1 | # $Id: addcmds.tcl 694 2009-12-04 23:10:27Z toby $ |
---|
2 | |
---|
3 | #----------- Add Phase routines ---------------------------------------- |
---|
4 | |
---|
5 | proc MakeAddPhaseBox {} { |
---|
6 | global expmap expgui |
---|
7 | |
---|
8 | set expgui(coordList) {} |
---|
9 | set nextphase "" |
---|
10 | foreach p {1 2 3 4 5 6 7 8 9} { |
---|
11 | if {[lsearch $expmap(phaselist) $p] == -1} { |
---|
12 | set nextphase $p |
---|
13 | break |
---|
14 | } |
---|
15 | } |
---|
16 | |
---|
17 | # no more room |
---|
18 | if {$nextphase == ""} { |
---|
19 | MyMessageBox -parent . -title "Add Phase Error" \ |
---|
20 | -message "There are already 9 phases. You cannot add more." \ |
---|
21 | -icon error |
---|
22 | return |
---|
23 | } |
---|
24 | |
---|
25 | set np .newphase |
---|
26 | catch {destroy $np} |
---|
27 | toplevel $np |
---|
28 | bind $np <Key-F1> "MakeWWWHelp expgui2.html addphase" |
---|
29 | |
---|
30 | grid [label $np.l1 -text "Adding phase #$nextphase"] \ |
---|
31 | -column 0 -row 0 -sticky w |
---|
32 | grid [label $np.l2 -text "Phase title:"] -column 0 -row 1 |
---|
33 | grid [entry $np.t1 -width 68] -column 1 -row 1 -columnspan 8 |
---|
34 | grid [label $np.l3 -text "Space Group:"] -column 0 -row 2 |
---|
35 | grid [entry $np.t2 -width 12] -column 1 -row 2 |
---|
36 | grid [frame $np.f -bd 4 -relief groove] -column 3 -row 2 -columnspan 8 |
---|
37 | set col -1 |
---|
38 | foreach i {a b c} { |
---|
39 | grid [label $np.f.l1$i -text " $i "] -column [incr col] -row 1 |
---|
40 | grid [entry $np.f.e1$i -width 12] -column [incr col] -row 1 |
---|
41 | } |
---|
42 | set col -1 |
---|
43 | foreach i {a b g} { |
---|
44 | grid [label $np.f.l2$i -text $i] -column [incr col] -row 2 |
---|
45 | set font [$np.f.l2$i cget -font] |
---|
46 | $np.f.l2$i config -font "Symbol [lrange $font 1 end]" |
---|
47 | grid [entry $np.f.e2$i -width 12] -column [incr col] -row 2 |
---|
48 | $np.f.e2$i insert 0 90. |
---|
49 | } |
---|
50 | |
---|
51 | grid [frame $np.bf] -row 3 -column 0 -columnspan 10 -sticky ew |
---|
52 | grid [button $np.bf.b1 -text Add \ |
---|
53 | -command "addphase $np"] -column 2 -row 3 |
---|
54 | bind $np <Return> "addphase $np" |
---|
55 | grid [button $np.bf.b2 -text Cancel \ |
---|
56 | -command "destroy $np"] -column 3 -row 3 |
---|
57 | grid columnconfig $np.bf 4 -weight 1 |
---|
58 | grid [button $np.bf.help -text Help -bg yellow \ |
---|
59 | -command "MakeWWWHelp expgui2.html addphase"] \ |
---|
60 | -column 4 -row 3 |
---|
61 | |
---|
62 | # get the input formats if not already defined |
---|
63 | GetImportFormats |
---|
64 | if {[llength $expgui(importFormatList)] > 0} { |
---|
65 | grid [frame $np.bf.fr -bd 4 -relief groove] -column 5 -row 3 |
---|
66 | grid [button $np.bf.fr.b3 -text "Import phase from: " \ |
---|
67 | -command "ImportPhase \$expgui(importFormat) $np"] \ |
---|
68 | -column 0 -row 0 -sticky e |
---|
69 | set menu [eval tk_optionMenu $np.bf.fr.b4 expgui(importFormat) \ |
---|
70 | $expgui(importFormatList)] |
---|
71 | for {set i 0} {$i <= [$menu index end]} {incr i} { |
---|
72 | $menu entryconfig $i -command "ImportPhase \$expgui(importFormat) $np" |
---|
73 | } |
---|
74 | grid $np.bf.fr.b4 -column 1 -row 0 -sticky w |
---|
75 | grid rowconfig $np.bf.fr 0 -pad 10 |
---|
76 | grid columnconfig $np.bf.fr 0 -pad 10 |
---|
77 | grid columnconfig $np.bf.fr 1 -pad 10 |
---|
78 | } |
---|
79 | wm title $np "add new phase" |
---|
80 | |
---|
81 | # set grab, etc. |
---|
82 | putontop $np |
---|
83 | |
---|
84 | tkwait window $np |
---|
85 | |
---|
86 | # fix grab... |
---|
87 | afterputontop |
---|
88 | } |
---|
89 | |
---|
90 | proc addphase {np} { |
---|
91 | global expgui expmap |
---|
92 | # validate the input |
---|
93 | set err {} |
---|
94 | set title [$np.t1 get] |
---|
95 | if {[string trim $title] == ""} { |
---|
96 | append err " Title cannot be blank\n" |
---|
97 | } |
---|
98 | set spg [$np.t2 get] |
---|
99 | if {[string trim $spg] == ""} { |
---|
100 | append err " Space group cannot be blank\n" |
---|
101 | } |
---|
102 | foreach i {a b c} { |
---|
103 | set cell($i) [$np.f.e1$i get] |
---|
104 | if {[string trim $cell($i)] == ""} { |
---|
105 | append err " $i cannot be blank\n" |
---|
106 | } elseif {[catch {expr $cell($i)}]} { |
---|
107 | append err " $i is not valid\n" |
---|
108 | } |
---|
109 | } |
---|
110 | |
---|
111 | foreach i {a b g} lbl {alpha beta gamma} { |
---|
112 | set cell($lbl) [$np.f.e2$i get] |
---|
113 | if {[string trim $cell($lbl)] == ""} { |
---|
114 | append err " $lbl cannot be blank\n" |
---|
115 | } elseif {[catch {expr $cell($lbl)}]} { |
---|
116 | append err " $lbl is not valid\n" |
---|
117 | } |
---|
118 | } |
---|
119 | |
---|
120 | if {$err != ""} { |
---|
121 | MyMessageBox -parent . -title "Add Phase Error" \ |
---|
122 | -message "The following error(s) were found in your input:\n$err" \ |
---|
123 | -icon error |
---|
124 | set expgui(oldphaselist) -1 |
---|
125 | return |
---|
126 | } |
---|
127 | |
---|
128 | # check the space group |
---|
129 | set fp [open spg.in w] |
---|
130 | puts $fp "N" |
---|
131 | puts $fp "N" |
---|
132 | puts $fp $spg |
---|
133 | puts $fp "Q" |
---|
134 | close $fp |
---|
135 | global tcl_platform |
---|
136 | catch { |
---|
137 | if {$tcl_platform(platform) == "windows"} { |
---|
138 | exec [file join $expgui(gsasexe) spcgroup.exe] < spg.in >& spg.out |
---|
139 | } else { |
---|
140 | exec [file join $expgui(gsasexe) spcgroup] < spg.in >& spg.out |
---|
141 | } |
---|
142 | } |
---|
143 | set fp [open spg.out r] |
---|
144 | set out [read $fp] |
---|
145 | close $fp |
---|
146 | # attempt to parse out the output (fix up if parse did not work) |
---|
147 | if {[regexp "space group symbol.*>(.*)Enter a new space group symbol" \ |
---|
148 | $out a b ] != 1} {set b $out} |
---|
149 | if {[string first Error $b] != -1} { |
---|
150 | # got an error, show it |
---|
151 | ShowBigMessage \ |
---|
152 | $np.error \ |
---|
153 | "Error processing space group\nReview error message below" \ |
---|
154 | $b OK "" 1 |
---|
155 | set expgui(oldphaselist) -1 |
---|
156 | return |
---|
157 | } else { |
---|
158 | # show the result and confirm |
---|
159 | set opt [ShowBigMessage \ |
---|
160 | $np.check \ |
---|
161 | "Check the symmetry operators in the output below" \ |
---|
162 | $b \ |
---|
163 | {Continue Redo} ] |
---|
164 | if {$opt > 1} { |
---|
165 | set expgui(oldphaselist) -1 |
---|
166 | return |
---|
167 | } |
---|
168 | } |
---|
169 | file delete spg.in spg.out |
---|
170 | |
---|
171 | # ok do it! |
---|
172 | set fp [open exptool.in w] |
---|
173 | puts $fp "P" |
---|
174 | puts $fp $title |
---|
175 | puts $fp $spg |
---|
176 | puts $fp "$cell(a) $cell(b) $cell(c) $cell(alpha) $cell(beta) $cell(gamma)" |
---|
177 | puts $fp "/" |
---|
178 | close $fp |
---|
179 | global tcl_platform |
---|
180 | # Save the current exp file |
---|
181 | savearchiveexp |
---|
182 | # disable the file changed monitor |
---|
183 | set expgui(expModifiedLast) 0 |
---|
184 | set expnam [file root [file tail $expgui(expfile)]] |
---|
185 | # save the previous phase list |
---|
186 | set expgui(oldphaselist) $expmap(phaselist) |
---|
187 | catch { |
---|
188 | if {$tcl_platform(platform) == "windows"} { |
---|
189 | exec [file join $expgui(gsasexe) exptool.exe] $expnam \ |
---|
190 | < exptool.in >& exptool.out |
---|
191 | } else { |
---|
192 | exec [file join $expgui(gsasexe) exptool] $expnam \ |
---|
193 | < exptool.in >& exptool.out |
---|
194 | } |
---|
195 | } errmsg |
---|
196 | # load the revised exp file |
---|
197 | set oldphaselist $expmap(phaselist) |
---|
198 | loadexp $expgui(expfile) |
---|
199 | set fp [open exptool.out r] |
---|
200 | set out [read $fp] |
---|
201 | close $fp |
---|
202 | destroy $np |
---|
203 | set err 0 |
---|
204 | if {[llength $oldphaselist] == [llength $expmap(phaselist)]} {set err 1} |
---|
205 | if {$errmsg != ""} { |
---|
206 | set err 1 |
---|
207 | append errmsg "\n" $out |
---|
208 | } else { |
---|
209 | set errmsg $out |
---|
210 | } |
---|
211 | if {$expgui(showexptool) || $err} { |
---|
212 | set msg "Please review the result from adding the phase" |
---|
213 | if {$err} {append msg "\nIt appears an error occurred!"} |
---|
214 | ShowBigMessage $np $msg $errmsg OK "" $err |
---|
215 | } |
---|
216 | file delete exptool.in exptool.out |
---|
217 | # set the powpref warning (2 = required) |
---|
218 | set expgui(needpowpref) 2 |
---|
219 | set msg "A phase was added" |
---|
220 | if {[string first $msg $expgui(needpowpref_why)] == -1} { |
---|
221 | append expgui(needpowpref_why) "\t$msg\n" |
---|
222 | } |
---|
223 | # now select the new phase |
---|
224 | SelectOnePhase [lindex $expmap(phaselist) end] |
---|
225 | } |
---|
226 | |
---|
227 | #----------- Add Histogram routines -------------------------------------- |
---|
228 | proc LabelInstParm {args} { |
---|
229 | global newhist |
---|
230 | switch $newhist(insttype) { |
---|
231 | TOF { |
---|
232 | set newhist(instfiletext) "Neutron Time of Flight" |
---|
233 | catch { |
---|
234 | set b $newhist(setnum) |
---|
235 | append newhist(instfiletext) ", 2theta = $newhist(inst${b}Angle)" |
---|
236 | } |
---|
237 | } |
---|
238 | ED {set newhist(instfiletext) "X-ray Energy Dispersive"} |
---|
239 | "CW X" {set newhist(instfiletext) "CW X-ray"} |
---|
240 | "CW N" {set newhist(instfiletext) "CW Neutron"} |
---|
241 | } |
---|
242 | } |
---|
243 | trace variable newhist(setnum) w LabelInstParm |
---|
244 | proc MakeAddHistBox {} { |
---|
245 | global expmap newhist |
---|
246 | |
---|
247 | # --> should check here if room for another histogram, but only texture |
---|
248 | # folks will ever need that |
---|
249 | |
---|
250 | set np .newhist |
---|
251 | catch {destroy $np} |
---|
252 | toplevel $np |
---|
253 | bind $np <Key-F1> "MakeWWWHelp expgui3.html AddHist" |
---|
254 | |
---|
255 | grid [label $np.l0 -text "Adding a new histogram"] \ |
---|
256 | -column 0 -row 0 -sticky ew -columnspan 7 |
---|
257 | grid [checkbutton $np.d0 -text "Dummy Histogram" -variable newhist(dummy) \ |
---|
258 | -command "PostDummyOpts $np" \ |
---|
259 | ] -column 2 -row 0 -columnspan 99 -sticky e |
---|
260 | grid [label $np.l1 -text "Data file:"] -column 0 -row 2 |
---|
261 | grid [label $np.t1 -textvariable newhist(rawfile) -bd 2 -relief ridge] \ |
---|
262 | -column 1 -row 2 -columnspan 3 -sticky ew |
---|
263 | grid [button $np.b1 -text "Select File" \ |
---|
264 | -command "getrawfile $np" \ |
---|
265 | ] -column 4 -row 2 |
---|
266 | |
---|
267 | grid [label $np.lbank -text "Select bank" -anchor w] -column 1 -row 3 -sticky w |
---|
268 | grid [frame $np.bank] -column 2 -row 3 -columnspan 7 -sticky ew |
---|
269 | |
---|
270 | grid [label $np.l2 -text "Instrument\nParameter file:"] -column 0 -row 5 |
---|
271 | grid [label $np.t2 -textvariable newhist(instfile) -bd 2 -relief ridge] \ |
---|
272 | -column 1 -row 5 -columnspan 3 -sticky ew |
---|
273 | grid [button $np.b2 -text "Select File" \ |
---|
274 | -command "getinstfile $np" \ |
