currentExportType</cite> |
---|
667 | is set to “single” or “powder” in <cite>self.InitExport</cite>. Shows up in menus as Data-only CIF.</p> |
---|
668 | <table class="docutils field-list" frame="void" rules="none"> |
---|
669 | <col class="field-name" /> |
---|
670 | <col class="field-body" /> |
---|
671 | <tbody valign="top"> |
---|
672 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
---|
673 | </tr> |
---|
674 | </tbody> |
---|
675 | </table> |
---|
676 | </dd></dl> |
---|
677 | |
---|
678 | <dl class="class"> |
---|
679 | <dt id="G2export_CIF.ExportPhaseCIF"> |
---|
680 | <em class="property">class </em><tt class="descclassname">G2export_CIF.</tt><tt class="descname">ExportPhaseCIF</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#ExportPhaseCIF"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.ExportPhaseCIF" title="Permalink to this definition">¶</a></dt> |
---|
681 | <dd><p>Used to create a simple CIF of at most one phase. Uses exact same code as |
---|
682 | <a class="reference internal" href="#G2export_CIF.ExportCIF" title="G2export_CIF.ExportCIF"><tt class="xref py py-class docutils literal"><span class="pre">ExportCIF</span></tt></a> except that <cite>self.mode</cite> is set to “simple” in <cite>self.InitExport</cite>. |
---|
683 | Shows up in menu as Quick CIF.</p> |
---|
684 | <table class="docutils field-list" frame="void" rules="none"> |
---|
685 | <col class="field-name" /> |
---|
686 | <col class="field-body" /> |
---|
687 | <tbody valign="top"> |
---|
688 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
---|
689 | </tr> |
---|
690 | </tbody> |
---|
691 | </table> |
---|
692 | </dd></dl> |
---|
693 | |
---|
694 | <dl class="function"> |
---|
695 | <dt id="G2export_CIF.LoadCIFdic"> |
---|
696 | <tt class="descclassname">G2export_CIF.</tt><tt class="descname">LoadCIFdic</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#LoadCIFdic"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.LoadCIFdic" title="Permalink to this definition">¶</a></dt> |
---|
697 | <dd><p>Create a composite core+powder CIF lookup dict containing |
---|
698 | information about all items in the CIF dictionaries, loading |
---|
699 | pickled files if possible. The routine looks for files |
---|
700 | named cif_core.cpickle and cif_pd.cpickle in every |
---|
701 | directory in the path and if they are not found, files |
---|
702 | cif_core.dic and/or cif_pd.dic are read.</p> |
---|
703 | <table class="docutils field-list" frame="void" rules="none"> |
---|
704 | <col class="field-name" /> |
---|
705 | <col class="field-body" /> |
---|
706 | <tbody valign="top"> |
---|
707 | <tr class="field-odd field"><th class="field-name">Returns:</th><td class="field-body">the dict with the definitions</td> |
---|
708 | </tr> |
---|
709 | </tbody> |
---|
710 | </table> |
---|
711 | </dd></dl> |
---|
712 | |
---|
713 | <dl class="function"> |
---|
714 | <dt id="G2export_CIF.PickleCIFdict"> |
---|
715 | <tt class="descclassname">G2export_CIF.</tt><tt class="descname">PickleCIFdict</tt><big>(</big><em>fil</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#PickleCIFdict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.PickleCIFdict" title="Permalink to this definition">¶</a></dt> |
---|
716 | <dd><p>Loads a CIF dictionary, cherry picks out the items needed |
---|
717 | by local code and sticks them into a python dict and writes |
---|
718 | that dict out as a cPickle file for later reuse. |
---|
719 | If the write fails a warning message is printed, |
---|
720 | but no exception occurs.</p> |
---|
721 | <table class="docutils field-list" frame="void" rules="none"> |
---|
722 | <col class="field-name" /> |
---|
723 | <col class="field-body" /> |
---|
724 | <tbody valign="top"> |
---|
725 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>fil</strong> (<em>str</em>) – file name of CIF dictionary, will usually end |
---|
726 | in .dic</td> |
---|
727 | </tr> |
---|
728 | <tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body">the dict with the definitions</td> |
---|
729 | </tr> |
---|
730 | </tbody> |
---|
731 | </table> |
---|
732 | </dd></dl> |
---|
733 | |
---|
734 | <dl class="function"> |
---|
735 | <dt id="G2export_CIF.dict2CIF"> |
---|
736 | <tt class="descclassname">G2export_CIF.</tt><tt class="descname">dict2CIF</tt><big>(</big><em>dblk</em>, <em>loopstructure</em>, <em>blockname='Template'</em><big>)</big><a class="reference internal" href="_modules/G2export_CIF.html#dict2CIF"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_CIF.dict2CIF" title="Permalink to this definition">¶</a></dt> |
---|
737 | <dd><p>Create a PyCifRW CIF object containing a single CIF |
---|
