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50 | <h1>Source code for G2export_examples</h1><div class="highlight"><pre> |
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51 | <span class="c">#!/usr/bin/env python</span> |
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52 | <span class="c"># -*- coding: utf-8 -*-</span> |
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53 | <span class="c">########### SVN repository information ###################</span> |
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54 | <span class="c"># $Date: 2015-10-10 11:58:12 -0500 (Sat, 10 Oct 2015) $</span> |
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55 | <span class="c"># $Author: toby $</span> |
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56 | <span class="c"># $Revision: 1997 $</span> |
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57 | <span class="c"># $URL: https://subversion.xray.aps.anl.gov/pyGSAS/trunk/exports/G2export_examples.py $</span> |
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58 | <span class="c"># $Id: G2export_examples.py 1997 2015-10-10 16:58:12Z toby $</span> |
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59 | <span class="c">########### SVN repository information ###################</span> |
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60 | <span class="sd">'''</span> |
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61 | <span class="sd">*Module G2export_examples: Examples*</span> |
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62 | <span class="sd">-------------------------------------------</span> |
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63 | |
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64 | <span class="sd">Code to demonstrate how GSAS-II data export routines are created. The</span> |
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65 | <span class="sd">classes defined here, :class:`ExportPhaseText`, </span> |
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66 | <span class="sd">:class:`ExportSingleText`, :class:`ExportPowderReflText`, </span> |
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67 | <span class="sd">and :class:`ExportPowderText` each demonstrate a different type</span> |
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68 | <span class="sd">of export. Also see :class:`G2export_map.ExportMapASCII` for an</span> |
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69 | <span class="sd">example of a map export.</span> |
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70 | |
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71 | <span class="sd">'''</span> |
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72 | <span class="kn">import</span> <span class="nn">os.path</span> |
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73 | <span class="kn">import</span> <span class="nn">numpy</span> <span class="kn">as</span> <span class="nn">np</span> |
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74 | <span class="kn">import</span> <span class="nn">GSASIIpath</span> |
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75 | <span class="n">GSASIIpath</span><span class="o">.</span><span class="n">SetVersionNumber</span><span class="p">(</span><span class="s">"$Revision: 1997 $"</span><span class="p">)</span> |
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76 | <span class="kn">import</span> <span class="nn">GSASIIIO</span> <span class="kn">as</span> <span class="nn">G2IO</span> |
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77 | <span class="kn">import</span> <span class="nn">GSASIIpy3</span> <span class="kn">as</span> <span class="nn">G2py3</span> |
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78 | <span class="c">#import GSASIIgrid as G2gd</span> |
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79 | <span class="c">#import GSASIIstrIO as G2stIO</span> |
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80 | <span class="kn">import</span> <span class="nn">GSASIImath</span> <span class="kn">as</span> <span class="nn">G2mth</span> |
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81 | <span class="kn">import</span> <span class="nn">GSASIIpwd</span> <span class="kn">as</span> <span class="nn">G2pwd</span> |
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82 | <span class="c">#import GSASIIlattice as G2lat</span> |
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83 | <span class="c">#import GSASIIspc as G2spc</span> |
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84 | <span class="c">#import GSASIIphsGUI as G2pg</span> |
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85 | <span class="c">#import GSASIIstrMain as G2stMn</span> |
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86 | |
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87 | <div class="viewcode-block" id="ExportPhaseText"><a class="viewcode-back" href="../exports.html#G2export_examples.ExportPhaseText">[docs]</a><span class="k">class</span> <span class="nc">ExportPhaseText</span><span class="p">(</span><span class="n">G2IO</span><span class="o">.</span><span class="n">ExportBaseclass</span><span class="p">):</span> |
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88 | <span class="sd">'''Used to create a text file for a phase</span> |
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89 | |
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90 | <span class="sd"> :param wx.Frame G2frame: reference to main GSAS-II frame</span> |
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91 | <span class="sd"> '''</span> |
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92 | <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">G2frame</span><span class="p">):</span> |
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93 | <span class="nb">super</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">__class__</span><span class="p">,</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="n">__init__</span><span class="p">(</span> <span class="c"># fancy way to say <parentclass>.__init__</span> |
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94 | <span class="n">G2frame</span><span class="o">=</span><span class="n">G2frame</span><span class="p">,</span> |
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95 | <span class="n">formatName</span> <span class="o">=</span> <span class="s">'Text file'</span><span class="p">,</span> |
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96 | <span class="n">extension</span><span class="o">=</span><span class="s">'.txt'</span><span class="p">,</span> |
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97 | <span class="n">longFormatName</span> <span class="o">=</span> <span class="s">'Export phase as text file'</span> |
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98 | <span class="p">)</span> |
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99 | <span class="bp">self</span><span class="o">.</span><span class="n">exporttype</span> <span class="o">=</span> <span class="p">[</span><span class="s">'phase'</span><span class="p">]</span> |
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100 | <span class="bp">self</span><span class="o">.</span><span class="n">multiple</span> <span class="o">=</span> <span class="bp">True</span> <span class="c"># allow multiple phases to be selected</span> |
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101 | |
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102 | <div class="viewcode-block" id="ExportPhaseText.Exporter"><a class="viewcode-back" href="../exports.html#G2export_examples.ExportPhaseText.Exporter">[docs]</a> <span class="k">def</span> <span class="nf">Exporter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">event</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> |