---|
275 | ] -column 4 -row 5 |
---|
276 | grid [button $np.edit -text "Edit file" \ |
---|
277 | -command {EditInstFile $newhist(instfile)}] \ |
---|
278 | -column 5 -row 5 |
---|
279 | |
---|
280 | grid [label $np.lset -text "Select set" -anchor w] -column 1 -row 6 -sticky w |
---|
281 | grid [frame $np.set] -column 2 -row 6 -columnspan 7 -sticky ew |
---|
282 | grid [label $np.t2a -textvariable newhist(instfiletext) \ |
---|
283 | -justify center -anchor center -fg blue] \ |
---|
284 | -column 0 -row 8 -columnspan 99 -sticky ew |
---|
285 | |
---|
286 | grid [button $np.f6a -text "Run\nRAWPLOT" -command "RunRawplot $np"] \ |
---|
287 | -column 4 -row 18 -rowspan 2 |
---|
288 | grid [label $np.l3 -text "Usable data limit:"] -column 0 -row 18 -rowspan 3 |
---|
289 | grid [entry $np.e3 -width 12 -textvariable newhist(2tLimit) \ |
---|
290 | ] -column 1 -row 18 -rowspan 3 |
---|
291 | grid [radiobutton $np.cb3 -text "D-min" -variable newhist(LimitMode) \ |
---|
292 | -value 0] -column 2 -row 18 -sticky w |
---|
293 | grid [radiobutton $np.cb4 -textvariable newhist(limitLbl) \ |
---|
294 | -variable newhist(LimitMode) -anchor w -justify l \ |
---|
295 | -value 1] -column 2 -row 20 -sticky w |
---|
296 | grid [radiobutton $np.cb5 -text "Q-max" -variable newhist(LimitMode) \ |
---|
297 | -value 2] -column 2 -row 19 -sticky w |
---|
298 | set newhist(limitLbl) "TOF-min\n2-Theta Max" |
---|
299 | # spacers |
---|
300 | grid [frame $np.sp0 -bg white] \ |
---|
301 | -columnspan 20 -column 0 -row 1 -sticky nsew -ipady 2 |
---|
302 | grid [frame $np.sp1 -bg white] \ |
---|
303 | -columnspan 20 -column 0 -row 4 -sticky nsew -ipady 2 |
---|
304 | grid [frame $np.sp2 -bg white] \ |
---|
305 | -columnspan 20 -column 0 -row 17 -sticky nsew -ipady 2 |
---|
306 | grid [frame $np.sp3 -bg white] \ |
---|
307 | -columnspan 20 -column 0 -row 98 -sticky nsew -ipady 2 |
---|
308 | grid [frame $np.f6] -column 0 -row 99 -columnspan 5 -sticky ew |
---|
309 | grid [button $np.f6.b6a -text Add \ |
---|
310 | -command "addhist $np"] -column 0 -row 0 |
---|
311 | bind $np <Return> "addhist $np" |
---|
312 | grid [button $np.f6.b6b -text Cancel \ |
---|
313 | -command "destroy $np"] -column 1 -row 0 |
---|
314 | grid [button $np.f6.help -text Help -bg yellow \ |
---|
315 | -command "MakeWWWHelp expgui3.html AddHist"] \ |
---|
316 | -column 2 -row 0 -sticky e |
---|
317 | grid columnconfigure $np.f6 2 -weight 1 |
---|
318 | grid columnconfigure $np 3 -weight 1 |
---|
319 | |
---|
320 | # dummy histogram stuff |
---|
321 | frame $np.d1 |
---|
322 | grid [label $np.d1.l1 -text min] -col 1 -row 1 |
---|
323 | grid [label $np.d1.l2 -text max] -col 2 -row 1 |
---|
324 | grid [label $np.d1.l3 -text step] -col 3 -row 1 |
---|
325 | grid [label $np.d1.lu -text ""] -col 4 -row 1 -rowspan 2 |
---|
326 | grid [entry $np.d1.e1 -width 10 -textvariable newhist(tmin)] -col 1 -row 2 |
---|
327 | grid [entry $np.d1.e2 -width 10 -textvariable newhist(tmax)] -col 2 -row 2 |
---|
328 | grid [entry $np.d1.e3 -width 10 -textvariable newhist(tstep)] -col 3 -row 2 |
---|
329 | grid [label $np.d1.m1 -anchor w] -col 1 -row 3 -sticky ew |
---|
330 | grid [label $np.d1.m2 -anchor w] -col 2 -row 3 -sticky ew |
---|
331 | label $np.dl1 -text "Data range:" |
---|
332 | label $np.dl2 -text "Allowed" |
---|
333 | label $np.dl3 -text "\n" -justify left -fg blue |
---|
334 | wm title $np "add new histogram" |
---|
335 | |
---|
336 | set newhist(banknum) {} |
---|
337 | set newhist(setnum) {} |
---|
338 | if {[string trim $newhist(rawfile)] != {}} { |
---|
339 | validaterawfile $np $newhist(rawfile) |
---|
340 | } |
---|
341 | if {[string trim $newhist(instfile)] != {}} { |
---|
342 | validateinstfile $np $newhist(instfile) |
---|
343 | } |
---|
344 | |
---|
345 | PostDummyOpts $np |
---|
346 | # set grab, etc. |
---|
347 | putontop $np |
---|
348 | |
---|
349 | tkwait window $np |
---|
350 | |
---|
351 | # fix grab... |
---|
352 | afterputontop |
---|
353 | } |
---|
354 | |
---|
355 | # convert a file to Win-95 direct access |
---|
356 | proc WinCvt {file win} { |
---|
357 | global expgui |
---|
358 | if ![file exists $file] { |
---|
359 | MyMessageBox -parent $win -title "Convert Error" \ |
---|
360 | -message "File $file does not exist" -icon error |
---|
361 | return |
---|
362 | } |
---|
363 | |
---|
364 | set tmpname "[file join [file dirname $file] tempfile.xxx]" |
---|
365 | set oldname "[file rootname $file].org" |
---|
366 | if [file exists $oldname] { |
---|
367 | set ans [MyMessageBox -parent $win -title "OK to overwrite?" \ |
---|
368 | -message "File [file tail $oldname] exists in [file dirname $oldname]. OK to overwrite?" \ |
---|
369 | -icon question -type yesno -default yes] |
---|
370 | if {$ans == "no"} return |
---|
371 | catch {file delete $oldname} |
---|
372 | } |
---|
373 | |
---|
374 | if [catch { |
---|
375 | set in [open $file r] |
---|
376 | # needed to test under UNIX |
---|
377 | set out [open $tmpname w] |
---|
378 | fconfigure $out -translation crlf |
---|
379 | set len [gets $in line] |
---|
380 | if {$len > 160} { |
---|
381 | # this is an old-style UNIX file. Hope there are no control characters |
---|
382 | set i 0 |
---|
383 | set j 79 |
---|
384 | while {$j < $len} { |
---|
385 | puts $out [string range $line $i $j] |
---|
386 | incr i 80 |
---|
387 | incr j 80 |
---|
388 | } |
---|
389 | } else { |
---|
390 | while {$len >= 0} { |
---|
391 | append line " " |
---|
392 | append line " " |
---|
393 | set line [string range $line 0 79] |
---|
394 | puts $out $line |
---|
395 | set len [gets $in line] |
---|
396 | } |
---|
397 | } |
---|
398 | close $in |
---|
399 | close $out |
---|
400 | file rename $file $oldname |
---|
401 | file rename $tmpname $file |
---|
402 | } errmsg] { |
---|
403 | MyMessageBox -parent $win -title Notify \ |
---|
404 | -message "Error in conversion:\n$errmsg" -icon warning |
---|
405 | } |
---|
406 | return $file |
---|
407 | } |
---|
408 | |
---|
409 | proc getrawfile {np} { |
---|
410 | global newhist tcl_platform |
---|
411 | if {$tcl_platform(platform) == "windows"} { |
---|
412 | set inp [ |
---|
413 | tk_getOpenFile -parent $np -initialfile $newhist(rawfile) -filetypes { |
---|
414 | {"Data files" .GSAS} {"Data files" .GSA} |
---|
415 | {"Data files" .RAW} {"All files" *} |
---|
416 | } |
---|
417 | ] |
---|
418 | } else { |
---|
419 | set inp [ |
---|
420 | tk_getOpenFile -parent $np -initialfile $newhist(rawfile) -filetypes { |
---|
421 | {"Data files" .GSA*} {"Data files" .RAW} |
---|
422 | {"Data files" .gsa*} {"Data files" .raw} |
---|
423 | {"All files" *} |
---|
424 | } |
---|
425 | ] |
---|
426 | } |
---|
427 | validaterawfile $np $inp |
---|
428 | } |
---|
429 | |
---|
430 | proc validaterawfile {np inp} { |
---|
431 | global expgui newhist |
---|
432 | if {$inp == ""} return |
---|
433 | if [catch {set in [open $inp r]}] { |
---|
434 | MyMessageBox -parent $np -title "Open error" \ |
---|
435 | -message "Unable to open file $inp" -icon error |
---|
436 | return |
---|
437 | } |
---|
438 | set newhist(banklist) {} |
---|
439 | foreach child [winfo children $np.bank] {destroy $child} |
---|
440 | # is this a properly formatted file? |
---|
441 | # -- are lines the correct length & terminated with a CR-LF? |
---|
442 | fconfigure $in -translation lf |
---|
443 | set i 0 |
---|
444 | while {[set len [gets $in line]] > 0} { |
---|
445 | incr i |
---|
446 | if {$len != 81 || [string range $line end end] != "\r"} { |
---|
447 | set ans [MyMessageBox -parent $np -title "Convert?" \ |
---|
448 | -message "File $inp is not in the correct format for GSAS.\nOK to convert?" \ |
---|
449 | -icon warning -type {OK Quit} -default OK] |
---|
450 | if {$ans == "ok"} { |
---|
451 | # convert and reopen the file |
---|
452 | close $in |
---|
453 | WinCvt $inp $np |
---|
454 | set i 0 |
---|
455 | set in [open $inp r] |
---|
456 | fconfigure $in -translation lf |
---|
457 | set line {} |
---|
458 | } else { |
---|
459 | return |
---|
460 | } |
---|
461 | } |
---|
462 | # scan for BANK lines |
---|
463 | if {[string first BANK $line] == 0} { |
---|
464 | scan $line "BANK%d" num |
---|
465 | lappend newhist(banklist) $num |
---|
466 | # compute last point |
---|
467 | set tmin 0 |
---|
468 | set tmax 0 |
---|
469 | catch { |
---|
470 | scan $line "BANK%d%d%d%s%f%f" num nchan nrec rest start step |
---|
471 | set tmin [expr $start/100.] |
---|
472 | set tmax [expr ($start + $step*($nchan-1))/100.] |
---|
473 | } |
---|
474 | set newhist(tmin$num) $tmin |
---|
475 | set newhist(tmax$num) $tmax |
---|
476 | } |
---|
477 | # check for "Instrument parameter file" line |
---|
478 | if {$i == 2 && [string first "Instrument parameter" $line] == 0} { |
---|
479 | validateinstfile $np \ |
---|
480 | [file join [file dirname $inp] \ |
---|
481 | [string trim [string range $line 26 end]]] |
---|
482 | } |
---|
483 | } |
---|
484 | # were banks found? |
---|
485 | if {$newhist(banklist) == ""} { |
---|
486 | MyMessageBox -parent $np -title "Read error" \ |
---|
487 | -message "File $inp has no BANK lines.\nThis is not a valid GSAS data file." \ |
---|
488 | -icon warning |
---|
489 | return |
---|
490 | } |
---|
491 | # don't use a full path unless needed |
---|
492 | if {[pwd] == [file dirname $inp]} { |
---|
493 | set newhist(rawfile) [file tail $inp] |
---|
494 | } else { |
---|
495 | set newhist(rawfile) $inp |
---|
496 | } |
---|
497 | set row 0 |
---|
498 | set col -1 |
---|
499 | foreach i $newhist(banklist) { |
---|
500 | if {$col > 8} { |
---|
501 | set col -1 |
---|
502 | incr row |
---|
503 | } |
---|
504 | grid [radiobutton $np.bank.$i -text $i -command SetTmax \ |
---|
505 | -variable newhist(banknum) -value $i] \ |
---|
506 | -column [incr col] -row $row -sticky w |
---|
507 | # only 1 choice, so set it |
---|
508 | if {[llength $newhist(banklist)] == 1} { |
---|
509 | set newhist(banknum) $i |
---|
510 | SetTmax |
---|
511 | } else { |
---|
512 | set newhist(2tLimit) {} |
---|
513 | set newhist(LimitMode) {} |
---|
514 | } |
---|
515 | } |
---|
516 | } |
---|
517 | |
---|
518 | proc SetTmax {} { |
---|
519 | global newhist |
---|
520 | set num $newhist(banknum) |
---|
521 | if {$newhist(insttype) == "TOF"} { |
---|
522 | set newhist(2tLimit) [expr {$newhist(tmin$num) / 10.}] |
---|
523 | if {[llength $newhist(banklist)] == $newhist(instbanks)} { |
---|
524 | set newhist(setnum) $newhist(banknum) |
---|
525 | } |
---|
526 | } else { |
---|
527 | set newhist(2tLimit) $newhist(tmax$num) |
---|
528 | } |
---|
529 | set newhist(LimitMode) 1 |
---|
530 | |
---|
531 | } |
---|
532 | |
---|
533 | proc getinstfile {np} { |
---|
534 | global newhist tcl_platform |
---|
535 | if {$tcl_platform(platform) == "windows"} { |
---|
536 | set inp [ |
---|
537 | tk_getOpenFile -parent $np -initialfile $newhist(instfile) -filetypes { |
---|
538 | {"Inst files" .INST} {"Inst files" .INS} |
---|
539 | {"Inst files" .PRM} {"All files" *} |
---|
540 | } |
---|
541 | ] |
---|
542 | } else { |
---|
543 | set inp [ |
---|