738 | block object from a dict and loop structure list.</p> |
---|
739 | <table class="docutils field-list" frame="void" rules="none"> |
---|
740 | <col class="field-name" /> |
---|
741 | <col class="field-body" /> |
---|
742 | <tbody valign="top"> |
---|
743 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple"> |
---|
744 | <li><strong>dblk</strong> – a dict containing values for each CIF item</li> |
---|
745 | <li><strong>loopstructure</strong> (<em>list</em>) – <p>a list of lists containing the contents of |
---|
746 | each loop, as an example:</p> |
---|
747 | <div class="highlight-python"><div class="highlight"><pre><span class="p">[</span> <span class="p">[</span><span class="s">"_a"</span><span class="p">,</span><span class="s">"_b"</span><span class="p">],</span> <span class="p">[</span><span class="s">"_c"</span><span class="p">],</span> <span class="p">[</span><span class="s">"_d_1"</span><span class="p">,</span><span class="s">"_d_2"</span><span class="p">,</span><span class="s">"_d_3"</span><span class="p">]]</span> |
---|
748 | </pre></div> |
---|
749 | </div> |
---|
750 | <p>this describes a CIF with this type of structure:</p> |
---|
751 | <div class="highlight-python"><div class="highlight"><pre>loop_ _a _b <a1> <b1> <a2> ... |
---|
752 | loop_ _c <c1> <c2>... |
---|
753 | loop _d_1 _d_2 _d_3 ... |
---|
754 | </pre></div> |
---|
755 | </div> |
---|
756 | <p>Note that the values for each looped CIF item, such as _a, |
---|
757 | are contained in a list, for example as cifblk[“_a”]</p> |
---|
758 | </li> |
---|
759 | <li><strong>blockname</strong> (<em>str</em>) – an optional name for the CIF block. |
---|
760 | Defaults to ‘Template’</li> |
---|
761 | </ul> |
---|
762 | </td> |
---|
763 | </tr> |
---|
764 | <tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first last">the newly created PyCifRW CIF object</p> |
---|
765 | </td> |
---|
766 | </tr> |
---|
767 | </tbody> |
---|
768 | </table> |
---|
769 | </dd></dl> |
---|
770 | |
---|
771 | </div> |
---|
772 | <span class="target" id="module-G2export_pwdr"></span><div class="section" id="module-g2export-pwdr-export-powder-input-files"> |
---|
773 | <h2><em>Module G2export_pwdr: Export powder input files</em><a class="headerlink" href="#module-g2export-pwdr-export-powder-input-files" title="Permalink to this headline">¶</a></h2> |
---|
774 | <p>Creates files used by GSAS (FXYE) & TOPAS (XYE) as input</p> |
---|
775 | <dl class="class"> |
---|
776 | <dt id="G2export_pwdr.ExportPowderFXYE"> |
---|
777 | <em class="property">class </em><tt class="descclassname">G2export_pwdr.</tt><tt class="descname">ExportPowderFXYE</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_pwdr.html#ExportPowderFXYE"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_pwdr.ExportPowderFXYE" title="Permalink to this definition">¶</a></dt> |
---|
778 | <dd><p>Used to create a FXYE file for a powder data set</p> |
---|
779 | <table class="docutils field-list" frame="void" rules="none"> |
---|
780 | <col class="field-name" /> |
---|
781 | <col class="field-body" /> |
---|
782 | <tbody valign="top"> |
---|
783 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
---|
784 | </tr> |
---|
785 | </tbody> |
---|
786 | </table> |
---|
787 | <dl class="method"> |
---|
788 | <dt id="G2export_pwdr.ExportPowderFXYE.Exporter"> |
---|
789 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_pwdr.html#ExportPowderFXYE.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_pwdr.ExportPowderFXYE.Exporter" title="Permalink to this definition">¶</a></dt> |
---|
790 | <dd><p>Export one or more sets of powder data as FXYE file(s)</p> |
---|
791 | </dd></dl> |
---|
792 | |
---|
793 | <dl class="method"> |
---|
794 | <dt id="G2export_pwdr.ExportPowderFXYE.WriteInstFile"> |
---|
795 | <tt class="descname">WriteInstFile</tt><big>(</big><em>hist</em>, <em>Inst</em><big>)</big><a class="reference internal" href="_modules/G2export_pwdr.html#ExportPowderFXYE.WriteInstFile"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_pwdr.ExportPowderFXYE.WriteInstFile" title="Permalink to this definition">¶</a></dt> |
---|
796 | <dd><p>Write an instrument parameter file</p> |
---|
797 | </dd></dl> |
---|
798 | |
---|
799 | </dd></dl> |
---|
800 | |
---|
801 | <dl class="class"> |
---|
802 | <dt id="G2export_pwdr.ExportPowderXYE"> |
---|
803 | <em class="property">class </em><tt class="descclassname">G2export_pwdr.</tt><tt class="descname">ExportPowderXYE</tt><big>(</big><em>G2frame</em><big>)</big><a class="reference internal" href="_modules/G2export_pwdr.html#ExportPowderXYE"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_pwdr.ExportPowderXYE" title="Permalink to this definition">¶</a></dt> |
---|