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103 | <span class="sd">'''Export a phase as a text file</span> |
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104 | <span class="sd"> '''</span> |
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105 | <span class="c"># the export process starts here</span> |
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106 | <span class="bp">self</span><span class="o">.</span><span class="n">InitExport</span><span class="p">(</span><span class="n">event</span><span class="p">)</span> |
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107 | <span class="c"># load all of the tree into a set of dicts</span> |
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108 | <span class="bp">self</span><span class="o">.</span><span class="n">loadTree</span><span class="p">()</span> |
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109 | <span class="c"># create a dict with refined values and their uncertainties</span> |
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110 | <span class="bp">self</span><span class="o">.</span><span class="n">loadParmDict</span><span class="p">()</span> |
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111 | <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">ExportSelect</span><span class="p">():</span> <span class="k">return</span> <span class="c"># set export parameters; prompt for file name</span> |
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112 | <span class="bp">self</span><span class="o">.</span><span class="n">OpenFile</span><span class="p">()</span> |
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113 | <span class="c"># if more than one format is selected, put them into a single file</span> |
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114 | <span class="k">for</span> <span class="n">phasenam</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">phasenam</span><span class="p">:</span> |
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115 | <span class="n">phasedict</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">Phases</span><span class="p">[</span><span class="n">phasenam</span><span class="p">]</span> <span class="c"># pointer to current phase info </span> |
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116 | <span class="n">i</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">Phases</span><span class="p">[</span><span class="n">phasenam</span><span class="p">][</span><span class="s">'pId'</span><span class="p">]</span> |
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117 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="s">'</span><span class="se">\n</span><span class="s">'</span><span class="o">+</span><span class="mi">80</span><span class="o">*</span><span class="s">'='</span><span class="p">)</span> |
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118 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="s">"Phase "</span><span class="o">+</span><span class="nb">str</span><span class="p">(</span><span class="n">phasenam</span><span class="p">)</span><span class="o">+</span><span class="s">" from "</span><span class="o">+</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">G2frame</span><span class="o">.</span><span class="n">GSASprojectfile</span><span class="p">))</span> |
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119 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="s">"</span><span class="se">\n</span><span class="s">Space group = "</span><span class="o">+</span><span class="nb">str</span><span class="p">(</span><span class="n">phasedict</span><span class="p">[</span><span class="s">'General'</span><span class="p">][</span><span class="s">'SGData'</span><span class="p">][</span><span class="s">'SpGrp'</span><span class="p">]</span><span class="o">.</span><span class="n">strip</span><span class="p">()))</span> |
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120 | <span class="c"># get cell parameters & print them</span> |
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121 | <span class="n">cellList</span><span class="p">,</span><span class="n">cellSig</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">GetCell</span><span class="p">(</span><span class="n">phasenam</span><span class="p">)</span> |
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122 | <span class="n">prevsig</span> <span class="o">=</span> <span class="mi">0</span> |
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123 | <span class="k">for</span> <span class="n">lbl</span><span class="p">,</span><span class="n">defsig</span><span class="p">,</span><span class="n">val</span><span class="p">,</span><span class="n">sig</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span> |
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124 | <span class="p">[</span><span class="s">'a'</span><span class="p">,</span><span class="s">'b'</span><span class="p">,</span><span class="s">'c'</span><span class="p">,</span><span class="s">'alpha'</span><span class="p">,</span><span class="s">'beta '</span><span class="p">,</span><span class="s">'gamma'</span><span class="p">,</span><span class="s">'volume'</span><span class="p">],</span> |
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125 | <span class="mi">3</span><span class="o">*</span><span class="p">[</span><span class="o">-</span><span class="mf">0.00001</span><span class="p">]</span> <span class="o">+</span> <span class="mi">3</span><span class="o">*</span><span class="p">[</span><span class="o">-</span><span class="mf">0.001</span><span class="p">]</span> <span class="o">+</span> <span class="p">[</span><span class="o">-</span><span class="mf">0.01</span><span class="p">],</span> <span class="c"># sign values to use when no sigma</span> |
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126 | <span class="n">cellList</span><span class="p">,</span><span class="n">cellSig</span> |
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127 | <span class="p">):</span> |
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128 | <span class="k">if</span> <span class="n">sig</span><span class="p">:</span> |
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129 | <span class="n">txt</span> <span class="o">=</span> <span class="n">G2mth</span><span class="o">.</span><span class="n">ValEsd</span><span class="p">(</span><span class="n">val</span><span class="p">,</span><span class="n">sig</span><span class="p">)</span> |
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130 | <span class="n">prevsig</span> <span class="o">=</span> <span class="o">-</span><span class="n">sig</span> <span class="c"># use this as the significance for next value</span> |
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131 | <span class="k">else</span><span class="p">:</span> |
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132 | <span class="n">txt</span> <span class="o">=</span> <span class="n">G2mth</span><span class="o">.</span><span class="n">ValEsd</span><span class="p">(</span><span class="n">val</span><span class="p">,</span><span class="nb">min</span><span class="p">(</span><span class="n">defsig</span><span class="p">,</span><span class="n">prevsig</span><span class="p">),</span><span class="bp">True</span><span class="p">)</span> |
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133 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">lbl</span><span class="o">+</span><span class="s">' = '</span><span class="o">+</span><span class="n">txt</span><span class="p">)</span> |