544 | tk_getOpenFile -parent $np -initialfile $newhist(instfile) -filetypes { |
---|
545 | {"Inst files" .INS*} {"Inst files" .ins*} |
---|
546 | {"Inst files" .PRM} {"Inst files" .prm} |
---|
547 | {"All files" *} |
---|
548 | } |
---|
549 | ] |
---|
550 | } |
---|
551 | set newhist(setnum) {} |
---|
552 | validateinstfile $np $inp |
---|
553 | } |
---|
554 | |
---|
555 | proc validateinstfile {np inp} { |
---|
556 | global expgui newhist |
---|
557 | if {$inp == ""} return |
---|
558 | if [catch {set in [open $inp r]}] { |
---|
559 | MyMessageBox -parent $np -title "Open error" \ |
---|
560 | -message "Unable to open file $inp" -icon error |
---|
561 | return |
---|
562 | } |
---|
563 | set newhist(instbanks) {} |
---|
564 | foreach child [winfo children $np.set] {destroy $child} |
---|
565 | # is this a properly formatted file? |
---|
566 | # -- are lines the correct length & terminated with a CR-LF? |
---|
567 | fconfigure $in -translation lf |
---|
568 | while {[set len [gets $in line]] > 0} { |
---|
569 | if {$len != 81 || [string range $line end end] != "\r"} { |
---|
570 | set ans [MyMessageBox -parent $np -title "Convert?" \ |
---|
571 | -message "File $inp is not in the correct format for GSAS.\nOK to convert?" \ |
---|
572 | -icon warning -type {OK Quit} -default OK] |
---|
573 | if {$ans == "ok"} { |
---|
574 | # convert and reopen the file |
---|
575 | close $in |
---|
576 | WinCvt $inp $np |
---|
577 | set in [open $inp r] |
---|
578 | fconfigure $in -translation lf |
---|
579 | set line {} |
---|
580 | } else { |
---|
581 | return |
---|
582 | } |
---|
583 | } |
---|
584 | # scan for the INS BANK line |
---|
585 | if {[string first "INS BANK" $line] == 0} { |
---|
586 | set newhist(instbanks) \ |
---|
587 | [string trim [string range $line 12 end]] |
---|
588 | } |
---|
589 | # scan for the INS HTYPE line |
---|
590 | if {[string first "INS HTYPE" $line] == 0} { |
---|
591 | if {[string index [lindex $line 2] 2] == "T"} { |
---|
592 | set newhist(insttype) TOF |
---|
593 | } elseif {[string index [lindex $line 2] 2] == "E"} { |
---|
594 | set newhist(insttype) ED |
---|
595 | } elseif {[string index [lindex $line 2] 1] == "X"} { |
---|
596 | set newhist(insttype) "CW X" |
---|
597 | } else { |
---|
598 | set newhist(insttype) "CW N" |
---|
599 | } |
---|
600 | } |
---|
601 | # scan for the instrument constants |
---|
602 | if {[regexp {INS ([ 1-9][0-9]) ICONS(.*)} $line a b c]} { |
---|
603 | set b [string trim $b] |
---|
604 | set newhist(inst${b}ICONS) [string trim $c] |
---|
605 | } |
---|
606 | if {[regexp {INS ([ 1-9][0-9])I ITYP(.*)} $line a b c]} { |
---|
607 | set b [string trim $b] |
---|
608 | set newhist(inst${b}ITYP) [string trim $c] |
---|
609 | } |
---|
610 | if {[regexp {INS ([ 1-9][0-9])BNKPAR(.*)} $line a b c]} { |
---|
611 | set b [string trim $b] |
---|
612 | set newhist(inst${b}Angle) [string trim [lindex $c 1]] |
---|
613 | } |
---|
614 | } |
---|
615 | # were banks found? |
---|
616 | if {$newhist(instbanks) == ""} { |
---|
617 | MyMessageBox -parent $np -title "Read error" -message \ |
---|
618 | "File $inp has no \"INS BANK\" line.\nThis is not a valid GSAS Instrument Parameter file." \ |
---|
619 | -icon warning |
---|
620 | return |
---|
621 | } |
---|
622 | # don't use a full path unless needed |
---|
623 | if {[pwd] == [file dirname $inp]} { |
---|
624 | set newhist(instfile) [file tail $inp] |
---|
625 | } else { |
---|
626 | set newhist(instfile) $inp |
---|
627 | } |
---|
628 | set col -1 |
---|
629 | set row 0 |
---|
630 | for {set i 1} {$i <= $newhist(instbanks)} {incr i} { |
---|
631 | if {$col > 8} { |
---|
632 | set col -1 |
---|
633 | incr row |
---|
634 | } |
---|
635 | grid [radiobutton $np.set.$i -text $i \ |
---|
636 | -command "PostDummyOpts $np; ValidateDummyHist $np" \ |
---|
637 | -variable newhist(setnum) -value $i] \ |
---|
638 | -column [incr col] -row $row -sticky w |
---|
639 | if {$newhist(instbanks) == 1} {set newhist(setnum) $i} |
---|
640 | } |
---|
641 | if {$newhist(dummy)} {PostDummyOpts $np; ValidateDummyHist $np} |
---|
642 | LabelInstParm |
---|
643 | } |
---|
644 | |
---|
645 | proc addhist {np} { |
---|
646 | global expgui newhist tcl_platform expmap |
---|
647 | if {$newhist(dummy)} { |
---|
648 | AddDummyHist $np |
---|
649 | return |
---|
650 | } |
---|
651 | # validate the input |
---|
652 | set err {} |
---|
653 | if {[string trim $newhist(rawfile)] == ""} { |
---|
654 | append err " No data file specified\n" |
---|
655 | } |
---|
656 | if {[string trim $newhist(instfile)] == ""} { |
---|
657 | append err " No instrument parameter file specified\n" |
---|
658 | } |
---|
659 | if {[string trim $newhist(banknum)] == ""} { |
---|
660 | append err " Bank number must be specified\n" |
---|
661 | } elseif {[catch {expr $newhist(banknum)}]} { |
---|
662 | append err " Bank number is not valid\n" |
---|
663 | } |
---|
664 | if {[string trim $newhist(setnum)] == ""} { |
---|
665 | append err " Parameter set number must be specified\n" |
---|
666 | } elseif {[catch {expr $newhist(setnum)}]} { |
---|
667 | append err " Parameter set number is not valid\n" |
---|
668 | } |
---|
669 | if {[string trim $newhist(2tLimit)] == ""} { |
---|
670 | append err " 2Theta/d-space limit must be specified\n" |
---|
671 | } elseif {[catch {expr $newhist(2tLimit)}]} { |
---|
672 | append err " The 2Theta/d-space limit is not valid\n" |
---|
673 | } elseif {$newhist(2tLimit) <= 0} { |
---|
674 | append err " The 2Theta/d-space limit is not valid\n" |
---|
675 | } |
---|
676 | if {[string trim $newhist(LimitMode)] == ""} { |
---|
677 | append err " Please choose between either a 2Theta, Q or d-space limit\n" |
---|
678 | } |
---|
679 | |
---|
680 | if {$err != ""} { |
---|
681 | MyMessageBox -parent $np -title "Add Histogram Error" \ |
---|
682 | -message "The following error(s) were found in your input:\n$err" \ |
---|
683 | -icon error -type ok -default ok \ |
---|
684 | -helplink "expgui3.html AddHistErr" |
---|
685 | return |
---|
686 | } |
---|
687 | |
---|
688 | # ok do it! |
---|
689 | set fp [open exptool.in w] |
---|
690 | puts $fp "H" |
---|
691 | if {$tcl_platform(platform) == "windows"} { |
---|
692 | puts $fp [file attributes $newhist(rawfile) -shortname] |
---|
693 | puts $fp [file attributes $newhist(instfile) -shortname] |
---|
694 | } else { |
---|
695 | puts $fp $newhist(rawfile) |
---|
696 | puts $fp $newhist(instfile) |
---|
697 | } |
---|
698 | puts $fp $newhist(banknum) |
---|
699 | puts $fp $newhist(setnum) |
---|
700 | if {$newhist(LimitMode) == 1} { |
---|
701 | puts $fp "T" |
---|
702 | puts $fp "$newhist(2tLimit)" |
---|
703 | } elseif {$newhist(LimitMode) == 2} { |
---|
704 | puts $fp "D" |
---|
705 | set Q 100 |
---|
706 | catch {set Q [expr {4*acos(0)/$newhist(2tLimit)}]} |
---|
707 | puts $fp "$Q" |
---|
708 | } else { |
---|
709 | puts $fp "D" |
---|
710 | puts $fp "$newhist(2tLimit)" |
---|
711 | } |
---|
712 | puts $fp "/" |
---|
713 | puts $fp "X" |
---|
714 | puts $fp "X" |
---|
715 | close $fp |
---|
716 | global tcl_platform |
---|
717 | # Save the current exp file |
---|
718 | savearchiveexp |
---|
719 | # disable the file changed monitor |
---|
720 | set expgui(expModifiedLast) 0 |
---|
721 | set expnam [file root [file tail $expgui(expfile)]] |
---|
722 | catch { |
---|
723 | if {$tcl_platform(platform) == "windows"} { |
---|
724 | exec [file join $expgui(gsasexe) exptool.exe] $expnam \ |
---|
725 | < exptool.in >& exptool.out |
---|
726 | } else { |
---|
727 | exec [file join $expgui(gsasexe) exptool] $expnam \ |
---|
728 | < exptool.in >& exptool.out |
---|
729 | } |
---|
730 | } errmsg |
---|
731 | # load the revised exp file |
---|
732 | set oldpowderlist $expmap(powderlist) |
---|
733 | loadexp $expgui(expfile) |
---|
734 | set fp [open exptool.out r] |
---|
735 | set out [read $fp] |
---|
736 | close $fp |
---|
737 | destroy $np |
---|
738 | set err 0 |
---|
739 | if {[llength $oldpowderlist] == [llength $expmap(powderlist)]} {set err 1} |
---|
740 | if {$errmsg != ""} { |
---|
741 | append errmsg "\n" $out |
---|
742 | set err 1 |
---|
743 | } else { |
---|
744 | set errmsg $out |
---|
745 | } |
---|
746 | if {$expgui(showexptool) || $err} { |
---|
747 | set msg "Please review the result from adding the histogram" |
---|
748 | if {$err} {append msg "\nIt appears an error occurred!"} |
---|
749 | ShowBigMessage $np $msg $errmsg OK "" $err |
---|
750 | } |
---|
751 | file delete exptool.in exptool.out |
---|
752 | # set the powpref warning (2 = required) |
---|
753 | set expgui(needpowpref) 2 |
---|
754 | set msg "A histogram was added" |
---|
755 | if {[string first $msg $expgui(needpowpref_why)] == -1} { |
---|
756 | append expgui(needpowpref_why) "\t$msg\n" |
---|
757 | } |
---|
758 | # select the most recently added histogram |
---|
759 | if {!$err} { |
---|
760 | set i [llength $expmap(histlistboxcontents)] |
---|
761 | if {$i > 0} { |
---|
762 | incr i -1 |
---|
763 | set expgui(curhist) $i |
---|
764 | sethistlist |
---|
765 | } |
---|
766 | } |
---|
767 | } |
---|
768 | |
---|
769 | proc RunRawplot {parent} { |
---|
770 | global newhist tcl_platform |
---|
771 | set f1 $newhist(rawfile) |
---|
772 | set f2 $newhist(instfile) |
---|
773 | # for Windows put a message on top, in case file names must be shortened |
---|
774 | if {$tcl_platform(platform) == "windows"} { |
---|
775 | catch {set f1 [file nativename \ |
---|
776 | [file attributes $newhist(rawfile) -shortname]]} |
---|
777 | catch {set f2 [file nativename \ |
---|
778 | [file attributes $newhist(instfile) -shortname]]} |
---|
779 | } |
---|
780 | if {$f1 != "" || $f2 != ""} { |
---|
781 | #set msg "Note: input to RAWPLOT\n" |
---|
782 | #if {$f1 != ""} {append msg "data file: $f1\n"} |
---|
783 | #if {$f2 != ""} {append msg "instrument file: $f2"} |
---|
784 | catch {toplevel $parent.msg} |
---|
785 | catch {eval destroy [winfo children $parent.msg]} |
---|
786 | wm title $parent.msg "File names" |
---|
787 | grid [label $parent.msg.1 \ |
---|
788 | -text "File names to be input to RAWPLOT" \ |
---|
789 | -justify center -anchor center] \ |
---|
790 | -col 0 -row 0 -columnspan 2 |
---|
791 | if {$f1 != ""} { |
---|
792 | grid [label $parent.msg.2a \ |
---|
793 | -text "Raw histogram: $f1" \ |
---|
794 | -justify center -anchor e] \ |
---|
795 | -col 0 -row 1 |
---|
796 | grid [button $parent.msg.2b \ |
---|
797 | -command "clipboard clear; clipboard append $f1" \ |
---|
798 | -text "put name\nin clipboard"] \ |
---|
799 | -col 1 -row 1 |
---|
800 | } |
---|
801 | if {$f2 != ""} { |
---|
802 | grid [label $parent.msg.3a \ |
---|
803 | -text "Raw histogram: $f2" \ |
---|
804 | -justify center -anchor e] \ |
---|
805 | -col 0 -row 2 |
---|
806 | grid [button $parent.msg.3b \ |
---|
807 | -command "clipboard clear; clipboard append $f2" \ |
---|
808 | -text "put name\nin clipboard"] \ |
---|
809 | -col 1 -row 2 |
---|
810 | } |
---|
811 | grid [button $parent.msg.4 \ |
---|
812 | -command "destroy $parent.msg" \ |
---|
813 | -text "Close"] \ |
---|
814 | -col 0 -columnspan 2 -row 9 |
---|
815 | } |
---|