804 | <dd><p>Used to create a Topas XYE file for a powder data set</p> |
---|
805 | <table class="docutils field-list" frame="void" rules="none"> |
---|
806 | <col class="field-name" /> |
---|
807 | <col class="field-body" /> |
---|
808 | <tbody valign="top"> |
---|
809 | <tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>G2frame</strong> (<em>wx.Frame</em>) – reference to main GSAS-II frame</td> |
---|
810 | </tr> |
---|
811 | </tbody> |
---|
812 | </table> |
---|
813 | <dl class="method"> |
---|
814 | <dt id="G2export_pwdr.ExportPowderXYE.Exporter"> |
---|
815 | <tt class="descname">Exporter</tt><big>(</big><em>event=None</em><big>)</big><a class="reference internal" href="_modules/G2export_pwdr.html#ExportPowderXYE.Exporter"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#G2export_pwdr.ExportPowderXYE.Exporter" title="Permalink to this definition">¶</a></dt> |
---|
816 | <dd><p>Export one or more sets of powder data as XYE file(s)</p> |
---|
817 | </dd></dl> |
---|
818 | |
---|
819 | </dd></dl> |
---|
820 | |
---|
821 | </div> |
---|
822 | </div> |
---|
823 | |
---|
824 | |
---|
825 | </div> |
---|
826 | </div> |
---|
827 | </div> |
---|
828 | <div class="sphinxsidebar"> |
---|
829 | <div class="sphinxsidebarwrapper"> |
---|
830 | <p class="logo"><a href="index.html"> |
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831 | <img class="logo" src="_static/G2_html_logo.png" alt="Logo"/> |
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832 | </a></p> |
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833 | <h3><a href="index.html">Table Of Contents</a></h3> |
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834 | <ul> |
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835 | <li><a class="reference internal" href="#"><em>GSAS-II Export Modules</em></a><ul> |
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836 | <li><a class="reference internal" href="#module-g2export-examples-examples"><em>Module G2export_examples: Examples</em></a></li> |
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837 | <li><a class="reference internal" href="#module-g2export-csv-spreadsheet-export"><em>Module G2export_csv: Spreadsheet export</em></a></li> |
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838 | <li><a class="reference internal" href="#module-g2export-pdb-macromolecular-export"><em>Module G2export_PDB: Macromolecular export</em></a></li> |
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839 | <li><a class="reference internal" href="#module-g2export-image-2d-image-data-export"><em>Module G2export_image: 2D Image data export</em></a></li> |
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840 | <li><a class="reference internal" href="#module-g2export-map-map-export"><em>Module G2export_map: Map export</em></a></li> |
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841 | <li><a class="reference internal" href="#module-g2export-shelx-examples"><em>Module G2export_shelx: Examples</em></a></li> |
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842 | <li><a class="reference internal" href="#module-g2export-cif-cif-exports"><em>Module G2export_CIF: CIF Exports</em></a></li> |
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843 | <li><a class="reference internal" href="#module-g2export-pwdr-export-powder-input-files"><em>Module G2export_pwdr: Export powder input files</em></a></li> |
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844 | </ul> |
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845 | </li> |
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846 | </ul> |
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847 | |
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848 | <h4>Previous topic</h4> |
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849 | <p class="topless"><a href="GSASIIscripts.html" |
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850 | title="previous chapter"><em>GSAS-II Scripts</em></a></p> |
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851 | <h4>Next topic</h4> |
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852 | <p class="topless"><a href="imports.html" |
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853 | title="next chapter"><em>GSAS-II Import Modules</em></a></p> |
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854 | <h3>This Page</h3> |
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855 | <ul class="this-page-menu"> |
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881 | >index</a></li> |
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895 | © Copyright 2013, Von Dreele and Toby for Argonne National Laboratory. |
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