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134 | <span class="c"># get atoms and print them in nice columns</span> |
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135 | <span class="n">AtomsList</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">GetAtoms</span><span class="p">(</span><span class="n">phasenam</span><span class="p">)</span> |
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136 | <span class="n">fmt</span> <span class="o">=</span> <span class="s">"{:8s} {:4s} {:4s} {:12s} {:12s} {:12s} {:10s} {:10s}"</span> |
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137 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="s">'</span><span class="se">\n</span><span class="s">Atoms</span><span class="se">\n</span><span class="s">'</span><span class="o">+</span><span class="mi">80</span><span class="o">*</span><span class="s">'-'</span><span class="p">)</span> |
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138 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s">"label"</span><span class="p">,</span><span class="s">"elem"</span><span class="p">,</span><span class="s">"mult"</span><span class="p">,</span><span class="s">"x"</span><span class="p">,</span><span class="s">"y"</span><span class="p">,</span><span class="s">"z"</span><span class="p">,</span><span class="s">"frac"</span><span class="p">,</span><span class="s">"Uiso"</span><span class="p">))</span> |
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139 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="mi">80</span><span class="o">*</span><span class="s">'-'</span><span class="p">)</span> |
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140 | <span class="n">aniso</span> <span class="o">=</span> <span class="bp">False</span> |
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141 | <span class="k">for</span> <span class="n">lbl</span><span class="p">,</span><span class="n">typ</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span><span class="n">xyz</span><span class="p">,</span><span class="n">td</span> <span class="ow">in</span> <span class="n">AtomsList</span><span class="p">:</span> |
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142 | <span class="n">vals</span> <span class="o">=</span> <span class="p">[</span><span class="n">lbl</span><span class="p">,</span><span class="n">typ</span><span class="p">,</span><span class="nb">str</span><span class="p">(</span><span class="n">mult</span><span class="p">)]</span> |
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143 | <span class="k">if</span> <span class="n">xyz</span><span class="p">[</span><span class="mi">3</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span> <span class="k">continue</span> |
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144 | <span class="k">for</span> <span class="n">val</span><span class="p">,</span><span class="n">sig</span> <span class="ow">in</span> <span class="n">xyz</span><span class="p">:</span> |
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145 | <span class="n">vals</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">G2mth</span><span class="o">.</span><span class="n">ValEsd</span><span class="p">(</span><span class="n">val</span><span class="p">,</span><span class="n">sig</span><span class="p">))</span> |
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146 | <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">td</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span> |
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147 | <span class="n">vals</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">G2mth</span><span class="o">.</span><span class="n">ValEsd</span><span class="p">(</span><span class="n">td</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span><span class="n">td</span><span class="p">[</span><span class="mi">0</span><span class="p">][</span><span class="mi">1</span><span class="p">]))</span> |
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148 | <span class="k">else</span><span class="p">:</span> |
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149 | <span class="n">vals</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s">"aniso"</span><span class="p">)</span> |
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150 | <span class="n">aniso</span> <span class="o">=</span> <span class="bp">True</span> |
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151 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="o">*</span><span class="n">vals</span><span class="p">))</span> |
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152 | <span class="c"># print anisotropic values, if any</span> |
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153 | <span class="k">if</span> <span class="n">aniso</span><span class="p">:</span> |
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154 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="s">'</span><span class="se">\n</span><span class="s">Anisotropic parameters'</span><span class="p">)</span> |
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155 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="mi">80</span><span class="o">*</span><span class="s">'-'</span><span class="p">)</span> |
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156 | <span class="n">fmt</span> <span class="o">=</span> <span class="s">"{:8s} {:4s} {:10s} {:10s} {:10s} {:10s} {:10s} {:10s}"</span> |
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157 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s">"label"</span><span class="p">,</span><span class="s">"elem"</span><span class="p">,</span><span class="s">'U11'</span><span class="p">,</span><span class="s">'U22'</span><span class="p">,</span><span class="s">'U33'</span><span class="p">,</span><span class="s">'U12'</span><span class="p">,</span><span class="s">'U13'</span><span class="p">,</span><span class="s">'U23'</span><span class="p">))</span> |
---|
158 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="mi">80</span><span class="o">*</span><span class="s">'-'</span><span class="p">)</span> |
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159 | <span class="k">for</span> <span class="n">lbl</span><span class="p">,</span><span class="n">typ</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span><span class="n">xyz</span><span class="p">,</span><span class="n">td</span> <span class="ow">in</span> <span class="n">AtomsList</span><span class="p">:</span> |
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160 | <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">td</span><span class="p">)</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span> <span class="k">continue</span> |
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161 | <span class="k">if</span> <span class="n">xyz</span><span class="p">[</span><span class="mi">3</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span> <span class="k">continue</span> |
---|
162 | <span class="n">vals</span> <span class="o">=</span> <span class="p">[</span><span class="n">lbl</span><span class="p">,</span><span class="n">typ</span><span class="p">]</span> |
---|
163 | <span class="k">for</span> <span class="n">val</span><span class="p">,</span><span class="n">sig</span> <span class="ow">in</span> <span class="n">td</span><span class="p">:</span> |
---|
164 | <span class="n">vals</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">G2mth</span><span class="o">.</span><span class="n">ValEsd</span><span class="p">(</span><span class="n">val</span><span class="p">,</span><span class="n">sig</span><span class="p">))</span> |
---|