816 | # start RAWPLOT |
---|
817 | runGSASprog rawplot 1 |
---|
818 | if {[winfo exists $parent.msg]} {raise $parent.msg} |
---|
819 | update |
---|
820 | } |
---|
821 | #--- Dummy histogram stuff |
---|
822 | proc PostDummyOpts {np} { |
---|
823 | global newhist |
---|
824 | if {$newhist(dummy)} { |
---|
825 | trace variable newhist(tmin) w "ValidateDummyHist $np" |
---|
826 | trace variable newhist(tmax) w "ValidateDummyHist $np" |
---|
827 | trace variable newhist(tstep) w "ValidateDummyHist $np" |
---|
828 | foreach w {l1 t1 lbank} { |
---|
829 | $np.$w config -fg grey |
---|
830 | } |
---|
831 | $np.d1.m1 config -text {} |
---|
832 | $np.d1.m2 config -text {} |
---|
833 | $np.b1 config -state disabled |
---|
834 | grid forget $np.l3 $np.e3 $np.cb3 $np.cb4 $np.cb5 $np.bank $np.f6a |
---|
835 | grid $np.dl1 -column 0 -row 18 |
---|
836 | grid $np.d1 -column 1 -row 18 -rowspan 2 -columnspan 4 -sticky e |
---|
837 | grid $np.dl3 -column 0 -columnspan 99 -row 20 -sticky ew |
---|
838 | if {$newhist(insttype) == "TOF"} { |
---|
839 | $np.dl1 config -text "Data range:\n(TOF)" |
---|
840 | $np.d1.lu config -text millisec |
---|
841 | grid $np.dl2 -column 0 -row 19 |
---|
842 | catch { |
---|
843 | set s $newhist(setnum) |
---|
844 | foreach {x tmin tmax x} $newhist(inst${s}ITYP) {} |
---|
845 | $np.d1.m1 config -text $tmin |
---|
846 | $np.d1.m2 config -text $tmax |
---|
847 | } |
---|
848 | } elseif {[lindex $newhist(insttype) 0] == "CW"} { |
---|
849 | $np.dl1 config -text "Data range:\n(2Theta)" |
---|
850 | $np.d1.lu config -text degrees |
---|
851 | #grid forget $np.dl2 |
---|
852 | $np.d1.m1 config -text >0. |
---|
853 | $np.d1.m2 config -text <180. |
---|
854 | } elseif {$newhist(insttype) == "ED"} { |
---|
855 | $np.dl1 config -text "Data range:\n(Energy)" |
---|
856 | $np.d1.lu config -text KeV |
---|
857 | $np.d1.m1 config -text 1. |
---|
858 | $np.d1.m2 config -text 200. |
---|
859 | grid $np.dl2 -column 0 -row 19 |
---|
860 | } else { |
---|
861 | $np.dl1 config -text "No file\nselected" |
---|
862 | $np.d1.lu config -text {} |
---|
863 | } |
---|
864 | } else { |
---|
865 | foreach var {tmin tmax tstep} { |
---|
866 | foreach v [ trace vinfo newhist($var)] { |
---|
867 | eval trace vdelete newhist($var) $v |
---|
868 | } |
---|
869 | } |
---|
870 | grid forget $np.dl1 $np.d1 $np.dl2 $np.dl3 |
---|
871 | foreach w {l1 t1 lbank} { |
---|
872 | $np.$w config -fg black |
---|
873 | } |
---|
874 | $np.b1 config -state normal |
---|
875 | grid $np.bank -column 2 -row 3 -columnspan 7 -sticky ew |
---|
876 | grid $np.f6a -column 4 -row 18 -rowspan 3 |
---|
877 | grid $np.l3 -column 0 -row 18 -rowspan 3 |
---|
878 | grid $np.e3 -column 1 -row 18 -rowspan 3 |
---|
879 | grid $np.cb3 -column 2 -row 18 -sticky w |
---|
880 | grid $np.cb4 -column 2 -row 20 -sticky w |
---|
881 | grid $np.cb5 -column 2 -row 19 -sticky w |
---|
882 | } |
---|
883 | } |
---|
884 | |
---|
885 | proc ValidateDummyHist {np args} { |
---|
886 | # validate input |
---|
887 | global newhist |
---|
888 | set msg {} |
---|
889 | $np.dl3 config -text "\n" |
---|
890 | foreach e {e1 e2 e3} v {tmin tmax tstep} { |
---|
891 | if [catch {expr $newhist($v)}] { |
---|
892 | $np.d1.$e config -fg red |
---|
893 | append msg "Value of $newhist($v) is invalid for $v\n" |
---|
894 | } else { |
---|
895 | $np.d1.$e config -fg black |
---|
896 | } |
---|
897 | } |
---|
898 | if {[catch {expr $newhist(setnum)}]} { |
---|
899 | append msg "An instrument file bank number must be selected\n" |
---|
900 | } elseif {$newhist(setnum) <= 0 || \ |
---|
901 | $newhist(setnum) > $newhist(instbanks)} { |
---|
902 | append msg "An invalid instrument file bank has been selected\n" |
---|
903 | } |
---|
904 | |
---|
905 | if {$msg != ""} {return $msg} |
---|
906 | |
---|
907 | if {$newhist(tmax) <= $newhist(tmin)} { |
---|
908 | $np.d1.e1 config -fg red |
---|
909 | $np.d1.e2 config -fg red |
---|
910 | return "Tmax <= Tmin\n" |
---|
911 | } |
---|
912 | |
---|
913 | |
---|
914 | set dmin -1 |
---|
915 | set dmax -1 |
---|
916 | if {$newhist(insttype) == "TOF"} { |
---|
917 | catch { |
---|
918 | set s $newhist(setnum) |
---|
919 | foreach {x tmin tmax x} $newhist(inst${s}ITYP) {} |
---|
920 | if {$newhist(tmin) <$tmin } { |
---|
921 | $np.d1.e1 config -fg red |
---|
922 | append msg "Min value of $newhist(tmin) msec is invalid.\n" |
---|
923 | } |
---|
924 | if {$newhist(tmax) >$tmax } { |
---|
925 | $np.d1.e2 config -fg red |
---|
926 | append msg "Max value of $newhist(tmax) msec is invalid.\n" |
---|
927 | } |
---|
928 | set s $newhist(setnum) |
---|
929 | set dmin [expr {1000. * $newhist(tmin) / \ |
---|
930 | [lindex $newhist(inst${s}ICONS) 0]}] |
---|
931 | set dmax [expr {1000. * $newhist(tmax) / \ |
---|
932 | [lindex $newhist(inst${s}ICONS) 0]}] |
---|
933 | } |
---|
934 | } elseif {[lindex $newhist(insttype) 0] == "CW"} { |
---|
935 | if {$newhist(tmin) <= 0 } { |
---|
936 | $np.d1.e1 config -fg red |
---|
937 | append msg "Min value of $newhist(tmin) degrees is invalid.\n" |
---|
938 | } |
---|
939 | if {$newhist(tmax) >=180 } { |
---|
940 | $np.d1.e2 config -fg red |
---|
941 | append msg "Max value of $newhist(tmax) degrees is invalid.\n" |
---|
942 | } |
---|
943 | catch { |
---|
944 | set s $newhist(setnum) |
---|
945 | set dmin [expr {[lindex $newhist(inst${s}ICONS) 0]\ |
---|
946 | * 0.5 / sin(acos(0.)*$newhist(tmax)/180.)}] |
---|
947 | set dmax [expr {[lindex $newhist(inst${s}ICONS) 0]\ |
---|
948 | * 0.5 / sin(acos(0.)*$newhist(tmin)/180.)}] |
---|
949 | } |
---|
950 | } else { |
---|
951 | if {$newhist(tmin) <1 } { |
---|
952 | $np.d1.e1 config -fg red |
---|
953 | append msg "Min value of $newhist(tmin) KeV is invalid.\n" |
---|
954 | } |
---|
955 | if {$newhist(tmax) >200 } { |
---|
956 | $np.d1.e2 config -fg red |
---|
957 | append msg "Max value of $newhist(tmax) KeV is invalid.\n" |
---|
958 | } |
---|
959 | catch { |
---|
960 | set s $newhist(setnum) |
---|
961 | set ang [lindex $newhist(inst${s}ICONS) 0] |
---|
962 | set dmin [expr {12.398/ (2.0*sin($ang*acos(0.)/180) * \ |
---|
963 | $newhist(tmax))}] |
---|
964 | set dmax [expr {12.398/ (2.0*sin($ang*acos(0.)/180) * \ |
---|
965 | $newhist(tmin))}] |
---|
966 | } |
---|
967 | } |
---|
968 | if {$msg != ""} {return $msg} |
---|
969 | set pnts -1 |
---|
970 | catch { |
---|
971 | set pnts [expr {1+int(($newhist(tmax) - $newhist(tmin))/$newhist(tstep))}] |
---|
972 | set qmin [expr {4.*acos(0)/$dmax}] |
---|
973 | set qmax [expr {4.*acos(0)/$dmin}] |
---|
974 | } |
---|
975 | if {$pnts <= 0} { |
---|
976 | $np.d1.e3 config -fg red |
---|
977 | append msg "Step value of $newhist(tstep) is invalid.\n" |
---|
978 | } |
---|
979 | if {$pnts >20000} { |
---|
980 | $np.d1.e3 config -fg red |
---|
981 | append msg "Step value of $newhist(tstep) is too small (>20000 points).\n" |
---|
982 | } |
---|
983 | if {$msg != ""} {return $msg} |
---|
984 | if {$dmin > 0 && $dmax > 0} { |
---|
985 | catch { |
---|
986 | set msg [format \ |
---|
987 | { %d points.%s D-space range: %.2f-%.2f A, Q: %.2f-%.2f/A} \ |
---|
988 | $pnts "\n" $dmin $dmax $qmin $qmax] |
---|
989 | $np.dl3 config -text $msg |
---|
990 | } |
---|
991 | } |
---|
992 | if {$msg != ""} {return ""} |
---|
993 | $np.dl3 config -text [format { %d points.%s Range: ?} $pnts "\n"] |
---|
994 | return "Invalid data range -- something is wrong!" |
---|
995 | } |
---|
996 | |
---|
997 | proc AddDummyHist {np} { |
---|
998 | global newhist expgui expmap |
---|
999 | global tcl_platform |
---|
1000 | set msg [ValidateDummyHist $np] |
---|
1001 | if {$msg != ""} { |
---|
1002 | MyMessageBox -parent $np -title "Add Histogram Error" \ |
---|
1003 | -message "The following error(s) were found in your input:\n$msg" \ |
---|
1004 | -icon error -type ok -default ok \ |
---|
1005 | -helplink "expgui3.html AddHistErr" |
---|
1006 | return |
---|
1007 | } |
---|
1008 | set fp [open exptool.in w] |
---|
1009 | puts $fp "D" |
---|
1010 | puts $fp $newhist(instfile) |
---|
1011 | puts $fp $newhist(setnum) |
---|
1012 | if {$newhist(insttype) == "TOF"} { |
---|
1013 | puts $fp "C" |
---|
1014 | } |
---|
1015 | puts $fp $newhist(tmin) |
---|
1016 | puts $fp $newhist(tmax) |
---|
1017 | puts $fp $newhist(tstep) |
---|
1018 | puts $fp "X" |
---|
1019 | puts $fp "0" |
---|
1020 | close $fp |
---|
1021 | # Save the current exp file |
---|
1022 | savearchiveexp |
---|
1023 | # disable the file changed monitor |
---|
1024 | set expgui(expModifiedLast) 0 |
---|
1025 | set expnam [file root [file tail $expgui(expfile)]] |
---|
1026 | set err [catch { |
---|
1027 | if {$tcl_platform(platform) == "windows"} { |
---|
1028 | exec [file join $expgui(gsasexe) exptool.exe] $expnam \ |
---|
1029 | < exptool.in >& exptool.out |
---|
1030 | } else { |
---|
1031 | exec [file join $expgui(gsasexe) exptool] $expnam \ |
---|
1032 | < exptool.in >& exptool.out |
---|
1033 | } |
---|
1034 | } errmsg ] |
---|
1035 | # load the revised exp file |
---|
1036 | set oldpowderlist $expmap(powderlist) |
---|
1037 | loadexp $expgui(expfile) |
---|
1038 | set fp [open exptool.out r] |
---|
1039 | set out [read $fp] |
---|
1040 | close $fp |
---|
1041 | if {[llength $oldpowderlist] == [llength $expmap(powderlist)]} {set err 1} |
---|
1042 | if {$errmsg != ""} { |
---|
1043 | append errmsg "\n" $out |
---|
1044 | } else { |
---|
1045 | set errmsg $out |
---|
1046 | } |
---|
1047 | if {[regexp {\(P,H,A\)} $out]} { |
---|
1048 | set msg {You must upgrade the EXPTOOL program.} |
---|
1049 | append msg { This version cannot add dummy histograms.} |
---|
1050 | MyMessageBox -icon error -title "Old EXPTOOL program" \ |
---|
1051 | -message $msg -parent $np \ |
---|
1052 | -helplink "expguierr.html OldEXPTOOL" |
---|
1053 | # update the documentation & link |
---|
1054 | destroy $np |
---|
1055 | } elseif {$expgui(showexptool) || $err} { |
---|
1056 | set msg "Please review the result from adding the dummy histogram" |
---|
1057 | if {$err} {append msg "\nIt appears an error occurred!"} |
---|
1058 | ShowBigMessage $np $msg $errmsg OK "" $err |
---|
1059 | } else { |
---|
1060 | destroy $np |
---|
1061 | } |
---|
1062 | file delete exptool.in exptool.out |
---|
1063 | # set the powpref warning (2 = required) |
---|
1064 | set expgui(needpowpref) 2 |
---|
1065 | set msg "A histogram was added" |
---|
1066 | if {[string first $msg $expgui(needpowpref_why)] == -1} { |
---|
1067 | append expgui(needpowpref_why) "\t$msg\n" |
---|
1068 | } |
---|
1069 | } |
---|
1070 | |
---|
1071 | |
---|
1072 | |
---|
1073 | #----------- Add Atoms routines ---------------------------------------- |
---|
1074 | proc MakeAddAtomsBox {phase "atomlist {}"} { |
---|
1075 | global expmap expgui |
---|
1076 | |
---|
1077 | # is there room for more atoms? Well, we will check this someday |
---|
1078 | if {$phase == ""} return |
---|
1079 | if {[llength $phase] != 1} return |
---|
1080 | |
---|
1081 | set top .newatoms |
---|
1082 | catch {destroy $top} |
---|
1083 | toplevel $top |
---|
1084 | bind $top <Key-F1> "MakeWWWHelp expgui2.html addatoms" |
---|
