Changeset 1178


Ignore:
Timestamp:
Jan 12, 2022 8:43:54 PM (7 months ago)
Author:
ilavsky
Message:

more fixes 12IDB how to

File:
1 edited

Legend:

Unmodified
Added
Removed
  • trunk/User Procedures/Nika/NI1_InstrumentSupport.ipf

    r1177 r1178  
    25322532        else
    25332533        String nb = "APS12IDB_Instructions"
    2534         NewNotebook/N=$nb/F=1/V=1/K=1/ENCG={1,1}/W=(130,170,1236,1000) as "APS12IDB_Instructions"
     2534        NewNotebook/N=$nb/F=1/V=1/K=1/ENCG={1,1}/W=(114,125,820,855) as "APS12IDB_Instructions"
    25352535        Notebook $nb defaultTab=10, magnification=125
    25362536        Notebook $nb showRuler=1, rulerUnits=2, updating={1, 1}
    25372537        Notebook $nb newRuler=Normal, justification=0, margins={0,0,468}, spacing={0,0,0}, tabs={}, rulerDefaults={"Helvetica",11,0,(0,0,0)}
    25382538        Notebook $nb newRuler=Title, justification=0, margins={0,0,468}, spacing={0,0,0}, tabs={}, rulerDefaults={"Geneva",12,3,(0,0,0)}
    2539         Notebook $nb ruler=Title, text="Instructions for use of APS 12IDC special configuration\r"
    2540         Notebook $nb ruler=Normal, text="\r"
     2539        Notebook $nb ruler=Title, fSize=14, textRGB=(65535,0,0), text="Instructions for use of APS 12IDC special configuration\r"
     2540        Notebook $nb ruler=Normal, fSize=-1, textRGB=(0,0,0), text="\r"
    25412541        Notebook $nb text="\r"
    2542         Notebook $nb text="1. Find path to your data images. Pick folder - either \"SAXS\" or \"WAXS\" - with raw tiff or hdf5/Nexus im"
    2543         Notebook $nb text="ages, not the average folder. \r"
     2542        Notebook $nb text="1. Find path to your data images. Pick folder - either \"SAXS\" or \"WAXS\" - with raw tiff or hdf5/Nexus fi"
     2543        Notebook $nb text="les, not other foleders (e.g. not the Average folder). \r"
    25442544        Notebook $nb text="\r"
    2545         Notebook $nb text="2. Code will find available data, calibrations, masks and present dialog to choose to :\r"
    2546         Notebook $nb text="\r"
     2545        Notebook $nb text="2. Code will find available data, calibrations, masks, and present dialog to choose to :\r"
    25472546        Notebook $nb text="\ta. ", fStyle=1, text="Subtract Empty/background?", fStyle=-1
    25482547        Notebook $nb text=" - this is basically data reduction method (see below)\r"
    2549         Notebook $nb text="\r"
    25502548        Notebook $nb text="\tb. ", fStyle=1, text="Load calibration from appropriate calibration file", fStyle=-1
    25512549        Notebook $nb text=". If you choose not to, you need to calibrate everything yourself. \r"
    2552         Notebook $nb text="\r"
    25532550        Notebook $nb text="   c. ", fStyle=1, text="Choose to reload calibration from metadata with each loaded image", fStyle=-1
    2554         Notebook $nb text=". Rarely needed... This is useful when you may have data from different calibrations in the same folder. Do "
    2555         Notebook $nb text="NOT choose this oiption if you need to overwrite original calibration.  \r"
    2556         Notebook $nb text="\r"
     2551        Notebook $nb text=". Rarely needed... This is useful when you may have data from different calibrations (e.g., distances, w"
     2552        Notebook $nb text="avelengths,...) in the same folder. Do NOT choose this option if you need to overwrite anything in calib"
     2553        Notebook $nb text="ration.  \r"
    25572554        Notebook $nb text="   d. ", fStyle=1, text="Load appropriate mask", fStyle=-1
    25582555        Notebook $nb text=", SAXS or WAXS, if found. If you choose not to, you need to design your own mask and switch masking on y"
    25592556        Notebook $nb text="ourself. \r"
    25602557        Notebook $nb text="\r"
    2561         Notebook $nb text="With default choices you will : choose \"bioSAXS\" data processing, load calibration from xxxx_calibration"
    2562         Notebook $nb text="_parameters.txt file, not reload calibration with each loaded image, and load appropriate existing mask."
     2558        Notebook $nb text="3. Continue, all should finish without any error messages.  \r"
    25632559        Notebook $nb text="\r"
     2560        Notebook $nb fStyle=1, text="With default choices you will", fStyle=-1
     2561        Notebook $nb text=" : choose \"bioSAXS\" data processing, load calibration from xxxx_calibration_parameters.txt file, not rel"
     2562        Notebook $nb text="oad calibration with each new loaded image, and import appropriate existing mask.\r"
    25642563        Notebook $nb text="\r"
    25652564        Notebook $nb text="\r"
    25662565        Notebook $nb fStyle=5, text="*** Data reduction methods ***\r"
    2567         Notebook $nb fStyle=-1, text="1. ", fStyle=1, text="Subtract Empty/Background - NO", fStyle=-1
     2566        Notebook $nb fStyle=-1, text="1. ", fStyle=1, text="Subtract Empty/Background = NO     ", fStyle=-1
    25682567        Notebook $nb text=": reduces each image separately, normalized by transmitted counts (flux and transmission normalization) "
    25692568        Notebook $nb text="and normalization factor, masked. Solvent/background sutraction needs to be done later. This is typical "
     
    25722571        Notebook $nb text="nd typical for bioSAXS data.\r"
    25732572        Notebook $nb text="\r"
    2574         Notebook $nb text="2. ", fStyle=1, text="Subtract Empty/Background - YES", fStyle=-1
    2575         Notebook $nb text=". This is typical Nika processing for materials SAXS - solvent/background image is subtracted in Nika di"
    2576         Notebook $nb text="rectly, with flux normalization for sample and background, transmission calculation etc. In this case on"
    2577         Notebook $nb text="ly ONE background image can be used at time, which may not be suitable if you have multiple images. \r"
    2578         Notebook $nb text="\r"
     2573        Notebook $nb text="2. ", fStyle=1, text="Subtract Empty/Background = YES   :  ", fStyle=-1
     2574        Notebook $nb text="typical Nika processing for materials SAXS - solvent/background image is subtracted in Nika directly fro"
     2575        Notebook $nb text="m each image, with flux normalization for sample and background, transmission calculation etc. In this c"
     2576        Notebook $nb text="ase only ONE background image can be used at time, which may not be suitable if you have multiple images"
     2577        Notebook $nb text=" fir background. \r"
    25792578        Notebook $nb text="\r"
    25802579        Notebook $nb text="Jan Ilavsky, 1/12/2021\r"
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