165 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="o">*</span><span class="n">vals</span><span class="p">))</span> |
---|
166 | <span class="k">print</span><span class="p">(</span><span class="s">'Phase '</span><span class="o">+</span><span class="nb">str</span><span class="p">(</span><span class="n">phasenam</span><span class="p">)</span><span class="o">+</span><span class="s">' written to file '</span><span class="o">+</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fullpath</span><span class="p">))</span> |
---|
167 | <span class="bp">self</span><span class="o">.</span><span class="n">CloseFile</span><span class="p">()</span> |
---|
168 | </div></div> |
---|
169 | <div class="viewcode-block" id="ExportPowderText"><a class="viewcode-back" href="../exports.html#G2export_examples.ExportPowderText">[docs]</a><span class="k">class</span> <span class="nc">ExportPowderText</span><span class="p">(</span><span class="n">G2IO</span><span class="o">.</span><span class="n">ExportBaseclass</span><span class="p">):</span> |
---|
170 | <span class="sd">'''Used to create a text file for a powder data set</span> |
---|
171 | |
---|
172 | <span class="sd"> :param wx.Frame G2frame: reference to main GSAS-II frame</span> |
---|
173 | <span class="sd"> '''</span> |
---|
174 | <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">G2frame</span><span class="p">):</span> |
---|
175 | <span class="nb">super</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">__class__</span><span class="p">,</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="n">__init__</span><span class="p">(</span> <span class="c"># fancy way to say <parentclass>.__init__</span> |
---|
176 | <span class="n">G2frame</span><span class="o">=</span><span class="n">G2frame</span><span class="p">,</span> |
---|
177 | <span class="n">formatName</span> <span class="o">=</span> <span class="s">'Text file'</span><span class="p">,</span> |
---|
178 | <span class="n">extension</span><span class="o">=</span><span class="s">'.txt'</span><span class="p">,</span> |
---|
179 | <span class="n">longFormatName</span> <span class="o">=</span> <span class="s">'Export powder data as text file'</span> |
---|
180 | <span class="p">)</span> |
---|
181 | <span class="bp">self</span><span class="o">.</span><span class="n">exporttype</span> <span class="o">=</span> <span class="p">[</span><span class="s">'powder'</span><span class="p">]</span> |
---|
182 | <span class="bp">self</span><span class="o">.</span><span class="n">multiple</span> <span class="o">=</span> <span class="bp">False</span> <span class="c"># only allow one histogram to be selected</span> |
---|
183 | |
---|
184 | <span class="k">def</span> <span class="nf">Writer</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">TreeName</span><span class="p">,</span><span class="n">filename</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> |
---|
185 | <span class="bp">self</span><span class="o">.</span><span class="n">OpenFile</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span> |
---|
186 | <span class="n">histblk</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">Histograms</span><span class="p">[</span><span class="n">TreeName</span><span class="p">]</span> |
---|
187 | <span class="n">hfmt</span> <span class="o">=</span> <span class="mi">5</span><span class="o">*</span><span class="s">"{:12s} "</span> |
---|
188 | <span class="n">digitList</span> <span class="o">=</span> <span class="mi">2</span><span class="o">*</span><span class="p">((</span><span class="mi">13</span><span class="p">,</span><span class="mi">3</span><span class="p">),)</span> <span class="o">+</span> <span class="p">((</span><span class="mi">13</span><span class="p">,</span><span class="mi">5</span><span class="p">),)</span> <span class="o">+</span> <span class="mi">2</span><span class="o">*</span><span class="p">((</span><span class="mi">13</span><span class="p">,</span><span class="mi">3</span><span class="p">),)</span> |
---|
189 | |
---|
190 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">hfmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s">"x"</span><span class="p">,</span><span class="s">"y_obs"</span><span class="p">,</span><span class="s">"weight"</span><span class="p">,</span><span class="s">"y_calc"</span><span class="p">,</span><span class="s">"y_bkg"</span><span class="p">))</span> |
---|
191 | <span class="k">for</span> <span class="n">vallist</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">histblk</span><span class="p">[</span><span class="s">'Data'</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span> |
---|
192 | <span class="n">histblk</span><span class="p">[</span><span class="s">'Data'</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span> |
---|
193 | <span class="n">histblk</span><span class="p">[</span><span class="s">'Data'</span><span class="p">][</span><span class="mi">2</span><span class="p">],</span> |
---|
194 | <span class="n">histblk</span><span class="p">[</span><span class="s">'Data'</span><span class="p">][</span><span class="mi">3</span><span class="p">],</span> |
---|
195 | <span class="n">histblk</span><span class="p">[</span><span class="s">'Data'</span><span class="p">][</span><span class="mi">4</span><span class="p">],</span> |
---|
196 | <span class="c">#histblk['Data'][5],</span> |
---|
197 | <span class="p">):</span> |
---|
198 | <span class="n">strg</span> <span class="o">=</span> <span class="s">''</span> |
---|
199 | <span class="k">for</span> <span class="n">val</span><span class="p">,</span><span class="n">digits</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">vallist</span><span class="p">,</span><span class="n">digitList</span><span class="p">):</span> |
---|
200 | <span class="n">strg</span> <span class="o">+=</span> <span class="n">G2py3</span><span class="o">.</span><span class="n">FormatPadValue</span><span class="p">(</span><span class="n">val</span><span class="p">,</span><span class="n">digits</span><span class="p">)</span> |
---|
201 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">strg</span><span class="p">)</span> |
---|
202 | <span class="bp">self</span><span class="o">.</span><span class="n">CloseFile</span><span class="p">()</span> |
---|
203 | |
---|
204 | <div class="viewcode-block" id="ExportPowderText.Exporter"><a class="viewcode-back" href="../exports.html#G2export_examples.ExportPowderText.Exporter">[docs]</a> <span class="k">def</span> <span class="nf">Exporter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">event</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> |
---|
205 | <span class="sd">'''Export a set of powder data as a text file</span> |
---|
206 | <span class="sd"> '''</span> |
---|
207 | <span class="c"># the export process starts here</span> |
---|
208 | <span class="bp">self</span><span class="o">.</span><span class="n">InitExport</span><span class="p">(</span><span class="n">event</span><span class="p">)</span> |
---|
209 | <span class="c"># load all of the tree into a set of dicts</span> |
---|
210 | <span class="bp">self</span><span class="o">.</span><span class="n">loadTree</span><span class="p">()</span> |
---|
211 | <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">ExportSelect</span><span class="p">(</span> <span class="c"># set export parameters</span> |
---|
212 | <span class="n">AskFile</span><span class="o">=</span><span class="s">'default'</span> <span class="c"># base name on the GPX file name</span> |
---|
213 | <span class="p">):</span> <span class="k">return</span> |
---|
214 | <span class="n">hist</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">histnam</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="c"># there should only be one histogram, in any case take the 1st</span> |