1085 | |
---|
1086 | grid [label $top.l1 -relief groove -bd 4 -anchor center\ |
---|
1087 | -text "Adding atoms to phase #$phase"] \ |
---|
1088 | -column 0 -row 0 \ |
---|
1089 | -sticky we -columnspan 10 |
---|
1090 | |
---|
1091 | grid [canvas $top.canvas \ |
---|
1092 | -scrollregion {0 0 5000 500} -width 0 -height 250 \ |
---|
1093 | -yscrollcommand "$top.scroll set"] \ |
---|
1094 | -column 0 -row 2 -columnspan 4 -sticky nsew |
---|
1095 | grid columnconfigure $top 3 -weight 1 |
---|
1096 | grid rowconfigure $top 2 -weight 1 |
---|
1097 | grid rowconfigure $top 1 -pad 5 |
---|
1098 | scrollbar $top.scroll \ |
---|
1099 | -command "$top.canvas yview" |
---|
1100 | frame $top.canvas.fr |
---|
1101 | $top.canvas create window 0 0 -anchor nw -window $top.canvas.fr |
---|
1102 | |
---|
1103 | set np $top.canvas.fr |
---|
1104 | set row 0 |
---|
1105 | set col 0 |
---|
1106 | grid [label $np.l_${row}0 -text " # "] -column $col -row $row |
---|
1107 | foreach i {Atom\ntype Name x y z Occ Uiso} \ |
---|
1108 | var {type name x y z occ uiso} { |
---|
1109 | grid [button $np.l_${row}$i -text $i -padx 0 -pady 0 \ |
---|
1110 | -command "sortAddAtoms $phase $top $var"] \ |
---|
1111 | -column [incr col] -row $row -sticky nsew |
---|
1112 | } |
---|
1113 | grid [label $np.l_${row}Use -text Use\nFlag] -column [incr col] -row $row |
---|
1114 | |
---|
1115 | set expgui(SetAddAtomsScroll) 0 |
---|
1116 | set i [llength $atomlist] |
---|
1117 | if {$i == 0} {incr i} |
---|
1118 | for {set j 0} {$j < $i} {incr j} { |
---|
1119 | MakeAddAtomsRow $top |
---|
1120 | } |
---|
1121 | set row 0 |
---|
1122 | foreach item $atomlist { |
---|
1123 | incr row |
---|
1124 | foreach val $item w {n x y z t o u} { |
---|
1125 | if {$val != ""} { |
---|
1126 | $np.e${row}$w delete 0 end |
---|
1127 | $np.e${row}$w insert end $val |
---|
1128 | } |
---|
1129 | } |
---|
1130 | } |
---|
1131 | bind $top <Configure> "SetAddAtomsScroll $top" |
---|
1132 | grid rowconfigure $top 3 -min 10 |
---|
1133 | grid [button $top.b1 -text "Add Atoms"\ |
---|
1134 | -command "addatom $phase $top"] -column 0 -row 5 -sticky w |
---|
1135 | bind $top <Return> "addatom $phase $top" |
---|
1136 | grid [button $top.b2 -text Cancel \ |
---|
1137 | -command "destroy $top"] -column 1 -row 5 -sticky w |
---|
1138 | grid [button $top.help -text Help -bg yellow \ |
---|
1139 | -command "MakeWWWHelp expgui2.html addatoms"] \ |
---|
1140 | -column 0 -columnspan 2 -row 4 |
---|
1141 | |
---|
1142 | # get the input formats if not already defined |
---|
1143 | GetImportFormats |
---|
1144 | if {[llength $expgui(importFormatList)] > 0} { |
---|
1145 | grid [frame $top.fr -bd 4 -relief groove] \ |
---|
1146 | -column 3 -row 5 -columnspan 2 -sticky e |
---|
1147 | grid [button $top.fr.b3 -text "Import atoms from: " \ |
---|
1148 | -command "ImportAtoms \$expgui(importFormat) $top $phase"] \ |
---|
1149 | -column 0 -row 0 -sticky e |
---|
1150 | set menu [eval tk_optionMenu $top.fr.b4 expgui(importFormat) \ |
---|
1151 | $expgui(importFormatList)] |
---|
1152 | for {set i 0} {$i <= [$menu index end]} {incr i} { |
---|
1153 | $menu entryconfig $i -command "ImportAtoms \$expgui(importFormat) $top $phase" |
---|
1154 | } |
---|
1155 | grid $top.fr.b4 -column 1 -row 0 -sticky w |
---|
1156 | grid rowconfig $top.fr 0 -pad 10 |
---|
1157 | grid columnconfig $top.fr 0 -pad 10 |
---|
1158 | grid columnconfig $top.fr 1 -pad 10 |
---|
1159 | } |
---|
1160 | |
---|
1161 | grid [button $top.b3 -text "More atom boxes" \ |
---|
1162 | -command "MakeAddAtomsRow $top"] -column 3 \ |
---|
1163 | -columnspan 2 -row 4 -sticky e |
---|
1164 | |
---|
1165 | wm title $top "add new atom" |
---|
1166 | |
---|
1167 | # set grab, etc. |
---|
1168 | putontop $top |
---|
1169 | |
---|
1170 | tkwait window $top |
---|
1171 | |
---|
1172 | # fix grab... |
---|
1173 | afterputontop |
---|
1174 | } |
---|
1175 | |
---|
1176 | proc MakeAddAtomsRow {top} { |
---|
1177 | set np $top.canvas.fr |
---|
1178 | set col -1 |
---|
1179 | set row 1 |
---|
1180 | # find an empty row |
---|
1181 | while {![catch {grid info $np.e${row}t}]} {incr row} |
---|
1182 | grid [label $np.e${row}num -text $row] -column [incr col] -row $row |
---|
1183 | grid [entry $np.e${row}t -width 5] -column [incr col] -row $row |
---|
1184 | grid [entry $np.e${row}n -width 8] -column [incr col] -row $row |
---|
1185 | foreach i {x y z o u} { |
---|
1186 | grid [entry $np.e${row}$i -width 9] -column [incr col] -row $row |
---|
1187 | } |
---|
1188 | grid [checkbutton $np.e${row}use -variable expgui(UseAtom$row)] \ |
---|
1189 | -column [incr col] -row $row |
---|
1190 | # default occupancy |
---|
1191 | $np.e${row}o delete 0 end |
---|
1192 | $np.e${row}o insert end 1.0 |
---|
1193 | # default Uiso |
---|
1194 | $np.e${row}u delete 0 end |
---|
1195 | $np.e${row}u insert end 0.025 |
---|
1196 | # default label |
---|
1197 | $np.e${row}n delete 0 end |
---|
1198 | $np.e${row}n insert end (default) |
---|
1199 | # use by default |
---|
1200 | $np.e${row}use select |
---|
1201 | |
---|
1202 | SetAddAtomsScroll $top |
---|
1203 | return $row |
---|
1204 | } |
---|
1205 | |
---|
1206 | proc SetAddAtomsScroll {top} { |
---|
1207 | global expgui |
---|
1208 | if $expgui(SetAddAtomsScroll) return |
---|
1209 | # prevent reentrance |
---|
1210 | set expgui(SetAddAtomsScroll) 1 |
---|
1211 | update |
---|
1212 | set sizes [grid bbox $top.canvas.fr] |
---|
1213 | $top.canvas config -scrollregion $sizes -width [lindex $sizes 2] |
---|
1214 | # use the scroll for BIG atom lists |
---|
1215 | if {[lindex $sizes 3] > [winfo height $top.canvas]} { |
---|
1216 | grid $top.scroll -sticky ns -column 4 -row 2 |
---|
1217 | } else { |
---|
1218 | grid forget $top.scroll |
---|
1219 | } |
---|
1220 | update |
---|
1221 | set expgui(SetAddAtomsScroll) 0 |
---|
1222 | } |
---|
1223 | |
---|
1224 | # Validate the atoms in the atoms add/phase replace box |
---|
1225 | # returns a null string on error or a list of atoms |
---|
1226 | proc ValidateAtomsBox {top np} { |
---|
1227 | global expgui |
---|
1228 | set row 0 |
---|
1229 | # loop over the defined rows |
---|
1230 | set err {} |
---|
1231 | set atomlist {} |
---|
1232 | set validatmtypes { |
---|
1233 | H H-1 H_1 H_2 D H_3 HE HE_3 HE_4 LI LI+1 LI_6 LI_7 BE BE+2 B B_10 |
---|
1234 | B_11 C CV C_12 C_13 N N_14 N_15 O O-1 O_16 O_17 O_18 F F-1 F_19 NE |
---|
1235 | NE_20 NE_21 NE_22 NA NA+1 NA_23 MG MG+2 MG_24 MG_25 MG_26 AL AL+3 |
---|
1236 | AL_27 SI SI+4 SIV SI_28 SI_29 SI_30 P P_31 S S_32 S_33 S_34 CL CL-1 |
---|
1237 | CL_35 CL_37 AR AR_36 AR_40 K K+1 K_39 K_41 CA CA+2 CA_40 CA_44 SC SC+3 |
---|
1238 | SC_45 TI TI+2 TI+3 TI+4 TI_46 TI_47 TI_48 TI_49 TI_50 V V+2 V+3 V+5 |
---|
1239 | V_51 CR CR+2 CR+3 CR_50 CR_52 CR_53 CR_54 MN MN+2 MN+3 MN+4 MN_55 FE |
---|
1240 | FE+2 FE+3 FE_54 FE_56 FE_57 FE_58 CO CO+2 CO+3 CO_59 NI NI+2 NI+3 |
---|
1241 | NI_58 NI_60 NI_61 NI_62 NI_64 CU CU+1 CU+2 CU_63 CU_65 ZN ZN+2 ZN_64 |
---|
1242 | ZN_66 ZN_67 ZN_68 GA GA+3 GE GE+4 AS AS_75 SE BR BR-1 BR_79 BR_81 KR |
---|
1243 | RB RB+1 SR SR+2 Y Y+3 Y_89 ZR ZR+4 NB NB+3 NB+5 NB_93 MO MO+3 MO+5 |
---|
1244 | MO+6 TC TC_98 RU RU+3 RU+4 RH RH+3 RH+4 RH_103 PD PD+2 PD+4 AG AG+1 |
---|
1245 | AG+2 CD CD+2 CD_112 CD_113 CD_114 CD_116 IN IN+3 IN_113 IN_115 SN SN+2 |
---|
1246 | SN+4 SB SB+3 SB+5 TE I I-1 I_127 XE CS CS+1 CS_133 BA BA+2 LA LA+3 CE |
---|
1247 | CE+3 CE+4 PR PR+3 PR+4 PR_141 ND ND+3 PM PM+3 PM_147 SM SM+3 SM_152 |
---|
1248 | SM_154 EU EU+2 EU+3 EU_153 GD GD+3 GD_160 TB TB+3 TB_159 DY DY+3 HO |
---|
1249 | HO+3 HO_165 ER ER+3 TM TM+3 TM_169 YB YB+2 YB+3 LU LU+3 HF HF+4 TA |
---|
1250 | TA+5 TA_181 W W+6 RE OS OS+4 IR IR+3 IR+4 PT PT+2 PT+4 AU AU+1 AU+3 |
---|
1251 | AU_197 HG HG+1 HG+2 TL TL+1 TL+3 PB PB+2 PB+4 BI BI+3 BI+5 BI_209 PO |
---|
1252 | PO_210 AT AT_210 RN RN_222 FR FR_223 RA RA+2 RA_226 AC AC+3 AC_227 TH |
---|
1253 | TH+4 TH_232 PA PA_231 U U+3 U+4 U+6 U_235 U_238 NP NP+3 NP+4 NP+6 |
---|
1254 | NP_237 PU PU+3 PU+4 PU+6 PU_239 PU_240 PU_242 AM AM_243 CM CM_244 BK |
---|
1255 | BK_247 CF CF_249 |
---|
1256 | } |
---|
1257 | # loop over the defined rows |
---|
1258 | while {![catch {grid info $np.e[incr row]t}]} { |
---|
1259 | if !{$expgui(UseAtom$row)} continue |
---|
1260 | # ignore blank entries |
---|
1261 | set line {} |
---|
1262 | foreach i {t x y z} { |
---|
1263 | append line [string trim [$np.e${row}$i get]] |
---|
1264 | } |
---|
1265 | if {$line == ""} continue |
---|
1266 | |
---|
1267 | # validate the input |
---|
1268 | if {[set type [string trim [$np.e${row}t get]]] == ""} { |
---|
1269 | append err " line $row: No atom type specified\n" |
---|
1270 | } |
---|
1271 | if {[lsearch $validatmtypes [string toupper $type]] == -1} { |
---|
1272 | append err " line $row: Atom type $type is invalid for GSAS\n" |
---|
1273 | } |
---|
1274 | set name [string trim [$np.e${row}n get]] |
---|
1275 | if {$name == "(default)"} {set name "/"} |
---|
1276 | if {$name == ""} {set name "/"} |
---|
1277 | foreach i {x y z o u} n {x y z Occ Uiso} { |
---|
1278 | if {[set $i [string trim [$np.e${row}$i get]]] == ""} { |
---|
1279 | append err " line $row: No value specified for $n\n" |
---|
1280 | } elseif {[catch {expr [set $i]}]} { |
---|
1281 | append err " line $row: The value for $n is invalid\n" |
---|
1282 | } |
---|
1283 | } |
---|
1284 | lappend atomlist "$type $x $y $z $o $name I $u" |
---|
1285 | } |
---|
1286 | if {$err != ""} { |
---|
1287 | MyMessageBox -icon warning -message "Note Errors:\n$err" -parent $top |
---|
1288 | return {} |
---|
1289 | } |
---|
1290 | if {[llength $atomlist] == 0} { |
---|
1291 | MyMessageBox -icon warning -message "No atoms to load!" -parent $top |
---|
1292 | return {} |
---|
1293 | } |
---|
1294 | return $atomlist |
---|
1295 | } |
---|
1296 | |
---|
1297 | proc addatom {phase top} { |
---|
1298 | global expgui env expmap |
---|
1299 | set np $top.canvas.fr |
---|
1300 | # validate the atoms info |
---|
1301 | set atomlist [ValidateAtomsBox $top $np] |
---|
1302 | if {$atomlist == ""} return |
---|
1303 | |
---|
1304 | # ok add the atoms! |
---|
1305 | set fp [open exptool.in w] |
---|
1306 | puts $fp "A" |
---|
1307 | puts $fp $phase |
---|
1308 | # number of atoms |
---|
1309 | puts $fp [llength $atomlist] |
---|
1310 | foreach atomline $atomlist { |
---|
1311 | puts $fp $atomline |
---|
1312 | } |
---|
1313 | close $fp |
---|
1314 | # needed in UNIX |
---|
1315 | set env(ATOMDATA) [file join $expgui(gsasdir) data atmdata.dat] |
---|
1316 | set env(gsas) [file nativename $expgui(gsasdir)] |
---|
1317 | # needed in Windows |
---|
1318 | set env(GSAS) [file nativename $expgui(gsasdir)] |
---|
1319 | |
---|
1320 | global tcl_platform |
---|
1321 | # Save the current exp file |
---|
1322 | savearchiveexp |
---|
1323 | # disable the file changed monitor |
---|
1324 | set expgui(expModifiedLast) 0 |
---|
1325 | set expnam [file root [file tail $expgui(expfile)]] |
---|
1326 | catch { |
---|
1327 | if {$tcl_platform(platform) == "windows"} { |
---|
1328 | exec [file join $expgui(gsasexe) exptool.exe] $expnam \ |
