Changeset 1178

Timestamp:

Jan 12, 2022 8:43:54 PM (7 months ago)

Author:

ilavsky

Message:

more fixes 12IDB how to

File:

• trunk/User Procedures/Nika/NI1_InstrumentSupport.ipf (modified) (2 diffs)

trunk/User Procedures/Nika/NI1_InstrumentSupport.ipf

@@ -2532 +2532 @@
         else
         String nb = "APS12IDB_Instructions"
-        NewNotebook/N=$nb/F=1/V=1/K=1/ENCG={1,1}/W=(130,170,1236,1000) as "APS12IDB_Instructions"
+        NewNotebook/N=$nb/F=1/V=1/K=1/ENCG={1,1}/W=(114,125,820,855) as "APS12IDB_Instructions"
         Notebook $nb defaultTab=10, magnification=125
         Notebook $nb showRuler=1, rulerUnits=2, updating={1, 1}
         Notebook $nb newRuler=Normal, justification=0, margins={0,0,468}, spacing={0,0,0}, tabs={}, rulerDefaults={"Helvetica",11,0,(0,0,0)}
         Notebook $nb newRuler=Title, justification=0, margins={0,0,468}, spacing={0,0,0}, tabs={}, rulerDefaults={"Geneva",12,3,(0,0,0)}
-        Notebook $nb ruler=Title, text="Instructions for use of APS 12IDC special configuration\r"
-        Notebook $nb ruler=Normal, text="\r"
+        Notebook $nb ruler=Title, fSize=14, textRGB=(65535,0,0), text="Instructions for use of APS 12IDC special configuration\r"
+        Notebook $nb ruler=Normal, fSize=-1, textRGB=(0,0,0), text="\r"
         Notebook $nb text="\r"
-        Notebook $nb text="1. Find path to your data images. Pick folder - either \"SAXS\" or \"WAXS\" - with raw tiff or hdf5/Nexus im"
-        Notebook $nb text="ages, not the average folder. \r"
+        Notebook $nb text="1. Find path to your data images. Pick folder - either \"SAXS\" or \"WAXS\" - with raw tiff or hdf5/Nexus fi"
+        Notebook $nb text="les, not other foleders (e.g. not the Average folder). \r"
         Notebook $nb text="\r"
-        Notebook $nb text="2. Code will find available data, calibrations, masks and present dialog to choose to :\r"
-        Notebook $nb text="\r"
+        Notebook $nb text="2. Code will find available data, calibrations, masks, and present dialog to choose to :\r"
         Notebook $nb text="\ta. ", fStyle=1, text="Subtract Empty/background?", fStyle=-1
         Notebook $nb text=" - this is basically data reduction method (see below)\r"
-        Notebook $nb text="\r"
         Notebook $nb text="\tb. ", fStyle=1, text="Load calibration from appropriate calibration file", fStyle=-1
         Notebook $nb text=". If you choose not to, you need to calibrate everything yourself. \r"
-        Notebook $nb text="\r"
         Notebook $nb text="   c. ", fStyle=1, text="Choose to reload calibration from metadata with each loaded image", fStyle=-1
-        Notebook $nb text=". Rarely needed... This is useful when you may have data from different calibrations in the same folder. Do "
-        Notebook $nb text="NOT choose this oiption if you need to overwrite original calibration.  \r"
-        Notebook $nb text="\r"
+        Notebook $nb text=". Rarely needed... This is useful when you may have data from different calibrations (e.g., distances, w"
+        Notebook $nb text="avelengths,...) in the same folder. Do NOT choose this option if you need to overwrite anything in calib"
+        Notebook $nb text="ration.  \r"
         Notebook $nb text="   d. ", fStyle=1, text="Load appropriate mask", fStyle=-1
         Notebook $nb text=", SAXS or WAXS, if found. If you choose not to, you need to design your own mask and switch masking on y"
         Notebook $nb text="ourself. \r"
         Notebook $nb text="\r"
-        Notebook $nb text="With default choices you will : choose \"bioSAXS\" data processing, load calibration from xxxx_calibration"
-        Notebook $nb text="_parameters.txt file, not reload calibration with each loaded image, and load appropriate existing mask."
+        Notebook $nb text="3. Continue, all should finish without any error messages.  \r"
         Notebook $nb text="\r"
+        Notebook $nb fStyle=1, text="With default choices you will", fStyle=-1
+        Notebook $nb text=" : choose \"bioSAXS\" data processing, load calibration from xxxx_calibration_parameters.txt file, not rel"
+        Notebook $nb text="oad calibration with each new loaded image, and import appropriate existing mask.\r"
         Notebook $nb text="\r"
         Notebook $nb text="\r"
         Notebook $nb fStyle=5, text="*** Data reduction methods ***\r"
-        Notebook $nb fStyle=-1, text="1. ", fStyle=1, text="Subtract Empty/Background - NO", fStyle=-1
+        Notebook $nb fStyle=-1, text="1. ", fStyle=1, text="Subtract Empty/Background = NO     ", fStyle=-1
         Notebook $nb text=": reduces each image separately, normalized by transmitted counts (flux and transmission normalization) "
         Notebook $nb text="and normalization factor, masked. Solvent/background sutraction needs to be done later. This is typical "
@@ -2572 +2571 @@
         Notebook $nb text="nd typical for bioSAXS data.\r"
         Notebook $nb text="\r"
-        Notebook $nb text="2. ", fStyle=1, text="Subtract Empty/Background - YES", fStyle=-1
-        Notebook $nb text=". This is typical Nika processing for materials SAXS - solvent/background image is subtracted in Nika di"
-        Notebook $nb text="rectly, with flux normalization for sample and background, transmission calculation etc. In this case on"
-        Notebook $nb text="ly ONE background image can be used at time, which may not be suitable if you have multiple images. \r"
-        Notebook $nb text="\r"
+        Notebook $nb text="2. ", fStyle=1, text="Subtract Empty/Background = YES   :  ", fStyle=-1
+        Notebook $nb text="typical Nika processing for materials SAXS - solvent/background image is subtracted in Nika directly fro"
+        Notebook $nb text="m each image, with flux normalization for sample and background, transmission calculation etc. In this c"
+        Notebook $nb text="ase only ONE background image can be used at time, which may not be suitable if you have multiple images"
+        Notebook $nb text=" fir background. \r"
         Notebook $nb text="\r"
         Notebook $nb text="Jan Ilavsky, 1/12/2021\r"