---|
215 | <span class="bp">self</span><span class="o">.</span><span class="n">Writer</span><span class="p">(</span><span class="n">hist</span><span class="p">)</span> |
---|
216 | <span class="k">print</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">hist</span><span class="p">)</span><span class="o">+</span><span class="s">' written to file '</span><span class="o">+</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fullpath</span><span class="p">))</span> |
---|
217 | </div></div> |
---|
218 | <div class="viewcode-block" id="ExportPowderReflText"><a class="viewcode-back" href="../exports.html#G2export_examples.ExportPowderReflText">[docs]</a><span class="k">class</span> <span class="nc">ExportPowderReflText</span><span class="p">(</span><span class="n">G2IO</span><span class="o">.</span><span class="n">ExportBaseclass</span><span class="p">):</span> |
---|
219 | <span class="sd">'''Used to create a text file of reflections from a powder data set</span> |
---|
220 | |
---|
221 | <span class="sd"> :param wx.Frame G2frame: reference to main GSAS-II frame</span> |
---|
222 | <span class="sd"> '''</span> |
---|
223 | <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">G2frame</span><span class="p">):</span> |
---|
224 | <span class="nb">super</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">__class__</span><span class="p">,</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="n">__init__</span><span class="p">(</span> <span class="c"># fancy way to say <parentclass>.__init__</span> |
---|
225 | <span class="n">G2frame</span><span class="o">=</span><span class="n">G2frame</span><span class="p">,</span> |
---|
226 | <span class="n">formatName</span> <span class="o">=</span> <span class="s">'reflection list as text'</span><span class="p">,</span> |
---|
227 | <span class="n">extension</span><span class="o">=</span><span class="s">'.txt'</span><span class="p">,</span> |
---|
228 | <span class="n">longFormatName</span> <span class="o">=</span> <span class="s">'Export powder reflection list as a text file'</span> |
---|
229 | <span class="p">)</span> |
---|
230 | <span class="bp">self</span><span class="o">.</span><span class="n">exporttype</span> <span class="o">=</span> <span class="p">[</span><span class="s">'powder'</span><span class="p">]</span> |
---|
231 | <span class="bp">self</span><span class="o">.</span><span class="n">multiple</span> <span class="o">=</span> <span class="bp">False</span> <span class="c"># only allow one histogram to be selected</span> |
---|
232 | |
---|
233 | <div class="viewcode-block" id="ExportPowderReflText.Exporter"><a class="viewcode-back" href="../exports.html#G2export_examples.ExportPowderReflText.Exporter">[docs]</a> <span class="k">def</span> <span class="nf">Exporter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">event</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> |
---|
234 | <span class="sd">'''Export a set of powder reflections as a text file</span> |
---|
235 | <span class="sd"> '''</span> |
---|
236 | <span class="bp">self</span><span class="o">.</span><span class="n">InitExport</span><span class="p">(</span><span class="n">event</span><span class="p">)</span> |
---|
237 | <span class="c"># load all of the tree into a set of dicts</span> |
---|
238 | <span class="bp">self</span><span class="o">.</span><span class="n">loadTree</span><span class="p">()</span> |
---|
239 | <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">ExportSelect</span><span class="p">(</span> <span class="c"># set export parameters</span> |
---|
240 | <span class="n">AskFile</span><span class="o">=</span><span class="s">'default'</span> <span class="c"># base name on the GPX file name</span> |
---|
241 | <span class="p">):</span> <span class="k">return</span> |
---|
242 | <span class="bp">self</span><span class="o">.</span><span class="n">OpenFile</span><span class="p">()</span> |
---|
243 | <span class="n">hist</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">histnam</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="c"># there should only be one histogram, in any case take the 1st</span> |
---|
244 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="s">'</span><span class="se">\n</span><span class="s">Histogram '</span><span class="o">+</span><span class="n">hist</span><span class="p">)</span> |
---|
245 | <span class="n">histblk</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">Histograms</span><span class="p">[</span><span class="n">hist</span><span class="p">]</span> |
---|
246 | <span class="k">for</span> <span class="n">phasenam</span> <span class="ow">in</span> <span class="n">histblk</span><span class="p">[</span><span class="s">'Reflection Lists'</span><span class="p">]:</span> |
---|
247 | <span class="n">phasDict</span> <span class="o">=</span> <span class="n">histblk</span><span class="p">[</span><span class="s">'Reflection Lists'</span><span class="p">][</span><span class="n">phasenam</span><span class="p">]</span> |
---|
248 | <span class="n">tname</span> <span class="o">=</span> <span class="p">{</span><span class="s">'T'</span><span class="p">:</span><span class="s">'TOF'</span><span class="p">,</span><span class="s">'C'</span><span class="p">:</span><span class="s">'2-theta'</span><span class="p">}[</span><span class="n">phasDict</span><span class="p">[</span><span class="s">'Type'</span><span class="p">][</span><span class="mi">2</span><span class="p">]]</span> |
---|
249 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="s">'</span><span class="se">\n</span><span class="s">Phase '</span><span class="o">+</span><span class="nb">str</span><span class="p">(</span><span class="n">phasenam</span><span class="p">))</span> |
---|
250 | <span class="k">if</span> <span class="n">phasDict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s">'Super'</span><span class="p">,</span><span class="bp">False</span><span class="p">):</span> |
---|
251 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="mi">96</span><span class="o">*</span><span class="s">'='</span><span class="p">)</span> |
---|
252 | <span class="n">hklfmt</span> <span class="o">=</span> <span class="s">"{:.0f},{:.0f},{:.0f},{:.0f}"</span> |
---|
253 | <span class="n">hfmt</span> <span class="o">=</span> <span class="s">"{:>10s} {:>8s} {:>12s} {:>12s} {:>7s} {:>6s} {:>8s} {:>8s} {:>8s} {:>8s}"</span> |
---|
254 | <span class="k">if</span> <span class="s">'T'</span> <span class="ow">in</span> <span class="n">phasDict</span><span class="p">[</span><span class="s">'Type'</span><span class="p">]:</span> |
---|
255 | <span class="n">fmt</span> <span class="o">=</span> <span class="s">"{:>10s} {:8.3f} {:12.3f} {:12.3f} {:7.2f} {:6.0f} {:8.3f} {:8.3f} {:8.3f} {:8.4f}"</span> |
---|
256 | <span class="k">else</span><span class="p">:</span> |
---|
257 | <span class="n">fmt</span> <span class="o">=</span> <span class="s">"{:>10s} {:8.3f} {:12.3f} {:12.3f} {:7.2f} {:6.0f} {:8.5f} {:8.5f} {:8.5f} {:8.4f}"</span> |
---|
258 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">hfmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s">"h,k,l,m"</span><span class="p">,</span><span class="n">tname</span><span class="p">,</span><span class="s">"F_obs"</span><span class="p">,</span><span class="s">"F_calc"</span><span class="p">,</span><span class="s">"phase"</span><span class="p">,</span><span class="s">"mult"</span><span class="p">,</span><span class="s">"sig"</span><span class="p">,</span><span class="s">"gam"</span><span class="p">,</span><span class="s">"FWHM"</span><span class="p">,</span><span class="s">"Prfo"</span><span class="p">))</span> |
---|