---|
1329 | < exptool.in >& exptool.out |
---|
1330 | } else { |
---|
1331 | exec [file join $expgui(gsasexe) exptool] $expnam \ |
---|
1332 | < exptool.in >& exptool.out |
---|
1333 | } |
---|
1334 | } errmsg |
---|
1335 | # load the revised exp file |
---|
1336 | set oldatomlist $expmap(atomlist_$phase) |
---|
1337 | loadexp $expgui(expfile) |
---|
1338 | set fp [open exptool.out r] |
---|
1339 | set out [read $fp] |
---|
1340 | close $fp |
---|
1341 | destroy $top |
---|
1342 | set err 0 |
---|
1343 | if {[llength $oldatomlist] == [llength $expmap(atomlist_$phase))]} { |
---|
1344 | set err 1 |
---|
1345 | } |
---|
1346 | if {$errmsg != ""} { |
---|
1347 | append errmsg "\n" $out |
---|
1348 | set err 1 |
---|
1349 | } else { |
---|
1350 | set errmsg $out |
---|
1351 | } |
---|
1352 | if {$expgui(showexptool) || $err} { |
---|
1353 | set msg "Please review the result from adding the atom(s)" |
---|
1354 | if {$err} {append msg "\nIt appears an error occurred!"} |
---|
1355 | ShowBigMessage $top $msg $errmsg OK "" $err |
---|
1356 | } |
---|
1357 | file delete exptool.in exptool.out |
---|
1358 | } |
---|
1359 | |
---|
1360 | #--------------------------------------------------------------------------- |
---|
1361 | # commands to modify a group of selected atoms |
---|
1362 | #--------------------------------------------------------------------------- |
---|
1363 | |
---|
1364 | # make the dialog to choose an action |
---|
1365 | proc MakeXformAtomsBox {phase} { |
---|
1366 | global expgui expmap |
---|
1367 | set numberList {} |
---|
1368 | set p $expgui(curPhase) |
---|
1369 | foreach AtomIndex $expgui(selectedatomlist) { |
---|
1370 | # get atom number & phase |
---|
1371 | set tuple [lindex $expmap(atomlistboxcontents) $AtomIndex] |
---|
1372 | lappend numberList [lindex $tuple 0] |
---|
1373 | } |
---|
1374 | if {$numberList == ""} return |
---|
1375 | if {[llength $numberList] > 1} { |
---|
1376 | set suffix s |
---|
1377 | set suffixy "ies" |
---|
1378 | } else { |
---|
1379 | set suffix "" |
---|
1380 | set suffixy "y" |
---|
1381 | } |
---|
1382 | set w .global |
---|
1383 | catch {destroy $w} |
---|
1384 | toplevel $w |
---|
1385 | wm title $w "Edit Atomic Parameter -- phase #$phase" |
---|
1386 | bind $w <Key-F1> "MakeWWWHelp expgui2.html xform" |
---|
1387 | # this needs to track by phase |
---|
1388 | grid [label $w.0 \ |
---|
1389 | -text "Modifying atom${suffix} [CompressList $numberList] Phase $phase" \ |
---|
1390 | -bg yellow -anchor center] -row 0 -column 0 -columnspan 10 \ |
---|
1391 | -sticky nsew |
---|
1392 | grid rowconfigure $w 0 -pad 5 |
---|
1393 | grid rowconfigure $w 1 -minsize 2 |
---|
1394 | |
---|
1395 | grid [TitleFrame $w.1 -bd 6 -relief groove -text "Modify coordinates"] \ |
---|
1396 | -row 2 -column 0 -columnspan 10 -sticky news |
---|
1397 | set w1 [$w.1 getframe] |
---|
1398 | set row 0 |
---|
1399 | foreach v {x y z} { |
---|
1400 | incr row |
---|
1401 | set col -1 |
---|
1402 | grid [label $w1.l$v -text "new $v = "] -column [incr col] -row $row |
---|
1403 | foreach o {x y z} { |
---|
1404 | grid [entry $w1.e${v}${o} -width 6] -column [incr col] -row $row |
---|
1405 | $w1.e${v}${o} delete 0 end |
---|
1406 | if {$v == $o} { |
---|
1407 | $w1.e${v}${o} insert end "1.0" |
---|
1408 | } else { |
---|
1409 | $w1.e${v}${o} insert end "0." |
---|
1410 | } |
---|
1411 | grid [label $w1.p${v}${o} -text " $o + "] \ |
---|
1412 | -column [incr col] -row $row |
---|
1413 | } |
---|
1414 | grid [entry $w1.e${v} -width 6] -column [incr col] -row $row |
---|
1415 | $w1.e${v} delete 0 end |
---|
1416 | $w1.e${v} insert end "0." |
---|
1417 | } |
---|
1418 | grid [button $w1.do -text "Transform Coordinates" \ |
---|
1419 | -command "XformAtomsCoord $phase [list $numberList] $w1" \ |
---|
1420 | ] -row [incr row] -column 0 -columnspan 10 |
---|
1421 | |
---|
1422 | grid rowconfigure $w 3 -minsize 5 |
---|
1423 | grid [TitleFrame $w.4 -bd 6 -relief groove -text "Modify occupanc${suffixy}"] \ |
---|
1424 | -row 4 -column 0 -columnspan 10 -sticky news |
---|
1425 | set w2 [$w.4 getframe] |
---|
1426 | grid [label $w2.1 -text "Occupancy: "] -row 1 -column 0 |
---|
1427 | grid [entry $w2.e -width 10] -column 1 -row 1 |
---|
1428 | $w2.e delete 0 end |
---|
1429 | $w2.e insert end 1.0 |
---|
1430 | grid columnconfigure $w2 2 -weight 1 |
---|
1431 | grid [button $w2.do -text "Set Occupanc${suffixy}" \ |
---|
1432 | -command "XformAtomsOcc $phase [list $numberList] $w2" \ |
---|
1433 | ] -row 2 -column 0 -columnspan 10 |
---|
1434 | |
---|
1435 | grid rowconfigure $w 5 -minsize 5 |
---|
1436 | grid [TitleFrame $w.6 -bd 6 -relief groove \ |
---|
1437 | -text "Modify Displacement Parameter$suffix"] \ |
---|
1438 | -row 6 -column 0 -columnspan 10 -sticky news |
---|
1439 | set w2 [$w.6 getframe] |
---|
1440 | grid [entry $w2.e -width 10] -column 1 -row 1 |
---|
1441 | $w2.e delete 0 end |
---|
1442 | $w2.e insert end 0.025 |
---|
1443 | grid columnconfigure $w2 2 -weight 1 |
---|
1444 | grid [button $w2.do -text "Set U" \ |
---|
1445 | -command "XformAtomsU $phase [list $numberList] $w2" \ |
---|
1446 | ] -row 2 -column 0 -columnspan 10 |
---|
1447 | grid [frame $w2.f] -row 3 -column 0 -columnspan 10 |
---|
1448 | |
---|
1449 | if {[lindex $expmap(phasetype) [expr {$p - 1}]] != 4} { |
---|
1450 | grid [label $w2.1 -text "Uiso or Uequiv: "] -row 1 -column 0 |
---|
1451 | grid [button $w2.f.iso -text "Set Isotropic" \ |
---|
1452 | -command "XformAtomsU $phase [list $numberList] iso" \ |
---|
1453 | ] -row 0 -column 0 |
---|
1454 | grid [button $w2.f.aniso -text "Set Anisotropic" \ |
---|
1455 | -command "XformAtomsU $phase [list $numberList] aniso" \ |
---|
1456 | ] -row 0 -column 1 |
---|
1457 | } else { |
---|
1458 | grid [label $w2.1 -text "Uiso: "] -row 1 -column 0 |
---|
1459 | } |
---|
1460 | |
---|
1461 | grid rowconfigure $w 5 -minsize 5 |
---|
1462 | if {[lindex $expmap(phasetype) [expr {$p - 1}]] != 4} { |
---|
1463 | grid [TitleFrame $w.8 -bd 6 -relief groove \ |
---|
1464 | -text "Erase Atom$suffix"] \ |
---|
1465 | -row 8 -column 0 -columnspan 10 -sticky news |
---|
1466 | set w2 [$w.8 getframe] |
---|
1467 | grid [button $w2.do -text "Erase Atom${suffix}" \ |
---|
1468 | -command "EraseAtoms $phase [list $numberList] $w" \ |
---|
1469 | ] -row 2 -column 0 -columnspan 10 |
---|
1470 | } |
---|
1471 | |
---|
1472 | grid rowconfigure $w 9 -minsize 5 |
---|
1473 | grid [frame $w.b] -row 10 -column 0 -columnspan 10 -sticky ew |
---|
1474 | pack [button $w.b.3 -text Close -command "destroy $w"] -side left \ |
---|
1475 | -padx 5 -pady 5 |
---|
1476 | pack [button $w.b.help -text Help -bg yellow \ |
---|
1477 | -command "MakeWWWHelp expgui2.html xform"] -side right \ |
---|
1478 | -padx 5 -pady 5 |
---|
1479 | bind $w <Return> "destroy $w" |
---|
1480 | |
---|
1481 | # force the window to stay on top |
---|
1482 | putontop $w |
---|
1483 | focus $w.b.3 |
---|
1484 | tkwait window $w |
---|
1485 | afterputontop |
---|
1486 | # if there are selected atoms, reset their display |
---|
1487 | if {[llength $expgui(selectedatomlist)] != 0} editRecord |
---|
1488 | } |
---|
1489 | |
---|
1490 | # transform the coordinates |
---|
1491 | proc XformAtomsCoord {phase numberList w1} { |
---|
1492 | global expgui expmap |
---|
1493 | if {[lindex $expmap(phasetype) [expr {$phase - 1}]] == 4} { |
---|
1494 | set cmd mmatominfo |
---|
1495 | } else { |
---|
1496 | set cmd atominfo |
---|
1497 | } |
---|
1498 | # get the matrix |
---|
1499 | foreach v {x y z} { |
---|
1500 | foreach o {x y z} { |
---|
1501 | set matrix(${v}${o}) [$w1.e${v}${o} get] |
---|
1502 | } |
---|
1503 | set matrix(${v}) [$w1.e${v} get] |
---|
1504 | } |
---|
1505 | foreach atom $numberList { |
---|
1506 | foreach v {x y z} { |
---|
1507 | set $v [$cmd $phase $atom $v] |
---|
1508 | } |
---|
1509 | foreach v {x y z} { |
---|
1510 | set new$v $matrix(${v}) |
---|
1511 | foreach o {x y z} { |
---|
1512 | set new$v [expr [set new$v] + $matrix(${v}${o})*[set $o]] |
---|
1513 | } |
---|
1514 | $cmd $phase $atom $v set [set new$v] |
---|
1515 | } |
---|
1516 | incr expgui(changed) |
---|
1517 | } |
---|
1518 | UpdateAtomLine $numberList $phase |
---|
1519 | } |
---|
1520 | |
---|
1521 | # set the occupancies to a single value |
---|
1522 | proc XformAtomsOcc {phase numberList w2} { |
---|
1523 | global expgui expmap |
---|
1524 | if {[lindex $expmap(phasetype) [expr {$phase - 1}]] == 4} { |
---|
1525 | set cmd mmatominfo |
---|
1526 | } else { |
---|
1527 | set cmd atominfo |
---|
1528 | } |
---|
1529 | # get the value |
---|
1530 | set val [$w2.e get] |
---|
1531 | foreach atom $numberList { |
---|
1532 | $cmd $phase $atom frac set $val |
---|
1533 | incr expgui(changed) |
---|
1534 | } |
---|
1535 | UpdateAtomLine $numberList $phase |
---|
1536 | } |
---|
1537 | |
---|
1538 | # transform Uiso or Uij; if anisotropic set Uequiv to Uij |
---|
1539 | proc XformAtomsU {phase numberList w2} { |
---|
1540 | global expgui |
---|
1541 | if {$w2 == "iso"} { |
---|
1542 | foreach atom $numberList { |
---|
1543 | if {[atominfo $phase $atom temptype] != "I"} { |
---|
1544 | atominfo $phase $atom temptype set I |
---|
1545 | incr expgui(changed) |
---|
1546 | } |
---|
1547 | } |
---|
1548 | } elseif {$w2 == "aniso"} { |
---|
1549 | foreach atom $numberList { |
---|
1550 | if {[atominfo $phase $atom temptype] == "I"} { |
---|
1551 | atominfo $phase $atom temptype set A |
---|
1552 | incr expgui(changed) |
---|
1553 | } |
---|
1554 | } |
---|
1555 | } else { |
---|
1556 | # get the value |
---|
1557 | set val [$w2.e get] |
---|
1558 | foreach atom $numberList { |
---|
1559 | global expmap |
---|
1560 | if {[lindex $expmap(phasetype) [expr {$phase - 1}]] == 4} { |
---|
1561 | mmatominfo $phase $atom Uiso set $val |
---|
1562 | } elseif {[atominfo $phase $atom temptype] == "I"} { |
---|
1563 | atominfo $phase $atom Uiso set $val |
---|
1564 | } else { |
---|
1565 | atominfo $phase $atom U11 set $val |
---|
1566 | atominfo $phase $atom U22 set $val |
---|
1567 | atominfo $phase $atom U33 set $val |
---|
1568 | atominfo $phase $atom U12 set 0.0 |
---|
1569 | atominfo $phase $atom U13 set 0.0 |
---|
1570 | atominfo $phase $atom U23 set 0.0 |
---|
1571 | } |
---|
1572 | incr expgui(changed) |
---|
1573 | } |
---|
1574 | } |
---|
1575 | UpdateAtomLine $numberList $phase |
---|
1576 | } |
---|
1577 | |
---|
1578 | # confirm and erase atoms |
---|
1579 | proc EraseAtoms {phase numberList w2} { |
---|
1580 | global expgui |
---|
1581 | if {[llength $numberList] <= 0} return |
---|
1582 | # make a list of atoms |
---|
1583 | foreach atom $numberList { |
---|
1584 | append atomlist "\n\t$atom [atominfo $phase $atom label]" |
---|
1585 | } |
---|
1586 | set msg "OK to remove the following [llength $numberList] atoms from phase $phase:$atomlist" |
---|
1587 | set val [MyMessageBox -parent $w2 -type okcancel -icon warning \ |
---|
1588 | -default cancel -title "Confirm Erase" -message $msg] |
---|
1589 | if {$val == "ok"} { |
---|
1590 | foreach atom $numberList { |
---|
1591 | EraseAtom $atom $phase |
---|
1592 | incr expgui(changed) |
---|
1593 | } |
---|
1594 | mapexp |
---|
1595 | DisplayAllAtoms $phase |
---|
1596 | destroy $w2 |
---|
1597 | } |
---|
1598 | } |
---|
1599 | |
---|
1600 | #----------- more Add Phase routines (import) ------------------------------- |
---|
1601 | proc ImportPhase {format np} { |
---|
1602 | global expgui |
---|
1603 | foreach item $expgui(extensions_$format) { |
---|
1604 | lappend typelist [list $format $item] |
---|
1605 | } |
---|
1606 | lappend typelist [list "All files" *] |
---|
1607 | set file [tk_getOpenFile -parent $np -filetypes $typelist] |
---|
1608 | if {![file exists $file]} return |
---|
1609 | # read in the file |
---|
1610 | set input [$expgui(proc_$format) $file] |
---|
1611 | catch { |
---|
1612 | $np.bf.b1 config -text "Continue" -command "addphase $np; AddAtomsList" |
---|
1613 | bind $np <Return> "addphase $np; AddAtomsList" |
---|
1614 | } |
---|
1615 | catch { |
---|
1616 | $np.t1 delete 0 end |
---|
1617 | $np.t1 insert end "from $file" |
---|
1618 | } |
---|
1619 | $np.t2 delete 0 end |
---|
1620 | $np.t2 insert end [lindex $input 0] |
---|
1621 | foreach i {.e1a .e1b .e1c .e2a .e2b .e2g} val [lindex $input 1] { |
---|
1622 | $np.f$i delete 0 end |
---|
1623 | $np.f$i insert end $val |
---|
1624 | } |
---|
1625 | set expgui(coordList) [lindex $input 2] |
---|
1626 | set msg [lindex $input 3] |
---|
1627 | if {$msg != ""} { |
---|
1628 | catch {destroy $np.msg} |
---|
1629 | grid [label $np.msg -text $msg -fg red -anchor center -bd 4 -relief raised] \ |
---|
1630 | -column 0 -columnspan 99 -row 20 -sticky ew |
---|
1631 | } |
---|
1632 | } |
---|
1633 | |
---|
1634 | proc ImportAtoms {format top phase} { |
---|
1635 | global expgui |
---|
1636 | foreach item $expgui(extensions_$format) { |
---|
1637 | lappend typelist [list $format $item] |
---|
1638 | } |
---|
1639 | lappend typelist [list "All files" *] |
---|
1640 | set file [tk_getOpenFile -parent $top -filetypes $typelist] |
---|
1641 | if {![file exists $file]} return |
---|
1642 | # disable during read |
---|
1643 | catch { |
---|
1644 | foreach b "$top.b1 $top.b2 $top.fr.b3" { |
---|
1645 | $b config -state disabled |
---|
1646 | } |
---|
1647 | } |
---|
1648 | # read in the file |
---|
1649 | set input [$expgui(proc_$format) $file] |
---|
1650 | # add atoms to table |
---|
1651 | foreach item [lindex $input 2] { |
---|
1652 | set row [MakeAddAtomsRow $top] |
---|
1653 | set np $top.canvas.fr |
---|
1654 | foreach val $item w {n x y z t o u} { |
---|
1655 | if {$val != ""} { |
---|
1656 | $np.e${row}$w delete 0 end |
---|
1657 | $np.e${row}$w insert end $val |
---|
1658 | } |
---|
1659 | } |
---|
1660 | } |
---|
1661 | # sort the atoms by number, so that empty entries are at the bottom |
---|
1662 | sortAddAtoms $phase $top number |
---|
1663 | # reenable |
---|
1664 | catch { |
---|
1665 | foreach b "$top.b1 $top.b2 $top.fr.b3" { |
---|
1666 | $b config -state normal |
---|
1667 | } |
---|
1668 | } |
---|
1669 | } |
---|
1670 | |
---|
1671 | proc AddAtomsList {} { |
---|
1672 | global expgui expmap |
---|
1673 | # skip if we aborted out of addphase |
---|
1674 | if {$expgui(oldphaselist) == -1} return |
---|
1675 | # find the new phase |
---|
1676 | set phase {} |
---|
1677 | foreach p $expmap(phaselist) { |
---|
1678 | if {[lsearch $expgui(oldphaselist) $p] == -1} { |
---|
1679 | set phase $p |
---|
1680 | break |
---|
1681 | } |
---|
1682 | } |
---|
1683 | if {$phase == ""} return |
---|
1684 | MakeAddAtomsBox $phase $expgui(coordList) |
---|
1685 | } |
---|
1686 | |
---|
1687 | # get the input formats by sourcing files named import_*.tcl |
---|
1688 | proc GetImportFormats {} { |
---|
1689 | global expgui tcl_platform |
---|
1690 | # only needs to be done once |
---|
1691 | if [catch {set expgui(importFormatList)}] { |
---|
1692 | set filelist [glob -nocomplain [file join $expgui(scriptdir) import_*.tcl]] |
---|
1693 | foreach file $filelist { |
---|
1694 | set description "" |
---|
1695 | source $file |
---|
1696 | if {$description != ""} { |
---|
1697 | lappend expgui(importFormatList) $description |
---|
1698 | if {$tcl_platform(platform) == "unix"} { |
---|
1699 | set extensions "[string tolower $extensions] [string toupper $extensions]" |
---|
1700 | } |
---|
1701 | set expgui(extensions_$description) $extensions |
---|
1702 | set expgui(proc_$description) $procname |
---|
1703 | } |
---|
1704 | } |
---|
1705 | } |
---|
1706 | } |
---|
1707 | |
---|
1708 | proc MakeReplacePhaseBox {} { |
---|
1709 | global expmap expgui tcl_platform |
---|
1710 | |
---|
1711 | set expgui(coordList) {} |
---|
1712 | # ignore the command if no phase is selected |
---|
1713 | foreach p {1 2 3 4 5 6 7 8 9} { |
---|
1714 | if {[lsearch $expmap(phaselist) $expgui(curPhase)] == -1} { |
---|
1715 | return |
---|
1716 | } |
---|
1717 | } |
---|
1718 | |
---|
1719 | set top .newphase |
---|
1720 | catch {destroy $top} |
---|
1721 | toplevel $top |
---|
1722 | bind $top <Key-F1> "MakeWWWHelp expgui2.html replacephase" |
---|
1723 | |
---|
1724 | grid [label $top.l1 -text "Replacing phase #$expgui(curPhase)" \ |
---|
1725 | -bg yellow -anchor center] -column 0 -columnspan 8 -row 0 -sticky ew |
---|
1726 | grid [label $top.l3a -text "Current Space Group: "] \ |
---|
1727 | -column 0 -row 2 -columnspan 2 -sticky e |
---|
1728 | grid [label $top.l3b -text [phaseinfo $expgui(curPhase) spacegroup]\ |
---|
1729 | -bd 4 -relief groove] \ |
---|
1730 | -column 2 -row 2 -sticky ew |
---|
1731 | grid [label $top.l4 -text "New Space Group: "] \ |
---|
1732 | -column 0 -row 3 -columnspan 2 -sticky e |
---|
1733 | grid [entry $top.t2 -width 12] -column 2 -row 3 -sticky w |
---|
1734 | grid [radiobutton $top.r1 -text "Reenter current atoms"\ |
---|
1735 | -variable expgui(DeleteAllAtoms) -value 0] \ |
---|
1736 | -column 1 -row 4 -columnspan 8 -sticky w |
---|
1737 | grid [radiobutton $top.r2 -text "Delete current atoms" \ |
---|
1738 | -variable expgui(DeleteAllAtoms) -value 1] \ |
---|
1739 | -column 1 -row 5 -columnspan 8 -sticky w |
---|
1740 | |
---|
1741 | grid [frame $top.f -bd 4 -relief groove] \ |
---|
1742 | -column 3 -row 2 -columnspan 3 -rowspan 4 |
---|
1743 | set col -1 |
---|
1744 | foreach i {a b c} { |
---|
1745 | grid [label $top.f.l1$i -text " $i "] -column [incr col] -row 1 |
---|
1746 | grid [entry $top.f.e1$i -width 12] -column [incr col] -row 1 |
---|
1747 | $top.f.e1$i delete 0 end |
---|
1748 | $top.f.e1$i insert 0 [phaseinfo $expgui(curPhase) $i] |
---|
1749 | } |
---|
1750 | set col -1 |
---|
1751 | foreach i {a b g} var {alpha beta gamma} { |
---|
1752 | grid [label $top.f.l2$i -text $i] -column [incr col] -row 2 |
---|
1753 | set font [$top.f.l2$i cget -font] |
---|
1754 | $top.f.l2$i config -font "Symbol [lrange $font 1 end]" |
---|
1755 | grid [entry $top.f.e2$i -width 12] -column [incr col] -row 2 |
---|
1756 | $top.f.e2$i delete 0 end |
---|
1757 | $top.f.e2$i insert 0 [phaseinfo $expgui(curPhase) $var] |
---|
1758 | } |
---|
1759 | |
---|
1760 | grid [button $top.b1 -text Continue \ |
---|
1761 | -command "replacephase1 $top $expgui(curPhase)"] \ |
---|
1762 | -column 0 -row 6 -sticky w |
---|
1763 | bind $top <Return> "replacephase1 $top $expgui(curPhase)" |
---|
1764 | grid [button $top.b2 -text Cancel \ |
---|
1765 | -command "destroy $top"] -column 1 -row 6 -sticky w |
---|
1766 | grid [button $top.help -text Help -bg yellow \ |
---|
1767 | -command "MakeWWWHelp expgui2.html replacephase"] \ |
---|
1768 | -column 2 -row 6 |
---|
1769 | |
---|
1770 | # get the input formats if not already defined |
---|
1771 | GetImportFormats |
---|
1772 | if {[llength $expgui(importFormatList)] > 0} { |
---|
1773 | grid [frame $top.fr -bd 4 -relief groove] \ |
---|
1774 | -column 2 -row 6 -columnspan 8 -sticky e |
---|
1775 | grid [button $top.fr.b3 -text "Import phase from: " \ |
---|
1776 | -command "ImportPhase \$expgui(importFormat) $top"] \ |
---|
1777 | -column 0 -row 0 -sticky e |
---|
1778 | set menu [eval tk_optionMenu $top.fr.b4 expgui(importFormat) \ |
---|
1779 | $expgui(importFormatList)] |
---|
1780 | for {set i 0} {$i <= [$menu index end]} {incr i} { |
---|
1781 | $menu entryconfig $i -command "ImportPhase \$expgui(importFormat) $np" |
---|
1782 | } |
---|
1783 | grid $top.fr.b4 -column 1 -row 0 -sticky w |
---|
1784 | grid rowconfig $top.fr 0 -pad 10 |
---|
1785 | grid columnconfig $top.fr 0 -pad 10 |
---|
1786 | grid columnconfig $top.fr 1 -pad 10 |
---|
1787 | # grid columnconfig $top 4 -weight 1 |
---|
1788 | grid columnconfig $top 2 -weight 1 |
---|
1789 | } |
---|
1790 | |
---|
1791 | wm title $top "Replace phase $expgui(curPhase)" |
---|
1792 | |
---|
1793 | # set grab, etc. |
---|
1794 | putontop $top |
---|
1795 | |
---|
1796 | tkwait window $top |
---|
1797 | |
---|
1798 | # fix grab... |
---|
1799 | afterputontop |
---|
1800 | } |
---|
1801 | |
---|
1802 | proc replacephase1 {top phase} { |
---|
1803 | # validate cell & space group & save to pass |
---|
1804 | global expgui expmap |
---|
1805 | set expgui(SetAddAtomsScroll) 0 |
---|
1806 | # validate the input |
---|
1807 | set err {} |
---|
1808 | set spg [$top.t2 get] |
---|
1809 | if {[string trim $spg] == ""} { |
---|
1810 | append err " Space group cannot be blank\n" |
---|
1811 | } |
---|
1812 | set cell {} |
---|
1813 | foreach i {a b c a b g} lbl {a b c alpha beta gamma} n {1 1 1 2 2 2} { |
---|
1814 | set $lbl [$top.f.e${n}$i get] |
---|
1815 | if {[string trim [set $lbl]] == ""} { |
---|
1816 | append err " $lbl cannot be blank\n" |
---|
1817 | } elseif {[catch {expr [set $lbl]}]} { |
---|
1818 | append err " [set $lbl] is not valid for $lbl\n" |
---|
1819 | } |
---|
1820 | lappend cell [set $lbl] |
---|
1821 | } |
---|
1822 | |
---|
1823 | if {$err != ""} { |
---|
1824 | MyMessageBox -parent $top -title "Replace Phase Error" -icon warning \ |
---|
1825 | -message "The following error(s) were found in your input:\n$err" |
---|
1826 | return |
---|
1827 | } |
---|
1828 | |
---|
1829 | # check the space group |
---|
1830 | set fp [open spg.in w] |
---|
1831 | puts $fp "N" |
---|
1832 | puts $fp "N" |
---|
1833 | puts $fp $spg |
---|
1834 | puts $fp "Q" |
---|
1835 | close $fp |
---|
1836 | global tcl_platform |
---|
1837 | catch { |
---|
1838 | if {$tcl_platform(platform) == "windows"} { |
---|
1839 | exec [file join $expgui(gsasexe) spcgroup.exe] < spg.in >& spg.out |
---|
1840 | } else { |
---|
1841 | exec [file join $expgui(gsasexe) spcgroup] < spg.in >& spg.out |
---|
1842 | } |
---|
1843 | } |
---|
1844 | set fp [open spg.out r] |
---|
1845 | set out [read $fp] |
---|
1846 | close $fp |
---|
1847 | # attempt to parse out the output (fix up if parse did not work) |
---|
1848 | if {[regexp "space group symbol.*>(.*)Enter a new space group symbol" \ |
---|
1849 | $out a b ] != 1} {set b $out} |
---|
1850 | if {[string first Error $b] != -1} { |
---|
1851 | # got an error, show it |
---|
1852 | ShowBigMessage \ |
---|
1853 | $top.error \ |
---|
1854 | "Error processing space group\nReview error message below" \ |