259 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="mi">96</span><span class="o">*</span><span class="s">'='</span><span class="p">)</span> |
---|
260 | <span class="n">refList</span> <span class="o">=</span> <span class="n">phasDict</span><span class="p">[</span><span class="s">'RefList'</span><span class="p">]</span> |
---|
261 | <span class="k">for</span> <span class="n">refItem</span> <span class="ow">in</span> <span class="n">refList</span><span class="p">:</span> |
---|
262 | <span class="k">if</span> <span class="s">'T'</span> <span class="ow">in</span> <span class="n">phasDict</span><span class="p">[</span><span class="s">'Type'</span><span class="p">]:</span> |
---|
263 | <span class="n">h</span><span class="p">,</span><span class="n">k</span><span class="p">,</span><span class="n">l</span><span class="p">,</span><span class="n">m</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span><span class="n">dsp</span><span class="p">,</span><span class="n">pos</span><span class="p">,</span><span class="n">sig</span><span class="p">,</span><span class="n">gam</span><span class="p">,</span><span class="n">Fobs</span><span class="p">,</span><span class="n">Fcalc</span><span class="p">,</span><span class="n">phase</span><span class="p">,</span><span class="n">x</span><span class="p">,</span><span class="n">x</span><span class="p">,</span><span class="n">x</span><span class="p">,</span><span class="n">x</span><span class="p">,</span><span class="n">prfo</span> <span class="o">=</span> <span class="n">refItem</span><span class="p">[:</span><span class="mi">17</span><span class="p">]</span> |
---|
264 | <span class="n">FWHM</span> <span class="o">=</span> <span class="mf">2.</span><span class="o">*</span><span class="n">G2pwd</span><span class="o">.</span><span class="n">getgamFW</span><span class="p">(</span><span class="n">gam</span><span class="p">,</span><span class="n">sig</span><span class="p">)</span> |
---|
265 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">hklfmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">h</span><span class="p">,</span><span class="n">k</span><span class="p">,</span><span class="n">l</span><span class="p">,</span><span class="n">m</span><span class="p">),</span><span class="n">pos</span><span class="p">,</span><span class="n">Fobs</span><span class="p">,</span><span class="n">Fcalc</span><span class="p">,</span><span class="n">phase</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span><span class="n">sig</span><span class="p">,</span><span class="n">gam</span><span class="p">,</span><span class="n">FWHM</span><span class="p">,</span><span class="n">prfo</span><span class="p">))</span> |
---|
266 | <span class="k">else</span><span class="p">:</span> |
---|
267 | <span class="n">h</span><span class="p">,</span><span class="n">k</span><span class="p">,</span><span class="n">l</span><span class="p">,</span><span class="n">m</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span><span class="n">dsp</span><span class="p">,</span><span class="n">pos</span><span class="p">,</span><span class="n">sig</span><span class="p">,</span><span class="n">gam</span><span class="p">,</span><span class="n">Fobs</span><span class="p">,</span><span class="n">Fcalc</span><span class="p">,</span><span class="n">phase</span><span class="p">,</span><span class="n">x</span><span class="p">,</span><span class="n">prfo</span> <span class="o">=</span> <span class="n">refItem</span><span class="p">[:</span><span class="mi">14</span><span class="p">]</span> |
---|
268 | <span class="n">FWHM</span> <span class="o">=</span> <span class="mf">2.</span><span class="o">*</span><span class="n">G2pwd</span><span class="o">.</span><span class="n">getgamFW</span><span class="p">(</span><span class="n">gam</span><span class="p">,</span><span class="n">sig</span><span class="p">)</span> |
---|
269 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">hklfmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">h</span><span class="p">,</span><span class="n">k</span><span class="p">,</span><span class="n">l</span><span class="p">,</span><span class="n">m</span><span class="p">),</span><span class="n">pos</span><span class="p">,</span><span class="n">Fobs</span><span class="p">,</span><span class="n">Fcalc</span><span class="p">,</span><span class="n">phase</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span> \ |
---|
270 | <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="n">sig</span><span class="p">,</span><span class="mf">0.0001</span><span class="p">))</span><span class="o">/</span><span class="mf">100.</span><span class="p">,</span><span class="n">gam</span><span class="o">/</span><span class="mf">100.</span><span class="p">,</span><span class="n">FWHM</span><span class="o">/</span><span class="mf">100.</span><span class="p">,</span><span class="n">prfo</span><span class="p">))</span> |
---|
271 | <span class="k">else</span><span class="p">:</span> |
---|
272 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="mi">94</span><span class="o">*</span><span class="s">'='</span><span class="p">)</span> |
---|
273 | <span class="n">hklfmt</span> <span class="o">=</span> <span class="s">"{:.0f},{:.0f},{:.0f}"</span> |
---|
274 | <span class="n">hfmt</span> <span class="o">=</span> <span class="s">"{:>8s} {:>8s} {:>12s} {:>12s} {:>7s} {:>6s} {:>8s} {:>8s} {:>8s} {:>8s}"</span> |
---|
275 | <span class="k">if</span> <span class="s">'T'</span> <span class="ow">in</span> <span class="n">phasDict</span><span class="p">[</span><span class="s">'Type'</span><span class="p">]:</span> |
---|
276 | <span class="n">fmt</span> <span class="o">=</span> <span class="s">"{:>8s} {:8.3f} {:12.3f} {:12.3f} {:7.2f} {:6.0f} {:8.3f} {:8.3f} {:8.3f} {:8.4f}"</span> |
---|
277 | <span class="k">else</span><span class="p">:</span> |
---|
278 | <span class="n">fmt</span> <span class="o">=</span> <span class="s">"{:>8s} {:8.3f} {:12.3f} {:12.3f} {:7.2f} {:6.0f} {:8.5f} {:8.5f} {:8.5f} {:8.4f}"</span> |
---|
279 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">hfmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s">"h,k,l"</span><span class="p">,</span><span class="n">tname</span><span class="p">,</span><span class="s">"F_obs"</span><span class="p">,</span><span class="s">"F_calc"</span><span class="p">,</span><span class="s">"phase"</span><span class="p">,</span><span class="s">"mult"</span><span class="p">,</span><span class="s">"sig"</span><span class="p">,</span><span class="s">"gam"</span><span class="p">,</span><span class="s">"FWHM"</span><span class="p">,</span><span class="s">"Prfo"</span><span class="p">))</span> |
---|
280 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="mi">94</span><span class="o">*</span><span class="s">'='</span><span class="p">)</span> |
---|
281 | <span class="n">refList</span> <span class="o">=</span> <span class="n">phasDict</span><span class="p">[</span><span class="s">'RefList'</span><span class="p">]</span> |
---|
282 | <span class="k">for</span> <span class="n">refItem</span> <span class="ow">in</span> <span class="n">refList</span><span class="p">:</span> |
---|
283 | <span class="k">if</span> <span class="s">'T'</span> <span class="ow">in</span> <span class="n">phasDict</span><span class="p">[</span><span class="s">'Type'</span><span class="p">]:</span> |
---|