---|
1855 | $b OK "" 1 |
---|
1856 | return |
---|
1857 | } else { |
---|
1858 | # show the result and confirm |
---|
1859 | set opt [ShowBigMessage \ |
---|
1860 | $top.check \ |
---|
1861 | "Check the symmetry operators in the output below" \ |
---|
1862 | $b \ |
---|
1863 | {Continue Redo} ] |
---|
1864 | if {$opt > 1} return |
---|
1865 | } |
---|
1866 | file delete spg.in spg.out |
---|
1867 | # draw coordinates box |
---|
1868 | eval destroy [winfo children $top] |
---|
1869 | grid [label $top.l1 -relief groove -bd 4 -anchor center\ |
---|
1870 | -text "Atom list for phase #$phase"] \ |
---|
1871 | -column 0 -row 0 \ |
---|
1872 | -sticky we -columnspan 10 |
---|
1873 | grid [canvas $top.canvas \ |
---|
1874 | -scrollregion {0 0 5000 500} -width 0 -height 250 \ |
---|
1875 | -yscrollcommand "$top.scroll set"] \ |
---|
1876 | -column 0 -row 2 -columnspan 4 -sticky nsew |
---|
1877 | grid columnconfigure $top 3 -weight 1 |
---|
1878 | grid rowconfigure $top 2 -weight 1 |
---|
1879 | grid rowconfigure $top 1 -pad 5 |
---|
1880 | scrollbar $top.scroll \ |
---|
1881 | -command "$top.canvas yview" |
---|
1882 | frame $top.canvas.fr |
---|
1883 | $top.canvas create window 0 0 -anchor nw -window $top.canvas.fr |
---|
1884 | |
---|
1885 | set np $top.canvas.fr |
---|
1886 | set row 0 |
---|
1887 | set col 0 |
---|
1888 | grid [label $np.l_${row}0 -text " # "] -column $col -row $row |
---|
1889 | foreach i {Atom\ntype Name x y z Occ Uiso} \ |
---|
1890 | var {type name x y z occ uiso} { |
---|
1891 | grid [button $np.l_${row}$i -text $i -padx 0 -pady 0 \ |
---|
1892 | -command "sortAddAtoms $phase $top $var"] \ |
---|
1893 | -column [incr col] -row $row -sticky nsew |
---|
1894 | } |
---|
1895 | grid [label $np.l_${row}Use -text Use\nFlag] -column [incr col] -row $row |
---|
1896 | |
---|
1897 | # add the old atoms, if appropriate |
---|
1898 | if {!$expgui(DeleteAllAtoms)} { |
---|
1899 | # loop over all atoms |
---|
1900 | foreach atom $expmap(atomlist_$phase) { |
---|
1901 | set row [MakeAddAtomsRow $top] |
---|
1902 | # add all atoms in the current phase to the list |
---|
1903 | foreach w {n x y z t o} var {label x y z type frac} { |
---|
1904 | $np.e${row}$w delete 0 end |
---|
1905 | $np.e${row}$w insert end [atominfo $phase $atom $var] |
---|
1906 | } |
---|
1907 | $np.e${row}u delete 0 end |
---|
1908 | if {[atominfo $phase $atom temptype] == "I"} { |
---|
1909 | $np.e${row}u insert end [atominfo $phase $atom Uiso] |
---|
1910 | } else { |
---|
1911 | $np.e${row}u insert end [expr ( \ |
---|
1912 | [atominfo $phase $atom U11] + \ |
---|
1913 | [atominfo $phase $atom U22] + \ |
---|
1914 | [atominfo $phase $atom U33]) / 3.] |
---|
1915 | } |
---|
1916 | } |
---|
1917 | } |
---|
1918 | |
---|
1919 | # add coordinates that have been read in, if any |
---|
1920 | foreach item $expgui(coordList) { |
---|
1921 | set row [MakeAddAtomsRow $top] |
---|
1922 | foreach val $item w {n x y z t o u} { |
---|
1923 | if {$val != ""} { |
---|
1924 | $np.e${row}$w delete 0 end |
---|
1925 | $np.e${row}$w insert end $val |
---|
1926 | } |
---|
1927 | } |
---|
1928 | } |
---|
1929 | # a blank spot in the table |
---|
1930 | MakeAddAtomsRow $top |
---|
1931 | |
---|
1932 | bind $top <Configure> "SetAddAtomsScroll $top" |
---|
1933 | grid rowconfigure $top 3 -min 10 |
---|
1934 | grid [button $top.b1 -text "Continue"\ |
---|
1935 | -command "replacephase2 $phase $top [list $spg] [list $cell]"] \ |
---|
1936 | -column 0 -row 5 -sticky w |
---|
1937 | bind $top <Return> "replacephase2 $phase $top [list $spg] [list $cell]" |
---|
1938 | grid [button $top.b2 -text Cancel \ |
---|
1939 | -command "destroy $top"] -column 1 -row 5 -sticky w |
---|
1940 | if {[llength $expgui(importFormatList)] > 0} { |
---|
1941 | grid [frame $top.fr -bd 4 -relief groove] \ |
---|
1942 | -column 3 -row 5 -columnspan 2 -sticky e |
---|
1943 | grid [button $top.fr.b3 -text "Import atoms from: " \ |
---|
1944 | -command "ImportAtoms \$expgui(importFormat) $top $phase"] \ |
---|
1945 | -column 0 -row 0 -sticky e |
---|
1946 | set menu [eval tk_optionMenu $top.fr.b4 expgui(importFormat) \ |
---|
1947 | $expgui(importFormatList)] |
---|
1948 | for {set i 0} {$i <= [$menu index end]} {incr i} { |
---|
1949 | $menu entryconfig $i -command "ImportAtoms \$expgui(importFormat) $top $phase" |
---|
1950 | } |
---|
1951 | grid $top.fr.b4 -column 1 -row 0 -sticky w |
---|
1952 | grid rowconfig $top.fr 0 -pad 10 |
---|
1953 | grid columnconfig $top.fr 0 -pad 10 |
---|
1954 | grid columnconfig $top.fr 1 -pad 10 |
---|
1955 | } |
---|
1956 | |
---|
1957 | grid [button $top.b3 -text "More atom boxes" \ |
---|
1958 | -command "MakeAddAtomsRow $top"] -column 3 \ |
---|
1959 | -columnspan 2 -row 4 -sticky e |
---|
1960 | |
---|
1961 | wm title $top "Replacing phase: Enter atoms" |
---|
1962 | SetAddAtomsScroll $top |
---|
1963 | |
---|
1964 | # fix grab for old window |
---|
1965 | afterputontop |
---|
1966 | # set grab, etc. |
---|
1967 | putontop $top |
---|
1968 | } |
---|
1969 | |
---|
1970 | proc replacephase2 {phase top spg cell} { |
---|
1971 | global expgui expmap env |
---|
1972 | # validate coordinates |
---|
1973 | set np $top.canvas.fr |
---|
1974 | # validate the atoms info |
---|
1975 | set atomlist [ValidateAtomsBox $top $np] |
---|
1976 | if {$atomlist == ""} return |
---|
1977 | |
---|
1978 | pleasewait "updating phase" |
---|
1979 | # replace spacegroup and cell |
---|
1980 | phaseinfo $phase spacegroup set $spg |
---|
1981 | foreach val $cell var {a b c alpha beta gamma} { |
---|
1982 | phaseinfo $phase $var set $val |
---|
1983 | } |
---|
1984 | incr expgui(changed) |
---|
1985 | # delete all atoms |
---|
1986 | foreach i $expmap(atomlist_$phase) { |
---|
1987 | EraseAtom $i $phase |
---|
1988 | incr expgui(changed) |
---|
1989 | } |
---|
1990 | # write new atoms from table as input to exptool |
---|
1991 | set fp [open exptool.in w] |
---|
1992 | puts $fp "A" |
---|
1993 | puts $fp $phase |
---|
1994 | # number of atoms |
---|
1995 | puts $fp [llength $atomlist] |
---|
1996 | foreach atomline $atomlist { |
---|
1997 | puts $fp $atomline |
---|
1998 | incr expgui(changed) |
---|
1999 | } |
---|
2000 | close $fp |
---|
2001 | # needed in UNIX |
---|
2002 | set env(ATOMDATA) [file join $expgui(gsasdir) data atmdata.dat] |
---|
2003 | set env(gsas) [file nativename $expgui(gsasdir)] |
---|
2004 | # needed in Windows |
---|
2005 | set env(GSAS) [file nativename $expgui(gsasdir)] |
---|
2006 | |
---|
2007 | global tcl_platform |
---|
2008 | # Save the current exp file |
---|
2009 | savearchiveexp |
---|
2010 | # disable the file changed monitor |
---|
2011 | set expgui(expModifiedLast) 0 |
---|
2012 | set expnam [file root [file tail $expgui(expfile)]] |
---|
2013 | catch { |
---|
2014 | if {$tcl_platform(platform) == "windows"} { |
---|
2015 | exec [file join $expgui(gsasexe) exptool.exe] $expnam \ |
---|
2016 | < exptool.in >& exptool.out |
---|
2017 | } else { |
---|
2018 | exec [file join $expgui(gsasexe) exptool] $expnam \ |
---|
2019 | < exptool.in >& exptool.out |
---|
2020 | } |
---|
2021 | } errmsg |
---|
2022 | # load the revised exp file |
---|
2023 | loadexp $expgui(expfile) |
---|
2024 | set fp [open exptool.out r] |
---|
2025 | set out [read $fp] |
---|
2026 | close $fp |
---|
2027 | set err 0 |
---|
2028 | if {[llength $atomlist] != [llength $expmap(atomlist_$phase))]} { |
---|
2029 | set err 1 |
---|
2030 | } |
---|
2031 | if {$errmsg != ""} { |
---|
2032 | append errmsg "\n" $out |
---|
2033 | set err 1 |
---|
2034 | } else { |
---|
2035 | set errmsg $out |
---|
2036 | } |
---|
2037 | donewait |
---|
2038 | if {$expgui(showexptool) || $err} { |
---|
2039 | set msg "Please review the result from adding the atom(s)" |
---|
2040 | if {$err} {append msg "\nIt appears an error occurred!"} |
---|
2041 | ShowBigMessage $top $msg $errmsg OK "" $err |
---|
2042 | } |
---|
2043 | file delete exptool.in exptool.out |
---|
2044 | # set the powpref warning (2 = required) |
---|
2045 | set expgui(needpowpref) 2 |
---|
2046 | set msg "A phase was replaced" |
---|
2047 | if {[string first $msg $expgui(needpowpref_why)] == -1} { |
---|
2048 | append expgui(needpowpref_why) "\t$msg\n" |
---|
2049 | } |
---|
2050 | destroy $top |
---|
2051 | } |
---|
2052 | |
---|
2053 | proc sortAddAtoms {phase top sortvar} { |
---|
2054 | global expgui |
---|
2055 | set np $top.canvas.fr |
---|
2056 | set validlist {} |
---|
2057 | set invalidlist {} |
---|
2058 | set row 0 |
---|
2059 | while {![catch {grid info $np.e[incr row]t}]} { |
---|
2060 | set valid 1 |
---|
2061 | set line $row |
---|
2062 | if !{$expgui(UseAtom$row)} {set valid 0} |
---|
2063 | lappend line $expgui(UseAtom$row) |
---|
2064 | if {[set type [string trim [$np.e${row}t get]]] == ""} {set valid 0} |
---|
2065 | lappend line [string trim [$np.e${row}t get]] |
---|
2066 | lappend line [string trim [$np.e${row}n get]] |
---|
2067 | foreach i {x y z o u} { |
---|
2068 | set tmp [string trim [$np.e${row}$i get]] |
---|
2069 | lappend line $tmp |
---|
2070 | if {$tmp == "" || [catch {expr $tmp}]} {set valid 0} |
---|
2071 | } |
---|
2072 | if {$valid} { |
---|
2073 | lappend validlist $line |
---|
2074 | } else { |
---|
2075 | lappend invalidlist $line |
---|
2076 | } |
---|
2077 | } |
---|
2078 | switch $sortvar { |
---|
2079 | type {set sortlist [lsort -index 2 -dictionary $validlist]} |
---|
2080 | name {set sortlist [lsort -index 3 -dictionary $validlist]} |
---|
2081 | x {set sortlist [lsort -index 4 -real $validlist]} |
---|
2082 | y {set sortlist [lsort -index 5 -real $validlist]} |
---|
2083 | z {set sortlist [lsort -index 6 -real $validlist]} |
---|
2084 | occ {set sortlist [lsort -index 7 -real $validlist]} |
---|
2085 | uiso {set sortlist [lsort -index 8 -real $validlist]} |
---|
2086 | default {set sortlist $validlist} |
---|
2087 | } |
---|
2088 | |
---|
2089 | if {[llength $invalidlist] > 0} {append sortlist " $invalidlist"} |
---|
2090 | set row 0 |
---|
2091 | foreach line $sortlist { |
---|
2092 | incr row |
---|
2093 | set expgui(UseAtom$row) [lindex $line 1] |
---|
2094 | foreach item [lrange $line 2 end] \ |
---|
2095 | var {t n x y z o u} { |
---|
2096 | $np.e${row}$var delete 0 end |
---|
2097 | $np.e${row}$var insert end $item |
---|
2098 | } |
---|
2099 | } |
---|
2100 | } |
---|
2101 | |
---|
2102 | proc EditInstFile {"filename {}"} { |
---|
2103 | global expgui |
---|
2104 | # on the first call, load the commands |
---|
2105 | if {[catch { |
---|
2106 | if {[info procs instMakeWindow] == ""} { |
---|
2107 | source [file join $expgui(scriptdir) instedit.tcl] |
---|
2108 | } |
---|
2109 | } errmsg]} { |
---|
2110 | MyMessageBox -parent . -title "Load error" \ |
---|
2111 | -message "Unexpected error while sourcing file instedit.tcl: $errmsg" \ |
---|
2112 | -icon error |
---|
2113 | } |
---|
2114 | instMakeWindow $filename |
---|
2115 | } |
---|
2116 | |
---|
2117 | # default |
---|
2118 | set newhist(insttype) {} |
---|
2119 | set newhist(dummy) 0 |
---|
2120 | set newhist(instfiletext) {} |
---|