284 | <span class="n">h</span><span class="p">,</span><span class="n">k</span><span class="p">,</span><span class="n">l</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span><span class="n">dsp</span><span class="p">,</span><span class="n">pos</span><span class="p">,</span><span class="n">sig</span><span class="p">,</span><span class="n">gam</span><span class="p">,</span><span class="n">Fobs</span><span class="p">,</span><span class="n">Fcalc</span><span class="p">,</span><span class="n">phase</span><span class="p">,</span><span class="n">x</span><span class="p">,</span><span class="n">x</span><span class="p">,</span><span class="n">x</span><span class="p">,</span><span class="n">x</span><span class="p">,</span><span class="n">prfo</span> <span class="o">=</span> <span class="n">refItem</span><span class="p">[:</span><span class="mi">16</span><span class="p">]</span> |
---|
285 | <span class="n">FWHM</span> <span class="o">=</span> <span class="mf">2.</span><span class="o">*</span><span class="n">G2pwd</span><span class="o">.</span><span class="n">getgamFW</span><span class="p">(</span><span class="n">gam</span><span class="p">,</span><span class="n">sig</span><span class="p">)</span> |
---|
286 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">hklfmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">h</span><span class="p">,</span><span class="n">k</span><span class="p">,</span><span class="n">l</span><span class="p">),</span><span class="n">pos</span><span class="p">,</span><span class="n">Fobs</span><span class="p">,</span><span class="n">Fcalc</span><span class="p">,</span><span class="n">phase</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span><span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="n">sig</span><span class="p">,</span><span class="mf">0.0001</span><span class="p">)),</span><span class="n">gam</span><span class="p">,</span><span class="n">FWHM</span><span class="p">,</span><span class="n">prfo</span><span class="p">))</span> |
---|
287 | <span class="k">else</span><span class="p">:</span> |
---|
288 | <span class="n">h</span><span class="p">,</span><span class="n">k</span><span class="p">,</span><span class="n">l</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span><span class="n">dsp</span><span class="p">,</span><span class="n">pos</span><span class="p">,</span><span class="n">sig</span><span class="p">,</span><span class="n">gam</span><span class="p">,</span><span class="n">Fobs</span><span class="p">,</span><span class="n">Fcalc</span><span class="p">,</span><span class="n">phase</span><span class="p">,</span><span class="n">x</span><span class="p">,</span><span class="n">prfo</span> <span class="o">=</span> <span class="n">refItem</span><span class="p">[:</span><span class="mi">13</span><span class="p">]</span> |
---|
289 | <span class="n">FWHM</span> <span class="o">=</span> <span class="mf">2.</span><span class="o">*</span><span class="n">G2pwd</span><span class="o">.</span><span class="n">getgamFW</span><span class="p">(</span><span class="n">gam</span><span class="p">,</span><span class="n">sig</span><span class="p">)</span> |
---|
290 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">hklfmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">h</span><span class="p">,</span><span class="n">k</span><span class="p">,</span><span class="n">l</span><span class="p">),</span><span class="n">pos</span><span class="p">,</span><span class="n">Fobs</span><span class="p">,</span><span class="n">Fcalc</span><span class="p">,</span><span class="n">phase</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span> \ |
---|
291 | <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="n">sig</span><span class="p">,</span><span class="mf">0.0001</span><span class="p">))</span><span class="o">/</span><span class="mf">100.</span><span class="p">,</span><span class="n">gam</span><span class="o">/</span><span class="mf">100.</span><span class="p">,</span><span class="n">FWHM</span><span class="o">/</span><span class="mf">100.</span><span class="p">,</span><span class="n">prfo</span><span class="p">))</span> |
---|
292 | <span class="bp">self</span><span class="o">.</span><span class="n">CloseFile</span><span class="p">()</span> |
---|
293 | <span class="k">print</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">hist</span><span class="p">)</span><span class="o">+</span><span class="s">'reflections written to file '</span><span class="o">+</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fullpath</span><span class="p">))</span> |
---|
294 | </div></div> |
---|
295 | <div class="viewcode-block" id="ExportSingleText"><a class="viewcode-back" href="../exports.html#G2export_examples.ExportSingleText">[docs]</a><span class="k">class</span> <span class="nc">ExportSingleText</span><span class="p">(</span><span class="n">G2IO</span><span class="o">.</span><span class="n">ExportBaseclass</span><span class="p">):</span> |
---|
296 | <span class="sd">'''Used to create a text file with single crystal reflection data</span> |
---|
297 | |
---|
298 | <span class="sd"> :param wx.Frame G2frame: reference to main GSAS-II frame</span> |
---|
299 | <span class="sd"> '''</span> |
---|
300 | <span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">G2frame</span><span class="p">):</span> |
---|
301 | <span class="nb">super</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">__class__</span><span class="p">,</span><span class="bp">self</span><span class="p">)</span><span class="o">.</span><span class="n">__init__</span><span class="p">(</span> <span class="c"># fancy way to say <parentclass>.__init__</span> |
---|
302 | <span class="n">G2frame</span><span class="o">=</span><span class="n">G2frame</span><span class="p">,</span> |
---|
303 | <span class="n">formatName</span> <span class="o">=</span> <span class="s">'Text file'</span><span class="p">,</span> |
---|
304 | <span class="n">extension</span><span class="o">=</span><span class="s">'.txt'</span><span class="p">,</span> |
---|
305 | <span class="n">longFormatName</span> <span class="o">=</span> <span class="s">'Export reflection list as a text file'</span> |
---|
306 | <span class="p">)</span> |
---|
307 | <span class="bp">self</span><span class="o">.</span><span class="n">exporttype</span> <span class="o">=</span> <span class="p">[</span><span class="s">'single'</span><span class="p">]</span> |
---|
308 | <span class="bp">self</span><span class="o">.</span><span class="n">multiple</span> <span class="o">=</span> <span class="bp">False</span> <span class="c"># only allow one histogram to be selected</span> |
---|
309 | |
---|
310 | <div class="viewcode-block" id="ExportSingleText.Exporter"><a class="viewcode-back" href="../exports.html#G2export_examples.ExportSingleText.Exporter">[docs]</a> <span class="k">def</span> <span class="nf">Exporter</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span><span class="n">event</span><span class="o">=</span><span class="bp">None</span><span class="p">):</span> |
---|
311 | <span class="sd">'''Export a set of single crystal data as a text file</span> |
---|
312 | <span class="sd"> '''</span> |
---|
313 | <span class="c"># the export process starts here</span> |
---|
314 | <span class="bp">self</span><span class="o">.</span><span class="n">InitExport</span><span class="p">(</span><span class="n">event</span><span class="p">)</span> |
---|
315 | <span class="c"># load all of the tree into a set of dicts</span> |
---|
316 | <span class="bp">self</span><span class="o">.</span><span class="n">loadTree</span><span class="p">()</span> |
---|
317 | <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">ExportSelect</span><span class="p">(</span> <span class="c"># set export parameters</span> |
---|
318 | <span class="n">AskFile</span><span class="o">=</span><span class="s">'default'</span> <span class="c"># base name on the GPX file name</span> |
---|
319 | <span class="p">):</span> <span class="k">return</span> |
---|
320 | <span class="bp">self</span><span class="o">.</span><span class="n">OpenFile</span><span class="p">()</span> |
---|
321 | <span class="n">hist</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">histnam</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="c"># there should only be one histogram, in any case take the 1st</span> |
---|
322 | <span class="n">histblk</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">Histograms</span><span class="p">[</span><span class="n">hist</span><span class="p">]</span> |
---|
323 | <span class="n">hklfmt</span> <span class="o">=</span> <span class="s">"{:.0f},{:.0f},{:.0f}"</span> |
---|
324 | <span class="n">hfmt</span> <span class="o">=</span> <span class="s">"{:>10s} {:>8s} {:>12s} {:>12s} {:>12s} {:>7s} {:>6s}"</span> |
---|
325 | <span class="n">fmt</span> <span class="o">=</span> <span class="s">"{:>10s} {:8.3f} {:12.2f} {:12.4f} {:12.2f} {:7.2f} {:6.0f}"</span> |
---|
326 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="mi">80</span><span class="o">*</span><span class="s">'='</span><span class="p">)</span> |
---|
327 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">hfmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="s">"h,k,l"</span><span class="p">,</span><span class="s">"d-space"</span><span class="p">,</span><span class="s">"F_obs"</span><span class="p">,</span><span class="s">"sig(Fobs)"</span><span class="p">,</span><span class="s">"F_calc"</span><span class="p">,</span><span class="s">"phase"</span><span class="p">,</span><span class="s">"mult"</span><span class="p">))</span> |
---|
328 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="mi">80</span><span class="o">*</span><span class="s">'='</span><span class="p">)</span> |
---|
329 | <span class="k">for</span> <span class="p">(</span> |
---|
330 | <span class="n">h</span><span class="p">,</span><span class="n">k</span><span class="p">,</span><span class="n">l</span><span class="p">,</span><span class="n">mult</span><span class="p">,</span><span class="n">dsp</span><span class="p">,</span><span class="n">Fobs</span><span class="p">,</span><span class="n">sigFobs</span><span class="p">,</span><span class="n">Fcalc</span><span class="p">,</span><span class="n">FobsT</span><span class="p">,</span><span class="n">FcalcT</span><span class="p">,</span><span class="n">phase</span><span class="p">,</span><span class="n">Icorr</span> |
---|
331 | <span class="p">)</span> <span class="ow">in</span> <span class="n">histblk</span><span class="p">[</span><span class="s">'Data'</span><span class="p">][</span><span class="s">'RefList'</span><span class="p">]:</span> |
---|
332 | <span class="bp">self</span><span class="o">.</span><span class="n">Write</span><span class="p">(</span><span class="n">fmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">hklfmt</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">h</span><span class="p">,</span><span class="n">k</span><span class="p">,</span><span class="n">l</span><span class="p">),</span><span class="n">dsp</span><span class="p">,</span><span class="n">Fobs</span><span class="p">,</span><span class="n">sigFobs</span><span class="p">,</span><span class="n">Fcalc</span><span class="p">,</span><span class="n">phase</span><span class="p">,</span><span class="n">mult</span><span class="p">))</span> |
---|
333 | <span class="bp">self</span><span class="o">.</span><span class="n">CloseFile</span><span class="p">()</span> |
---|
334 | <span class="k">print</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">hist</span><span class="p">)</span><span class="o">+</span><span class="s">' written to file '</span><span class="o">+</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">fullpath</span><span class="p">))</span> |
---|
335 | </pre></div></div></div> |
---|
336 | |
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337 | </div> |
---|
338 | </div> |
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339 | </div> |
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340 | <div class="sphinxsidebar"> |
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341 | <div class="sphinxsidebarwrapper"> |
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342 | <p class="logo"><a href="../index.html"> |
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343 | <img class="logo" src="../_static/G2_html_logo.png" alt="Logo"/> |
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344 | </a></p> |
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345 | <div id="searchbox" style="display: none"> |
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346 | <h3>Quick search</h3> |
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347 | <form class="search" action="../search.html" method="get"> |
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348 | <input type="text" name="q" /> |
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349 | <input type="submit" value="Go" /> |
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350 | <input type="hidden" name="check_keywords" value="yes" /> |
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351 | <input type="hidden" name="area" value="default" /> |
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352 | </form> |
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353 | <p class="searchtip" style="font-size: 90%"> |
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354 | Enter search terms or a module, class or function name. |
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355 | </p> |
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356 | </div> |
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357 | <script type="text/javascript">$('#searchbox').show(0);</script> |
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358 | </div> |
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359 | </div> |
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360 | <div class="clearer"></div> |
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361 | </div> |
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362 | <div class="related"> |
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363 | <h3>Navigation</h3> |
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364 | <ul> |
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365 | <li class="right" style="margin-right: 10px"> |
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366 | <a href="../genindex.html" title="General Index" |
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367 | >index</a></li> |
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368 | <li class="right" > |
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369 | <a href="../py-modindex.html" title="Python Module Index" |
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370 | >modules</a> |</li> |
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371 | <li><a href="../index.html">GSAS-II 0.2.0 documentation</a> »</li> |
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372 | <li><a href="index.html" >Module code</a> »</li> |
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373 | </ul> |
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374 | </div> |
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375 | <div class="footer"> |
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376 | © Copyright 2013, Von Dreele and Toby for Argonne National Laboratory. |
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377 | Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.2.2. |
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378 | </div> |
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379 | </body> |
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380 | </html> |
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